Wall clock time and date at job start Mon Mar 30 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47179 * 2 1 4 4 C 1.50694 * 109.47327 * 240.00133 * 2 1 3 5 5 H 1.07998 * 120.00041 * 240.00452 * 4 2 1 6 6 C 1.37883 * 120.00229 * 59.99541 * 4 2 1 7 7 N 1.31515 * 119.99770 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00157 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.47034 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47363 * 120.00489 * 8 6 4 11 11 H 1.48502 * 109.47277 * 240.00412 * 8 6 4 12 12 O 1.45196 * 109.47065 * 119.99759 * 2 1 3 13 13 C 1.34710 * 117.00281 * 270.00415 * 12 2 1 14 14 O 1.21477 * 119.99765 * 359.97438 * 13 12 2 15 15 C 1.47724 * 120.00349 * 180.02562 * 13 12 2 16 16 C 1.39644 * 120.19102 * 359.97438 * 15 13 12 17 17 C 1.37786 * 119.78271 * 180.02562 * 16 15 13 18 18 C 1.38674 * 120.41909 * 359.97438 * 17 16 15 19 19 C 1.38386 * 120.08650 * 0.03162 * 18 17 16 20 20 C 1.38230 * 120.00024 * 0.02562 * 19 18 17 21 21 C 1.51402 * 109.74242 * 180.02562 * 19 18 17 22 22 C 1.54332 * 105.17258 * 342.79125 * 21 19 18 23 23 C 1.51724 * 130.13306 * 179.85232 * 18 17 16 24 24 H 1.08995 * 109.47442 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47428 * 300.00159 * 1 2 3 26 26 H 1.09000 * 109.46867 * 60.00083 * 1 2 3 27 27 H 0.96993 * 119.99978 * 180.02562 * 7 6 4 28 28 H 1.08008 * 120.10657 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.79056 * 179.97438 * 17 16 15 30 30 H 1.07994 * 119.95167 * 180.02562 * 20 19 18 31 31 H 1.08996 * 110.30423 * 223.86199 * 21 19 18 32 32 H 1.09003 * 110.38082 * 101.75496 * 21 19 18 33 33 H 1.09002 * 110.81833 * 144.63812 * 22 21 19 34 34 H 1.09002 * 110.81847 * 267.97984 * 22 21 19 35 35 H 1.09004 * 110.25191 * 78.30471 * 23 18 17 36 36 H 1.08996 * 110.49609 * 316.06853 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5866 -4.8161 11 1 3.1467 -0.1873 -4.8165 12 8 2.0140 -0.6844 1.1856 13 6 2.2178 0.0667 2.2851 14 8 1.9976 1.2610 2.2541 15 6 2.7100 -0.5616 3.5281 16 6 2.9649 -1.9340 3.5680 17 6 3.4234 -2.5113 4.7321 18 6 3.6337 -1.7382 5.8639 19 6 3.3830 -0.3776 5.8310 20 6 2.9217 0.2123 4.6691 21 6 3.6903 0.2319 7.1824 22 6 3.7345 -0.9597 8.1623 23 6 4.1235 -2.1368 7.2434 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1613 -3.4844 28 1 2.8024 -2.5410 2.6896 29 1 3.6202 -3.5728 4.7632 30 1 2.7266 1.2742 4.6442 31 1 2.9039 0.9294 7.4704 32 1 4.6550 0.7388 7.1597 33 1 4.4911 -0.8014 8.9308 34 1 2.7562 -1.1273 8.6128 35 1 5.2055 -2.2686 7.2362 36 1 3.6326 -3.0525 7.5728 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113686374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:53 Heat of formation + Delta-G solvation = -77.264675 kcal Electronic energy + Delta-G solvation = -18649.239228 eV Core-core repulsion = 15676.545447 eV Total energy + Delta-G solvation = -2972.693781 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.28608 -39.09736 -35.91622 -35.33572 -33.23303 -31.47695 -29.94738 -28.96887 -27.48328 -25.31833 -23.83297 -22.04492 -21.07107 -20.93266 -19.38219 -17.25138 -16.62634 -15.99721 -15.66439 -15.38771 -14.94032 -14.90245 -14.58129 -13.78897 -13.29484 -13.05774 -12.93941 -12.69751 -12.18058 -12.08408 -11.76061 -11.58243 -11.39652 -11.25027 -11.08147 -10.98421 -10.84142 -10.77708 -10.34730 -10.27764 -9.70716 -9.53207 -8.89078 -8.82330 -8.55097 -8.47765 -6.17887 -4.24655 0.92771 1.41198 3.06561 3.24225 3.30623 3.35445 3.61600 3.99053 4.28290 4.35720 4.38999 4.77539 4.94378 5.01815 5.12541 5.15382 5.39232 5.42918 5.50340 5.52233 5.60355 5.69837 5.79757 5.94375 5.98436 6.11246 6.38528 6.52286 6.55212 6.66409 6.90480 6.91756 6.93992 7.16662 7.60244 7.73364 7.93680 8.14385 8.63576 8.88903 9.40689 10.89767 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.042548 B = 0.004071 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.927610 B = 6876.722091 C = 7269.969042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.350 6.350 13 C 0.496 3.504 14 O -0.518 6.518 15 C -0.112 4.112 16 C -0.061 4.061 17 C -0.123 4.123 18 C -0.076 4.076 19 C -0.116 4.116 20 C -0.048 4.048 21 C -0.080 4.080 22 C -0.121 4.121 23 C -0.084 4.084 24 H 0.037 0.963 25 H 0.016 0.984 26 H 0.100 0.900 27 H 0.266 0.734 28 H 0.144 0.856 29 H 0.126 0.874 30 H 0.134 0.866 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -5.437 18.669 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.558 4.558 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.266 6.266 13 C 0.341 3.659 14 O -0.410 6.410 15 C -0.113 4.113 16 C -0.079 4.079 17 C -0.141 4.141 18 C -0.076 4.076 19 C -0.116 4.116 20 C -0.067 4.067 21 C -0.116 4.116 22 C -0.158 4.158 23 C -0.121 4.121 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.055 -4.975 18.451 19.768 hybrid contribution 0.147 -0.230 -1.037 1.073 sum 5.202 -5.206 17.414 18.905 Atomic orbital electron populations 1.22163 0.97498 1.00160 1.01446 1.20674 0.91437 0.94007 0.77630 0.93482 1.21063 1.32419 1.13473 0.88835 0.91214 1.24895 0.94940 0.95107 0.99082 1.69911 1.36132 1.22584 1.24075 0.86213 0.78619 0.79492 0.81773 1.19461 1.20713 1.20745 1.86530 1.75807 1.43207 1.21097 1.20993 0.74994 0.85244 0.84697 1.90758 1.49062 1.16312 1.84852 1.19279 1.05132 0.94363 0.92498 1.21477 0.94414 0.93842 0.98196 1.20597 1.01651 0.99923 0.91885 1.20899 0.97196 0.94222 0.95328 1.20434 1.01189 0.94647 0.95302 1.20693 0.95409 1.00377 0.90174 1.21022 1.02212 0.97901 0.90515 1.22289 1.02091 0.94214 0.97218 1.21150 1.01195 0.98978 0.90728 0.94386 0.96483 0.88195 0.92446 0.83868 0.85608 0.84861 0.90582 0.90167 0.90553 0.90914 0.90013 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.33 37.16 0.35 -3.68 16 2 C 0.21 5.91 2.56 -27.88 -0.07 5.84 16 3 H 0.05 1.43 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.78 8.90 -34.44 -0.31 -15.09 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 O -0.35 -8.63 9.12 -40.52 -0.37 -8.99 16 13 C 0.50 11.18 7.87 34.61 0.27 11.45 16 14 O -0.52 -12.91 15.60 -19.25 -0.30 -13.21 16 15 C -0.11 -2.00 5.87 -105.03 -0.62 -2.61 16 16 C -0.06 -0.94 9.62 -39.22 -0.38 -1.32 16 17 C -0.12 -1.53 10.02 -39.59 -0.40 -1.93 16 18 C -0.08 -0.90 6.15 -103.90 -0.64 -1.54 16 19 C -0.12 -1.48 6.13 -104.23 -0.64 -2.11 16 20 C -0.05 -0.75 9.59 -39.12 -0.38 -1.13 16 21 C -0.08 -0.74 6.77 -26.84 -0.18 -0.92 16 22 C -0.12 -0.89 7.06 -25.35 -0.18 -1.07 16 23 C -0.08 -0.69 6.79 -26.69 -0.18 -0.88 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 28 H 0.14 2.18 7.62 -52.48 -0.40 1.78 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.13 2.07 7.64 -52.49 -0.40 1.67 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -31.34 306.68 -8.72 -40.06 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.84 Total: -0.41 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -3.44 Total: -13.36 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.63 Total: -24.90 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.67 Total: -22.20 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.34 -8.72 -40.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.205 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds