Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31514 * 120.00481 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99745 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47209 * 90.00365 * 8 6 4 10 10 H 1.48506 * 109.47294 * 210.00213 * 8 6 4 11 11 H 1.48501 * 109.47275 * 330.00116 * 8 6 4 12 12 O 1.45196 * 109.47118 * 239.99498 * 2 1 3 13 13 C 1.34711 * 116.99935 * 90.00354 * 12 2 1 14 14 O 1.21469 * 119.99694 * 359.97438 * 13 12 2 15 15 C 1.47726 * 120.00151 * 179.97438 * 13 12 2 16 16 C 1.39652 * 120.18934 * 359.97438 * 15 13 12 17 17 C 1.37790 * 119.77840 * 179.97438 * 16 15 13 18 18 C 1.38677 * 120.41836 * 0.02562 * 17 16 15 19 19 C 1.38383 * 120.08812 * 359.97438 * 18 17 16 20 20 C 1.38224 * 120.00157 * 359.73604 * 19 18 17 21 21 C 1.51395 * 109.74377 * 179.97438 * 19 18 17 22 22 C 1.54334 * 105.17306 * 342.77835 * 21 19 18 23 23 C 1.51426 * 130.21166 * 179.97438 * 18 17 16 24 24 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 25 25 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.07998 * 120.11064 * 0.02562 * 16 15 13 29 29 H 1.07998 * 119.78870 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.95398 * 180.25772 * 20 19 18 31 31 H 1.08997 * 110.30308 * 223.85162 * 21 19 18 32 32 H 1.08997 * 110.38538 * 101.74124 * 21 19 18 33 33 H 1.09004 * 110.81604 * 268.18301 * 22 21 19 34 34 H 1.08995 * 110.99487 * 144.72330 * 22 21 19 35 35 H 1.09002 * 110.30074 * 316.15977 * 23 18 17 36 36 H 1.09004 * 110.29731 * 78.30133 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 2.1425 -0.8556 3.5567 8 14 0.6368 1.2877 2.6540 9 1 -0.7926 0.8881 2.7031 10 1 0.9937 2.0040 3.9050 11 1 0.8610 2.1824 1.4902 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0665 -2.2850 14 8 1.9970 1.2606 -2.2543 15 6 2.7102 -0.5619 -3.5280 16 6 2.9660 -1.9342 -3.5674 17 6 3.4244 -2.5117 -4.7315 18 6 3.6339 -1.7387 -5.8636 19 6 3.3824 -0.3783 -5.8311 20 6 2.9165 0.2109 -4.6707 21 6 3.6888 0.2309 -7.1827 22 6 4.5644 -0.8132 -7.9073 23 6 4.1257 -2.1341 -7.2401 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.9118 -0.5216 4.4376 28 1 2.8042 -2.5410 -2.6888 29 1 3.6227 -3.5729 -4.7621 30 1 2.7165 1.2720 -4.6474 31 1 4.2370 1.1652 -7.0610 32 1 2.7676 0.4034 -7.7391 33 1 5.6226 -0.6217 -7.7295 34 1 4.3495 -0.8292 -8.9757 35 1 4.9726 -2.8153 -7.1579 36 1 3.3207 -2.5975 -7.8106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113686372.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = -67.572068 kcal Electronic energy + Delta-G solvation = -18714.985022 eV Core-core repulsion = 15742.711544 eV Total energy + Delta-G solvation = -2972.273478 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.39019 -39.29683 -36.10705 -35.46039 -33.18216 -31.54666 -30.73011 -29.29550 -27.54372 -25.29113 -23.96776 -22.12536 -21.17140 -20.98198 -19.53673 -17.49191 -16.62450 -16.29572 -15.77964 -15.52511 -15.32070 -14.92280 -14.63669 -13.82474 -13.34756 -13.12804 -13.08952 -12.76159 -12.62121 -12.30139 -12.09506 -11.87826 -11.62411 -11.49920 -11.42243 -11.05320 -10.89661 -10.85482 -10.23416 -10.03565 -9.77625 -9.61846 -9.12674 -8.88700 -8.69520 -8.59757 -6.22791 -4.25248 0.84189 1.35464 2.93235 3.18925 3.31180 3.33536 3.41374 3.88737 4.25431 4.26819 4.33941 4.74412 4.89764 4.95813 5.07029 5.08605 5.24011 5.37291 5.46435 5.46641 5.56726 5.63091 5.72289 5.89343 5.92042 6.03664 6.15299 6.25531 6.32379 6.38837 6.48238 6.49808 6.61741 6.86381 7.02147 7.34410 7.50063 8.21864 8.58241 8.83849 9.34233 10.89294 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.045841 B = 0.004242 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.661019 B = 6598.471503 C = 6956.476128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.191 3.809 3 H 0.047 0.953 4 C -0.525 4.525 5 H 0.088 0.912 6 C 0.080 3.920 7 N -0.888 5.888 8 Si 0.879 3.121 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.262 1.262 12 O -0.335 6.335 13 C 0.498 3.502 14 O -0.520 6.520 15 C -0.114 4.114 16 C -0.059 4.059 17 C -0.122 4.122 18 C -0.074 4.074 19 C -0.116 4.116 20 C -0.047 4.047 21 C -0.079 4.079 22 C -0.121 4.121 23 C -0.085 4.085 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.269 0.731 28 H 0.145 0.855 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 -1.613 -21.706 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.137 3.863 3 H 0.064 0.936 4 C -0.563 4.563 5 H 0.106 0.894 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.708 3.292 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.187 1.187 12 O -0.251 6.251 13 C 0.343 3.657 14 O -0.411 6.411 15 C -0.115 4.115 16 C -0.077 4.077 17 C -0.140 4.140 18 C -0.074 4.074 19 C -0.116 4.116 20 C -0.065 4.065 21 C -0.116 4.116 22 C -0.158 4.158 23 C -0.122 4.122 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.163 0.837 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.583 -1.279 -21.424 21.617 hybrid contribution -0.721 0.871 0.480 1.228 sum 1.863 -0.408 -20.944 21.030 Atomic orbital electron populations 1.22522 0.98404 1.01915 0.99862 1.20957 0.90528 0.94510 0.80292 0.93553 1.20775 1.33488 1.14774 0.87214 0.89448 1.24720 0.95630 0.96743 0.95222 1.69834 1.44765 1.39931 0.97993 0.86975 0.80736 0.83698 0.77826 1.19952 1.21635 1.18679 1.86555 1.75758 1.42301 1.20468 1.21074 0.74786 0.85205 0.84648 1.90754 1.49215 1.16303 1.84837 1.19189 1.05670 0.94414 0.92253 1.21502 0.94122 0.93766 0.98333 1.20612 1.01548 1.00026 0.91801 1.20861 0.97169 0.94161 0.95174 1.20441 1.01287 0.94746 0.95139 1.20677 0.95367 1.00337 0.90154 1.21018 1.00129 0.98791 0.91706 1.22297 0.99981 0.94036 0.99492 1.21115 1.00961 0.98220 0.91856 0.94392 0.91724 0.92485 0.92052 0.83715 0.85471 0.84860 0.90559 0.90177 0.90853 0.90496 0.90436 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 9.04 37.16 0.34 -3.61 16 2 C 0.19 4.91 2.15 -27.88 -0.06 4.85 16 3 H 0.05 1.26 6.20 -51.93 -0.32 0.94 16 4 C -0.52 -15.18 9.47 -34.44 -0.33 -15.51 16 5 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 6 C 0.08 2.31 5.45 -17.82 -0.10 2.22 16 7 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 8 Si 0.88 21.83 24.39 -169.99 -4.15 17.68 16 9 H -0.27 -6.49 6.87 56.52 0.39 -6.10 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 12 O -0.34 -7.87 9.12 -40.52 -0.37 -8.24 16 13 C 0.50 10.60 7.87 34.61 0.27 10.87 16 14 O -0.52 -12.10 15.60 -19.24 -0.30 -12.40 16 15 C -0.11 -1.95 5.87 -105.03 -0.62 -2.56 16 16 C -0.06 -0.88 9.62 -39.22 -0.38 -1.25 16 17 C -0.12 -1.47 10.02 -39.58 -0.40 -1.87 16 18 C -0.07 -0.83 6.14 -104.05 -0.64 -1.47 16 19 C -0.12 -1.41 6.12 -104.23 -0.64 -2.05 16 20 C -0.05 -0.70 9.59 -39.12 -0.38 -1.07 16 21 C -0.08 -0.70 6.77 -26.84 -0.18 -0.88 16 22 C -0.12 -0.85 7.08 -25.33 -0.18 -1.03 16 23 C -0.08 -0.67 6.77 -26.82 -0.18 -0.85 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.06 1.34 3.31 -51.93 -0.17 1.16 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.15 2.14 7.62 -52.49 -0.40 1.74 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.13 1.95 7.64 -52.49 -0.40 1.55 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -32.09 299.87 -7.69 -39.78 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.70 Total: -1.06 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -3.46 Total: -14.21 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.77 Total: -26.06 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.67 Total: -20.64 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.15 Total: 17.68 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.09 -7.69 -39.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686372.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.796 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds