Wall clock time and date at job start Mon Mar 30 2020 06:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20828 * 119.99888 * 2 1 4 4 C 1.47563 * 120.00422 * 179.97438 * 2 1 3 5 5 C 1.40250 * 120.90513 * 359.97438 * 4 2 1 6 6 C 1.37916 * 119.14399 * 180.02562 * 5 4 2 7 7 N 1.31916 * 121.03387 * 359.72598 * 6 5 4 8 8 C 1.32318 * 122.00388 * 0.56998 * 7 6 5 9 9 N 1.39030 * 119.62824 * 179.70762 * 8 7 6 10 10 C 1.46502 * 119.99866 * 170.46190 * 9 8 7 11 11 C 1.50702 * 109.47036 * 89.99388 * 10 9 8 12 12 H 1.07996 * 120.00287 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99653 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00149 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99761 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47449 * 90.00079 * 15 13 11 17 17 H 1.48503 * 109.47212 * 210.00131 * 15 13 11 18 18 H 1.48497 * 109.47268 * 329.99952 * 15 13 11 19 19 C 1.46496 * 120.00421 * 350.45510 * 9 8 7 20 20 C 1.53001 * 117.50229 * 193.72715 * 19 9 8 21 21 C 1.53005 * 117.49641 * 125.06816 * 19 9 8 22 22 C 1.39102 * 120.73474 * 359.42997 * 8 7 6 23 23 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47248 * 299.99930 * 1 2 3 25 25 H 1.08994 * 109.47107 * 60.00466 * 1 2 3 26 26 H 1.07996 * 120.42919 * 0.02562 * 5 4 2 27 27 H 1.08009 * 119.48400 * 179.97438 * 6 5 4 28 28 H 1.08993 * 109.47609 * 209.99829 * 10 9 8 29 29 H 1.09003 * 109.46849 * 330.00034 * 10 9 8 30 30 H 0.97005 * 120.00161 * 179.97438 * 14 13 11 31 31 H 1.08997 * 115.55011 * 339.40625 * 19 9 8 32 32 H 1.08999 * 117.49642 * 0.02562 * 20 19 9 33 33 H 1.09001 * 117.49685 * 145.02630 * 20 19 9 34 34 H 1.09004 * 117.49914 * 214.98187 * 21 19 9 35 35 H 1.09001 * 117.49728 * 0.02562 * 21 19 9 36 36 H 1.08002 * 120.55142 * 180.30243 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 6 2.2449 -1.2779 0.0006 5 6 1.5630 -2.5035 0.0017 6 6 2.2890 -3.6760 0.0027 7 7 3.6081 -3.6592 -0.0027 8 6 4.2950 -2.5283 0.0018 9 7 5.6847 -2.5682 0.0019 10 6 6.4528 -1.3378 -0.2034 11 6 6.7226 -0.6859 1.1283 12 1 6.3587 -1.1427 2.0367 13 6 7.4350 0.4932 1.1869 14 7 7.8786 1.0491 0.0807 15 14 7.7700 1.3008 2.8376 16 1 9.0507 0.7891 3.3883 17 1 7.8606 2.7723 2.6594 18 1 6.6651 0.9832 3.7774 19 6 6.3810 -3.8406 0.2074 20 6 7.8782 -3.7847 0.5176 21 6 7.3977 -4.2688 -0.8528 22 6 3.6421 -1.3000 0.0007 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 0.4833 -2.5287 0.0017 27 1 1.7695 -4.6230 0.0040 28 1 7.3988 -1.5767 -0.6893 29 1 5.8831 -0.6547 -0.8335 30 1 8.3794 1.8788 0.1219 31 1 5.7961 -4.6241 0.6892 32 1 8.3450 -2.8011 0.5692 33 1 8.2783 -4.5316 1.2033 34 1 7.4820 -5.3341 -1.0681 35 1 7.5488 -3.6036 -1.7029 36 1 4.2058 -0.3787 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094997224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:26 Heat of formation + Delta-G solvation = 19.740737 kcal Electronic energy + Delta-G solvation = -19204.929929 eV Core-core repulsion = 16268.735369 eV Total energy + Delta-G solvation = -2936.194559 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48147 -40.12132 -38.80120 -35.61400 -34.56609 -33.68659 -31.17058 -30.52208 -28.77683 -25.61976 -25.14830 -23.42978 -23.17097 -22.01717 -20.26296 -18.77725 -18.51137 -17.78043 -16.97883 -16.59464 -16.22231 -16.15087 -15.94979 -15.46747 -15.28440 -14.90039 -14.78347 -14.38958 -13.67397 -13.32986 -13.15334 -13.05612 -12.94635 -12.68333 -12.49177 -12.43539 -12.22915 -12.11627 -11.50707 -11.27044 -11.07058 -10.81076 -10.69779 -10.45557 -10.27120 -8.49560 -8.06881 -6.41947 -0.32073 0.47888 1.31484 1.33750 1.43656 1.53518 2.10031 2.35056 2.93203 3.01829 3.03839 3.20753 3.65629 3.97144 3.99913 4.09461 4.20535 4.22022 4.25031 4.33560 4.68720 4.70732 4.77202 4.80785 4.91417 4.96996 5.01972 5.05793 5.18067 5.21502 5.34718 5.36317 5.58453 5.76832 5.97434 6.12311 6.51597 6.66899 6.72436 7.21107 7.33690 8.78392 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.008338 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.802219 B = 3357.203580 C = 4913.371730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.390 3.610 3 O -0.503 6.503 4 C -0.106 4.106 5 C -0.185 4.185 6 C 0.135 3.865 7 N -0.543 5.543 8 C 0.387 3.613 9 N -0.576 5.576 10 C 0.275 3.725 11 C -0.534 4.534 12 H 0.049 0.951 13 C 0.015 3.985 14 N -0.924 5.924 15 Si 0.958 3.042 16 H -0.265 1.265 17 H -0.281 1.281 18 H -0.275 1.275 19 C 0.090 3.910 20 C -0.187 4.187 21 C -0.185 4.185 22 C -0.207 4.207 23 H 0.120 0.880 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.191 0.809 27 H 0.204 0.796 28 H 0.023 0.977 29 H 0.001 0.999 30 H 0.267 0.733 31 H 0.135 0.865 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 -10.511 -0.065 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.270 3.730 3 O -0.380 6.380 4 C -0.115 4.115 5 C -0.208 4.208 6 C -0.023 4.023 7 N -0.262 5.262 8 C 0.154 3.846 9 N -0.284 5.284 10 C 0.154 3.846 11 C -0.573 4.573 12 H 0.067 0.933 13 C -0.185 4.185 14 N -0.563 5.563 15 Si 0.783 3.217 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.199 1.199 19 C -0.015 4.015 20 C -0.224 4.224 21 C -0.224 4.224 22 C -0.233 4.233 23 H 0.138 0.862 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.208 0.792 27 H 0.221 0.779 28 H 0.041 0.959 29 H 0.019 0.981 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.096 0.904 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.967 -10.547 -0.148 16.715 hybrid contribution 0.583 1.877 0.572 2.047 sum -12.384 -8.670 0.424 15.123 Atomic orbital electron populations 1.22253 0.88224 1.07560 1.06045 1.23460 0.94285 0.86154 0.69105 1.90462 1.73781 1.36009 1.37717 1.21083 0.92611 0.97479 1.00297 1.22473 1.03022 0.90101 1.05155 1.23224 0.87407 1.00122 0.91589 1.67127 1.11214 1.27977 1.19875 1.18366 0.85396 0.89165 0.91716 1.46384 1.01009 1.07957 1.73095 1.18770 0.90072 0.80242 0.95541 1.21602 1.34727 1.07658 0.93310 0.93314 1.25740 0.95244 0.97286 1.00204 1.70024 1.37659 1.19943 1.28715 0.85547 0.78829 0.77664 0.79655 1.18965 1.20592 1.19945 1.21535 0.89395 0.87248 1.03296 1.23348 0.96559 1.02984 0.99552 1.23384 1.04218 1.02309 0.92489 1.21766 0.95595 0.97824 1.08123 0.86165 0.87450 0.87316 0.79249 0.77938 0.95913 0.98101 0.92355 0.84748 0.90413 0.86104 0.85531 0.91033 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 10.21 71.23 0.73 -2.24 16 2 C 0.39 12.19 7.24 28.15 0.20 12.39 16 3 O -0.50 -21.41 17.16 -1.65 -0.03 -21.44 16 4 C -0.11 -3.56 5.90 -19.96 -0.12 -3.68 16 5 C -0.19 -4.23 9.51 22.68 0.22 -4.01 16 6 C 0.13 3.34 11.16 84.60 0.94 4.28 16 7 N -0.54 -19.13 9.24 -193.44 -1.79 -20.91 16 8 C 0.39 16.79 7.34 133.07 0.98 17.77 16 9 N -0.58 -26.66 2.92 -684.30 -2.00 -28.66 16 10 C 0.27 14.93 4.03 85.63 0.35 15.28 16 11 C -0.53 -30.83 8.64 25.60 0.22 -30.61 16 12 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 13 C 0.01 0.87 5.46 84.66 0.46 1.33 16 14 N -0.92 -55.95 13.29 21.45 0.28 -55.67 16 15 Si 0.96 45.89 29.54 68.60 2.03 47.92 16 16 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 19 C 0.09 3.48 6.26 44.99 0.28 3.76 16 20 C -0.19 -6.81 9.73 30.62 0.30 -6.52 16 21 C -0.19 -6.20 10.02 30.62 0.31 -5.90 16 22 C -0.21 -9.27 8.69 22.84 0.20 -9.07 16 23 H 0.12 1.04 5.70 -2.39 -0.01 1.03 16 24 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 26 H 0.19 2.10 6.06 -2.91 -0.02 2.08 16 27 H 0.20 2.89 8.06 -2.91 -0.02 2.86 16 28 H 0.02 1.30 6.25 -2.39 -0.01 1.28 16 29 H 0.00 0.06 6.60 -2.39 -0.02 0.05 16 30 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 31 H 0.14 4.73 7.63 -2.39 -0.02 4.71 16 32 H 0.08 3.48 6.29 -2.39 -0.02 3.46 16 33 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.13 3.28 8.14 -2.38 -0.02 3.26 16 35 H 0.07 2.67 7.82 -2.39 -0.02 2.66 16 36 H 0.10 5.61 5.91 -2.91 -0.02 5.59 16 Total: -1.00 -75.91 306.66 4.66 -71.26 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.10 Total: 14.73 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 5.06 Total: -7.23 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -3.50 Total: -105.24 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.03 Total: -21.44 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.91 4.66 -71.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094997224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.000 kcal (2) G-P(sol) polarization free energy of solvation -75.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds