Wall clock time and date at job start Mon Mar 30 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47179 * 2 1 4 4 C 1.50694 * 109.47327 * 240.00133 * 2 1 3 5 5 H 1.07998 * 120.00041 * 240.00452 * 4 2 1 6 6 C 1.37883 * 120.00229 * 59.99541 * 4 2 1 7 7 N 1.31515 * 119.99770 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00157 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.47034 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47363 * 120.00489 * 8 6 4 11 11 H 1.48502 * 109.47277 * 240.00412 * 8 6 4 12 12 O 1.45196 * 109.47065 * 119.99759 * 2 1 3 13 13 C 1.34710 * 117.00281 * 270.00415 * 12 2 1 14 14 O 1.21477 * 119.99765 * 359.97438 * 13 12 2 15 15 C 1.47724 * 120.00349 * 180.02562 * 13 12 2 16 16 C 1.39644 * 120.19102 * 359.97438 * 15 13 12 17 17 C 1.37786 * 119.78271 * 180.02562 * 16 15 13 18 18 C 1.38674 * 120.41909 * 359.97438 * 17 16 15 19 19 C 1.38386 * 120.08650 * 0.03162 * 18 17 16 20 20 C 1.38230 * 120.00024 * 0.02562 * 19 18 17 21 21 C 1.51402 * 109.74242 * 180.02562 * 19 18 17 22 22 C 1.54332 * 105.17258 * 342.79125 * 21 19 18 23 23 C 1.51724 * 130.13306 * 179.85232 * 18 17 16 24 24 H 1.08995 * 109.47442 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47428 * 300.00159 * 1 2 3 26 26 H 1.09000 * 109.46867 * 60.00083 * 1 2 3 27 27 H 0.96993 * 119.99978 * 180.02562 * 7 6 4 28 28 H 1.08008 * 120.10657 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.79056 * 179.97438 * 17 16 15 30 30 H 1.07994 * 119.95167 * 180.02562 * 20 19 18 31 31 H 1.08996 * 110.30423 * 223.86199 * 21 19 18 32 32 H 1.09003 * 110.38082 * 101.75496 * 21 19 18 33 33 H 1.09002 * 110.81833 * 144.63812 * 22 21 19 34 34 H 1.09002 * 110.81847 * 267.97984 * 22 21 19 35 35 H 1.09004 * 110.25191 * 78.30471 * 23 18 17 36 36 H 1.08996 * 110.49609 * 316.06853 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5866 -4.8161 11 1 3.1467 -0.1873 -4.8165 12 8 2.0140 -0.6844 1.1856 13 6 2.2178 0.0667 2.2851 14 8 1.9976 1.2610 2.2541 15 6 2.7100 -0.5616 3.5281 16 6 2.9649 -1.9340 3.5680 17 6 3.4234 -2.5113 4.7321 18 6 3.6337 -1.7382 5.8639 19 6 3.3830 -0.3776 5.8310 20 6 2.9217 0.2123 4.6691 21 6 3.6903 0.2319 7.1824 22 6 3.7345 -0.9597 8.1623 23 6 4.1235 -2.1368 7.2434 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1613 -3.4844 28 1 2.8024 -2.5410 2.6896 29 1 3.6202 -3.5728 4.7632 30 1 2.7266 1.2742 4.6442 31 1 2.9039 0.9294 7.4704 32 1 4.6550 0.7388 7.1597 33 1 4.4911 -0.8014 8.9308 34 1 2.7562 -1.1273 8.6128 35 1 5.2055 -2.2686 7.2362 36 1 3.6326 -3.0525 7.5728 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113686374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:53 Heat of formation + Delta-G solvation = -93.611160 kcal Electronic energy + Delta-G solvation = -18649.948065 eV Core-core repulsion = 15676.545447 eV Total energy + Delta-G solvation = -2973.402618 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.63193 -40.60284 -37.68966 -36.51773 -35.34460 -32.54569 -31.84761 -30.23675 -28.34892 -27.50197 -25.26030 -23.23928 -22.79095 -21.70028 -21.05110 -18.98532 -18.50485 -17.65797 -16.90539 -16.66019 -16.52610 -16.33077 -15.93566 -15.19650 -14.69515 -14.39809 -14.22808 -13.92306 -13.69440 -13.59067 -13.21547 -13.10099 -12.86479 -12.79921 -12.49248 -12.43534 -12.16034 -12.01879 -11.88524 -11.68129 -11.65373 -11.50151 -11.03079 -10.63847 -9.93707 -9.59630 -8.31567 -6.49038 -0.33749 0.31879 1.40565 1.42063 1.53663 1.56178 1.90339 2.39186 2.71428 2.99151 3.44283 3.56202 3.79876 3.97446 4.15857 4.21003 4.27201 4.35196 4.46992 4.65092 4.70551 4.73614 4.77612 4.88787 4.97611 5.00005 5.07679 5.13516 5.18769 5.30908 5.34224 5.41546 5.44904 5.51759 5.57036 5.84844 5.86500 6.00691 6.55706 6.87009 7.22482 8.76953 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.042548 B = 0.004071 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.927610 B = 6876.722091 C = 7269.969042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.069 0.931 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.987 3.013 9 H -0.262 1.262 10 H -0.270 1.270 11 H -0.275 1.275 12 O -0.354 6.354 13 C 0.491 3.509 14 O -0.555 6.555 15 C -0.145 4.145 16 C -0.069 4.069 17 C -0.116 4.116 18 C -0.065 4.065 19 C -0.120 4.120 20 C -0.060 4.060 21 C -0.082 4.082 22 C -0.114 4.114 23 C -0.082 4.082 24 H 0.048 0.952 25 H 0.020 0.980 26 H 0.084 0.916 27 H 0.272 0.728 28 H 0.137 0.863 29 H 0.161 0.839 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 -7.704 20.673 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.810 3.190 9 H -0.186 1.186 10 H -0.195 1.195 11 H -0.201 1.201 12 O -0.271 6.271 13 C 0.338 3.662 14 O -0.449 6.449 15 C -0.146 4.146 16 C -0.087 4.087 17 C -0.134 4.134 18 C -0.065 4.065 19 C -0.120 4.120 20 C -0.079 4.079 21 C -0.119 4.119 22 C -0.151 4.151 23 C -0.118 4.118 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.178 0.822 30 H 0.139 0.861 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.391 -7.248 20.484 22.649 hybrid contribution -0.230 0.498 -1.501 1.598 sum 6.161 -6.750 18.983 21.068 Atomic orbital electron populations 1.21989 0.96627 1.00541 1.00802 1.20427 0.92165 0.92137 0.79005 0.97601 1.21314 1.33545 1.13983 0.89759 0.91275 1.25888 0.94637 0.95670 1.02244 1.70028 1.36570 1.23686 1.25286 0.85071 0.78381 0.78380 0.77169 1.18611 1.19472 1.20059 1.86517 1.76209 1.43153 1.21178 1.21919 0.73949 0.85022 0.85278 1.90716 1.50944 1.17827 1.85392 1.19107 1.08738 0.95802 0.90946 1.21515 0.95048 0.92589 0.99527 1.20918 1.00085 1.01641 0.90755 1.21506 0.94567 0.93565 0.96836 1.20875 0.99770 0.95701 0.95627 1.20709 0.96420 0.99866 0.90857 1.21182 1.02906 0.99050 0.88790 1.22338 1.03404 0.92395 0.97002 1.21311 1.02385 1.00144 0.87984 0.93318 0.96058 0.89781 0.91889 0.84464 0.82155 0.86056 0.90135 0.89033 0.87970 0.90339 0.88113 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.69 9.33 71.98 0.67 -7.02 16 2 C 0.22 12.53 2.56 29.85 0.08 12.61 16 3 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 4 C -0.55 -32.16 8.90 25.60 0.23 -31.93 16 5 H 0.07 3.95 7.81 -2.91 -0.02 3.93 16 6 C 0.02 0.86 5.30 84.66 0.45 1.30 16 7 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 8 Si 0.99 43.55 29.54 68.60 2.03 45.58 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 12 O -0.35 -18.47 9.12 -56.20 -0.51 -18.98 16 13 C 0.49 23.64 7.87 70.33 0.55 24.19 16 14 O -0.56 -29.82 15.60 19.91 0.31 -29.51 16 15 C -0.14 -5.42 5.87 -20.13 -0.12 -5.53 16 16 C -0.07 -2.11 9.62 22.50 0.22 -1.90 16 17 C -0.12 -2.62 10.02 22.27 0.22 -2.40 16 18 C -0.06 -1.32 6.15 -19.40 -0.12 -1.44 16 19 C -0.12 -2.86 6.13 -19.61 -0.12 -2.98 16 20 C -0.06 -1.94 9.59 22.57 0.22 -1.72 16 21 C -0.08 -1.29 6.77 30.52 0.21 -1.09 16 22 C -0.11 -1.16 7.06 31.49 0.22 -0.93 16 23 C -0.08 -0.95 6.79 30.62 0.21 -0.74 16 24 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 4.82 6.07 -2.39 -0.01 4.80 16 27 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.14 4.29 7.62 -2.91 -0.02 4.27 16 29 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.12 4.06 7.64 -2.91 -0.02 4.03 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -71.55 306.68 6.05 -65.50 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.07 Total: 10.66 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 2.91 Total: -19.59 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.24 Total: -53.66 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -0.20 Total: -48.49 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -71.55 6.05 -65.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.111 kcal (2) G-P(sol) polarization free energy of solvation -71.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds