Wall clock time and date at job start Mon Mar 30 2020 06:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34916 * 120.00109 * 2 1 4 4 C 1.46236 * 120.00024 * 179.97438 * 3 2 1 5 5 O 1.21620 * 120.00038 * 359.97438 * 4 3 2 6 6 O 1.34908 * 119.99829 * 179.97438 * 4 3 2 7 7 C 1.42898 * 117.00040 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.46948 * 329.99964 * 7 6 4 9 9 C 1.53001 * 109.47361 * 89.99827 * 7 6 4 10 10 C 1.50697 * 109.47404 * 210.00161 * 7 6 4 11 11 H 1.08001 * 120.00005 * 0.02562 * 10 7 6 12 12 C 1.37869 * 120.00356 * 179.97438 * 10 7 6 13 13 N 1.31521 * 120.00206 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 120.00207 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.47266 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47004 * 120.00211 * 14 12 10 17 17 H 1.48503 * 109.46955 * 240.00026 * 14 12 10 18 18 C 1.47177 * 120.00136 * 179.97438 * 2 1 3 19 19 C 1.39855 * 120.16814 * 295.00352 * 18 2 1 20 20 C 1.37890 * 119.82316 * 179.97438 * 19 18 2 21 21 C 1.38404 * 120.17221 * 359.97438 * 20 19 18 22 22 C 1.38409 * 120.34813 * 0.02562 * 21 20 19 23 23 C 1.37888 * 120.17308 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47643 * 270.00345 * 1 2 3 25 25 H 1.09003 * 109.47115 * 30.00581 * 1 2 3 26 26 H 1.09003 * 109.46932 * 149.99862 * 1 2 3 27 27 H 1.08003 * 120.00103 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.46743 * 300.00328 * 9 7 6 29 29 H 1.08997 * 109.46726 * 60.00097 * 9 7 6 30 30 H 1.08995 * 109.46949 * 180.02562 * 9 7 6 31 31 H 0.96997 * 120.00490 * 179.97438 * 13 12 10 32 32 H 1.07999 * 120.09087 * 359.70482 * 19 18 2 33 33 H 1.08000 * 119.91186 * 180.02562 * 20 19 18 34 34 H 1.07998 * 119.82759 * 179.97438 * 21 20 19 35 35 H 1.07996 * 119.91473 * 180.02562 * 22 21 20 36 36 H 1.07996 * 120.08508 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1816 1.1684 0.0000 4 6 3.6439 1.1684 0.0006 5 8 4.2520 0.1151 0.0015 6 8 4.3185 2.3367 0.0000 7 6 5.7455 2.2620 0.0001 8 1 6.0618 1.3544 0.5144 9 6 6.2549 2.2346 -1.4424 10 6 6.3116 3.4647 0.7100 11 1 5.6479 4.2114 1.1205 12 6 7.6766 3.6115 0.8363 13 7 8.4848 2.7015 0.3378 14 14 8.3782 5.1028 1.7157 15 1 7.2672 5.9709 2.1816 16 1 9.1804 4.6569 2.8831 17 1 9.2450 5.8656 0.7818 18 6 2.2429 -1.2746 0.0006 19 6 2.1517 -2.1383 1.0968 20 6 2.8438 -3.3309 1.0895 21 6 3.6267 -3.6743 0.0011 22 6 3.7220 -2.8249 -1.0875 23 6 3.0361 -1.6287 -1.0955 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6416 2.1037 -0.0004 28 1 5.8454 1.3646 -1.9558 29 1 5.9386 3.1421 -1.9566 30 1 7.3433 2.1771 -1.4423 31 1 9.4452 2.8049 0.4263 32 1 1.5444 -1.8699 1.9485 33 1 2.7741 -3.9991 1.9351 34 1 4.1667 -4.6095 0.0015 35 1 4.3346 -3.1000 -1.9333 36 1 3.1118 -0.9668 -1.9454 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113691868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:59 Heat of formation + Delta-G solvation = -48.726544 kcal Electronic energy + Delta-G solvation = -19066.120032 eV Core-core repulsion = 16094.663758 eV Total energy + Delta-G solvation = -2971.456275 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.81656 -38.60596 -36.01786 -34.60188 -33.17498 -30.66231 -29.97025 -29.48766 -27.97089 -25.28784 -23.41695 -22.27165 -21.95547 -20.06252 -18.63752 -17.26207 -16.56305 -16.24272 -15.42331 -14.96235 -14.69225 -14.57343 -14.14421 -13.81441 -13.29876 -13.19567 -13.09002 -12.47445 -12.20427 -12.17626 -12.09478 -11.72617 -11.19688 -11.05180 -10.91757 -10.85668 -10.79138 -10.32116 -10.24814 -9.74724 -9.43244 -9.13779 -8.81603 -8.58317 -8.44469 -8.04951 -6.14204 -4.20748 1.11331 1.71655 1.83486 3.25663 3.32203 3.37482 3.66508 3.83822 4.05945 4.38009 4.65707 5.09770 5.16125 5.18906 5.27312 5.31445 5.37032 5.45197 5.67209 5.72378 5.82323 5.87457 6.11623 6.26515 6.33264 6.50368 6.69541 6.72069 6.75737 6.82273 6.94103 6.98269 7.24338 7.25825 7.65393 7.79240 8.00638 8.20562 8.72936 8.98876 9.45098 10.93346 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.026268 B = 0.005138 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.695947 B = 5448.251504 C = 5934.960404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.013 4.013 3 C -0.174 4.174 4 C 0.473 3.527 5 O -0.504 6.504 6 O -0.348 6.348 7 C 0.212 3.788 8 H 0.044 0.956 9 C -0.154 4.154 10 C -0.518 4.518 11 H 0.068 0.932 12 C 0.061 3.939 13 N -0.889 5.889 14 Si 0.910 3.090 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.281 1.281 18 C -0.049 4.049 19 C -0.106 4.106 20 C -0.129 4.129 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.049 4.049 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.014 0.986 29 H 0.035 0.965 30 H 0.097 0.903 31 H 0.265 0.735 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.299 -8.706 -1.540 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.013 4.013 3 C -0.193 4.193 4 C 0.319 3.681 5 O -0.395 6.395 6 O -0.264 6.264 7 C 0.159 3.841 8 H 0.062 0.938 9 C -0.211 4.211 10 C -0.556 4.556 11 H 0.086 0.914 12 C -0.140 4.140 13 N -0.527 5.527 14 Si 0.737 3.263 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.049 4.049 19 C -0.124 4.124 20 C -0.147 4.147 21 C -0.135 4.135 22 C -0.141 4.141 23 C -0.067 4.067 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.157 0.843 28 H 0.033 0.967 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.867 -9.014 -1.559 16.613 hybrid contribution 0.800 0.823 0.454 1.234 sum -13.067 -8.191 -1.105 15.461 Atomic orbital electron populations 1.20896 0.89983 1.03379 1.02995 1.21151 0.95519 0.91813 0.92864 1.22353 0.91590 0.98550 1.06842 1.21224 0.89452 0.83263 0.74178 1.90888 1.70749 1.32156 1.45734 1.86175 1.26137 1.32220 1.81861 1.20180 0.70333 0.99106 0.94522 0.93794 1.22163 1.04808 0.97394 0.96776 1.21088 0.91664 1.06656 1.36222 0.91380 1.24892 0.96456 0.97066 0.95619 1.69918 1.03642 1.34175 1.45015 0.86245 0.78962 0.81914 0.79170 1.19492 1.20788 1.20731 1.18700 0.97840 0.93079 0.95312 1.21028 1.00203 0.94010 0.97157 1.20884 0.98441 0.97063 0.98352 1.21110 0.98858 0.99540 0.93991 1.20925 0.99662 0.94770 0.98759 1.20970 0.93556 0.95052 0.97163 0.90216 0.90645 0.90902 0.84320 0.96686 0.94613 0.88461 0.92552 0.86551 0.86512 0.86654 0.86431 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.02 36.00 0.36 -0.71 16 2 C -0.01 -0.18 5.49 -102.17 -0.56 -0.74 16 3 C -0.17 -2.81 9.80 -37.55 -0.37 -3.18 16 4 C 0.47 10.27 7.71 33.94 0.26 10.53 16 5 O -0.50 -11.86 11.44 -19.36 -0.22 -12.09 16 6 O -0.35 -8.63 9.75 -41.06 -0.40 -9.03 16 7 C 0.21 5.87 2.51 -27.88 -0.07 5.80 16 8 H 0.04 1.35 7.11 -51.93 -0.37 0.98 16 9 C -0.15 -4.01 9.31 37.16 0.35 -3.67 16 10 C -0.52 -14.97 8.88 -34.44 -0.31 -15.28 16 11 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 12 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 13 N -0.89 -25.87 11.32 55.43 0.63 -25.24 16 14 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 C -0.05 -0.76 3.83 -105.06 -0.40 -1.17 16 19 C -0.11 -1.51 9.78 -39.10 -0.38 -1.90 16 20 C -0.13 -1.76 10.03 -39.65 -0.40 -2.16 16 21 C -0.12 -1.62 10.04 -39.46 -0.40 -2.02 16 22 C -0.12 -1.86 10.03 -39.65 -0.40 -2.26 16 23 C -0.05 -0.80 6.97 -39.11 -0.27 -1.07 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 27 H 0.14 1.87 8.06 -52.48 -0.42 1.44 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 2.71 6.07 -51.93 -0.32 2.39 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.84 8.05 -52.49 -0.42 1.41 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -32.22 311.34 -7.88 -40.10 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.88 Total: 1.27 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.68 Total: -16.17 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.63 Total: -25.24 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.62 Total: -21.12 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.22 -7.88 -40.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.631 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds