Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31514 * 120.00481 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99745 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47209 * 90.00365 * 8 6 4 10 10 H 1.48506 * 109.47294 * 210.00213 * 8 6 4 11 11 H 1.48501 * 109.47275 * 330.00116 * 8 6 4 12 12 O 1.45196 * 109.47118 * 239.99498 * 2 1 3 13 13 C 1.34711 * 116.99935 * 90.00354 * 12 2 1 14 14 O 1.21469 * 119.99694 * 359.97438 * 13 12 2 15 15 C 1.47726 * 120.00151 * 179.97438 * 13 12 2 16 16 C 1.39652 * 120.18934 * 359.97438 * 15 13 12 17 17 C 1.37790 * 119.77840 * 179.97438 * 16 15 13 18 18 C 1.38677 * 120.41836 * 0.02562 * 17 16 15 19 19 C 1.38383 * 120.08812 * 359.97438 * 18 17 16 20 20 C 1.38224 * 120.00157 * 359.73604 * 19 18 17 21 21 C 1.51395 * 109.74377 * 179.97438 * 19 18 17 22 22 C 1.54334 * 105.17306 * 342.77835 * 21 19 18 23 23 C 1.51426 * 130.21166 * 179.97438 * 18 17 16 24 24 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 25 25 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.07998 * 120.11064 * 0.02562 * 16 15 13 29 29 H 1.07998 * 119.78870 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.95398 * 180.25772 * 20 19 18 31 31 H 1.08997 * 110.30308 * 223.85162 * 21 19 18 32 32 H 1.08997 * 110.38538 * 101.74124 * 21 19 18 33 33 H 1.09004 * 110.81604 * 268.18301 * 22 21 19 34 34 H 1.08995 * 110.99487 * 144.72330 * 22 21 19 35 35 H 1.09002 * 110.30074 * 316.15977 * 23 18 17 36 36 H 1.09004 * 110.29731 * 78.30133 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 2.1425 -0.8556 3.5567 8 14 0.6368 1.2877 2.6540 9 1 -0.7926 0.8881 2.7031 10 1 0.9937 2.0040 3.9050 11 1 0.8610 2.1824 1.4902 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0665 -2.2850 14 8 1.9970 1.2606 -2.2543 15 6 2.7102 -0.5619 -3.5280 16 6 2.9660 -1.9342 -3.5674 17 6 3.4244 -2.5117 -4.7315 18 6 3.6339 -1.7387 -5.8636 19 6 3.3824 -0.3783 -5.8311 20 6 2.9165 0.2109 -4.6707 21 6 3.6888 0.2309 -7.1827 22 6 4.5644 -0.8132 -7.9073 23 6 4.1257 -2.1341 -7.2401 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.9118 -0.5216 4.4376 28 1 2.8042 -2.5410 -2.6888 29 1 3.6227 -3.5729 -4.7621 30 1 2.7165 1.2720 -4.6474 31 1 4.2370 1.1652 -7.0610 32 1 2.7676 0.4034 -7.7391 33 1 5.6226 -0.6217 -7.7295 34 1 4.3495 -0.8292 -8.9757 35 1 4.9726 -2.8153 -7.1579 36 1 3.3207 -2.5975 -7.8106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113686372.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = -85.903448 kcal Electronic energy + Delta-G solvation = -18715.779930 eV Core-core repulsion = 15742.711544 eV Total energy + Delta-G solvation = -2973.068386 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.70659 -40.67201 -37.80829 -36.53761 -35.30594 -32.78452 -32.51050 -30.33805 -28.36381 -27.39841 -25.34339 -23.26066 -22.80384 -21.70789 -21.12964 -19.24177 -18.50104 -17.95760 -17.07365 -16.76327 -16.56453 -16.30271 -15.94516 -15.24425 -14.92881 -14.53040 -14.35235 -14.24993 -13.88664 -13.69630 -13.55010 -13.46228 -12.90988 -12.84477 -12.51451 -12.27186 -12.01229 -11.90008 -11.81769 -11.73701 -11.67505 -11.46991 -11.27310 -10.86684 -9.94572 -9.60457 -8.47371 -6.56754 -0.36385 0.31233 1.21529 1.29403 1.39093 1.48620 1.78800 2.17577 2.69543 2.85082 3.41712 3.55449 3.70577 3.96123 4.13850 4.18808 4.20033 4.26243 4.33817 4.36871 4.46036 4.63164 4.68007 4.73855 4.88806 4.97713 5.00808 5.10604 5.13616 5.18646 5.28271 5.29865 5.32219 5.40708 5.50658 5.56304 5.85289 6.08780 6.46539 6.77820 7.07848 8.68585 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.045841 B = 0.004242 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.661019 B = 6598.471503 C = 6956.476128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.192 3.808 3 H 0.030 0.970 4 C -0.541 4.541 5 H 0.048 0.952 6 C 0.033 3.967 7 N -0.928 5.928 8 Si 0.940 3.060 9 H -0.248 1.248 10 H -0.280 1.280 11 H -0.260 1.260 12 O -0.346 6.346 13 C 0.495 3.505 14 O -0.548 6.548 15 C -0.146 4.146 16 C -0.069 4.069 17 C -0.118 4.118 18 C -0.064 4.064 19 C -0.120 4.120 20 C -0.057 4.057 21 C -0.082 4.082 22 C -0.115 4.115 23 C -0.083 4.083 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.276 0.724 28 H 0.135 0.865 29 H 0.158 0.842 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -1.653 -24.720 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.138 3.862 3 H 0.048 0.952 4 C -0.579 4.579 5 H 0.066 0.934 6 C -0.168 4.168 7 N -0.566 5.566 8 Si 0.764 3.236 9 H -0.173 1.173 10 H -0.207 1.207 11 H -0.185 1.185 12 O -0.262 6.262 13 C 0.342 3.658 14 O -0.441 6.441 15 C -0.147 4.147 16 C -0.088 4.088 17 C -0.136 4.136 18 C -0.064 4.064 19 C -0.120 4.120 20 C -0.075 4.075 21 C -0.118 4.118 22 C -0.152 4.152 23 C -0.120 4.120 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.176 0.824 30 H 0.144 0.856 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.300 -1.336 -24.457 24.601 hybrid contribution -0.502 0.785 1.286 1.588 sum 1.799 -0.551 -23.171 23.247 Atomic orbital electron populations 1.22410 0.96074 1.02774 1.00772 1.20696 0.92251 0.93069 0.80207 0.95230 1.20916 1.33617 1.14033 0.89315 0.93383 1.25542 0.96803 0.99874 0.94535 1.69947 1.46067 1.41809 0.98780 0.85990 0.80013 0.79534 0.78026 1.17318 1.20660 1.18472 1.86546 1.76296 1.42617 1.20722 1.21861 0.73905 0.85022 0.84992 1.90713 1.50773 1.17369 1.85245 1.19066 1.08960 0.95622 0.91023 1.21514 0.94993 0.92812 0.99450 1.20903 1.00221 1.01597 0.90858 1.21436 0.94747 0.93657 0.96541 1.20889 0.99832 0.95654 0.95586 1.20717 0.96124 1.00011 0.90632 1.21171 1.01319 0.99537 0.89809 1.22347 0.99741 0.92438 1.00668 1.21272 1.02125 0.99195 0.89401 0.92608 0.90949 0.92291 0.91408 0.84712 0.82447 0.85554 0.90079 0.88834 0.90483 0.87915 0.88676 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.52 9.04 71.98 0.65 -6.87 16 2 C 0.19 10.18 2.15 29.85 0.06 10.24 16 3 H 0.03 1.67 6.20 -2.39 -0.01 1.65 16 4 C -0.54 -32.62 9.47 25.60 0.24 -32.37 16 5 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 6 C 0.03 1.92 5.45 84.65 0.46 2.38 16 7 N -0.93 -57.37 13.96 21.45 0.30 -57.07 16 8 Si 0.94 44.92 24.39 68.60 1.67 46.59 16 9 H -0.25 -10.87 6.87 99.48 0.68 -10.19 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.26 -12.31 6.53 99.48 0.65 -11.66 16 12 O -0.35 -17.02 9.12 -56.21 -0.51 -17.53 16 13 C 0.49 22.01 7.87 70.33 0.55 22.57 16 14 O -0.55 -26.51 15.60 19.94 0.31 -26.19 16 15 C -0.15 -5.13 5.87 -20.13 -0.12 -5.25 16 16 C -0.07 -2.09 9.62 22.51 0.22 -1.87 16 17 C -0.12 -2.62 10.02 22.27 0.22 -2.40 16 18 C -0.06 -1.26 6.14 -19.49 -0.12 -1.37 16 19 C -0.12 -2.68 6.12 -19.61 -0.12 -2.80 16 20 C -0.06 -1.69 9.59 22.57 0.22 -1.47 16 21 C -0.08 -1.17 6.77 30.52 0.21 -0.96 16 22 C -0.11 -1.09 7.08 31.50 0.22 -0.87 16 23 C -0.08 -0.93 6.77 30.54 0.21 -0.73 16 24 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 26 H 0.06 2.67 3.31 -2.38 -0.01 2.66 16 27 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 28 H 0.13 4.20 7.62 -2.91 -0.02 4.18 16 29 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.13 3.82 7.64 -2.91 -0.02 3.80 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -72.34 299.87 5.68 -66.67 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.00 Total: 9.32 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 2.91 Total: -21.78 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.30 Total: -57.07 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -0.20 Total: -43.73 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.67 Total: 46.59 kcal Total: -72.34 5.68 -66.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686372.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.237 kcal (2) G-P(sol) polarization free energy of solvation -72.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds