Wall clock time and date at job start Mon Mar 30 2020 06:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47478 * 2 1 4 4 H 1.08998 * 109.47203 * 54.83678 * 3 2 1 5 5 C 1.50697 * 109.47424 * 174.84680 * 3 2 1 6 6 H 1.07998 * 120.00561 * 119.99434 * 5 3 2 7 7 C 1.37883 * 119.99481 * 299.99740 * 5 3 2 8 8 N 1.31511 * 120.00149 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99793 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47501 * 89.99756 * 9 7 5 11 11 H 1.48504 * 109.46936 * 209.99951 * 9 7 5 12 12 H 1.48500 * 109.47181 * 329.99677 * 9 7 5 13 13 N 1.46507 * 109.46942 * 294.84156 * 3 2 1 14 14 C 1.39436 * 120.00163 * 157.88146 * 13 3 2 15 15 C 1.38998 * 119.93925 * 355.31683 * 14 13 3 16 16 C 1.37759 * 120.13918 * 179.97438 * 15 14 13 17 17 C 1.39775 * 120.00856 * 0.02562 * 16 15 14 18 18 C 1.43194 * 120.05958 * 180.02562 * 17 16 15 19 19 N 8.95822 * 88.57982 * 349.90037 * 2 1 3 20 20 C 1.39821 * 119.87856 * 359.77094 * 17 16 15 21 21 C 1.38067 * 119.86411 * 0.46376 * 20 17 16 22 22 O 1.36016 * 120.00718 * 179.79773 * 21 20 17 23 23 C 1.42903 * 117.00056 * 359.71708 * 22 21 20 24 24 H 1.09000 * 109.47526 * 175.45025 * 1 2 3 25 25 H 1.09001 * 109.47075 * 295.44662 * 1 2 3 26 26 H 1.09000 * 109.47423 * 55.44696 * 1 2 3 27 27 H 1.09003 * 109.46787 * 239.99643 * 2 1 3 28 28 H 1.09007 * 109.46992 * 119.99942 * 2 1 3 29 29 H 0.96999 * 120.00186 * 179.97438 * 8 7 5 30 30 H 0.97003 * 120.00073 * 337.88176 * 13 3 2 31 31 H 1.08000 * 119.93155 * 359.97438 * 15 14 13 32 32 H 1.07995 * 119.99754 * 180.02562 * 16 15 14 33 33 H 1.07999 * 120.06920 * 180.25732 * 20 17 16 34 34 H 1.09007 * 109.47144 * 300.00807 * 23 22 21 35 35 H 1.08992 * 109.47258 * 180.02562 * 23 22 21 36 36 H 1.09002 * 109.46893 * 60.00249 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6032 1.9823 0.8401 5 6 3.5416 1.4443 0.1276 6 1 4.1489 1.8881 -0.6474 7 6 4.1401 0.8794 1.2339 8 7 3.4005 0.3394 2.1778 9 14 6.0013 0.8823 1.3925 10 1 6.4363 2.1159 2.0955 11 1 6.4339 -0.3080 2.1679 12 1 6.6134 0.8414 0.0401 13 7 1.6557 2.0963 -1.2535 14 6 1.5832 3.4871 -1.3206 15 6 1.7801 4.2482 -0.1744 16 6 1.7099 5.6226 -0.2361 17 6 1.4396 6.2548 -1.4531 18 6 1.3668 7.6834 -1.5186 19 7 1.3079 8.8167 -1.5704 20 6 1.2456 5.4899 -2.6073 21 6 1.3123 4.1126 -2.5386 22 8 1.1199 3.3655 -3.6589 23 6 0.8470 4.0719 -4.8708 24 1 -0.3634 -1.0244 -0.0815 25 1 -0.3633 0.4416 0.9280 26 1 -0.3634 0.5828 -0.8464 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8216 -0.0583 2.9559 30 1 1.4518 1.5616 -2.0367 31 1 1.9887 3.7611 0.7667 32 1 1.8637 6.2117 0.6558 33 1 1.0406 5.9754 -3.5500 34 1 -0.0627 4.6604 -4.7513 35 1 0.7141 3.3592 -5.6846 36 1 1.6811 4.7349 -5.1006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130022910.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:12 Heat of formation + Delta-G solvation = 10.586408 kcal Electronic energy + Delta-G solvation = -19034.680531 eV Core-core repulsion = 16098.089010 eV Total energy + Delta-G solvation = -2936.591521 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.94669 -37.47265 -36.67967 -35.40313 -32.91208 -31.53723 -29.93101 -28.87522 -27.13203 -26.68399 -23.47238 -22.26549 -21.98237 -19.85867 -18.88034 -16.89009 -16.62319 -16.37466 -15.68972 -15.49632 -14.78944 -14.00246 -13.89179 -13.60256 -13.51393 -13.31243 -13.14753 -12.66326 -12.35375 -12.25445 -12.00747 -11.79262 -11.40200 -11.21260 -11.19127 -10.92552 -10.77407 -10.70721 -10.23678 -10.03573 -9.92460 -9.83006 -8.92529 -8.51862 -8.22975 -6.60238 -6.10825 -4.25848 1.40046 1.82941 3.00495 3.22936 3.30509 3.33667 3.40890 3.52587 4.18621 4.34381 4.37183 4.44090 5.09949 5.12630 5.18882 5.25448 5.41695 5.54573 5.72524 5.92763 6.04851 6.11159 6.20795 6.30670 6.38111 6.55744 6.72521 6.78097 6.90008 6.94439 7.15748 7.29229 7.57670 7.58623 7.80096 7.86114 8.13396 8.15232 8.57581 8.81990 9.42292 10.86129 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.006286 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.193678 B = 4452.928728 C = 5184.610852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.045 0.955 5 C -0.527 4.527 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.264 3.736 15 C -0.173 4.173 16 C -0.040 4.040 17 C -0.104 4.104 18 C 0.278 3.722 19 N -0.464 5.464 20 C -0.111 4.111 21 C 0.022 3.978 22 O -0.319 6.319 23 C 0.033 3.967 24 H 0.035 0.965 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.108 0.892 29 H 0.264 0.736 30 H 0.394 0.606 31 H 0.150 0.850 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 2.735 -7.775 9.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.166 3.834 4 H 0.062 0.938 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.323 5.323 14 C 0.150 3.850 15 C -0.197 4.197 16 C -0.062 4.062 17 C -0.111 4.111 18 C -0.035 4.035 19 N -0.141 5.141 20 C -0.133 4.133 21 C -0.026 4.026 22 O -0.233 6.233 23 C -0.063 4.063 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.126 0.874 29 H 0.074 0.926 30 H 0.228 0.772 31 H 0.167 0.833 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.229 3.994 -7.490 9.970 hybrid contribution 1.016 -0.454 -0.328 1.160 sum -4.213 3.541 -7.818 9.560 Atomic orbital electron populations 1.21832 0.98715 0.99455 1.00532 1.21863 0.92204 0.99306 1.03392 1.18918 0.94353 0.89436 0.80709 0.93785 1.21537 0.91301 1.38104 1.05647 0.92086 1.24892 0.98374 0.94857 0.95493 1.69834 1.35106 1.38303 1.09505 0.86533 0.85319 0.77636 0.78207 1.20499 1.21203 1.19937 1.45501 1.69454 1.01714 1.15635 1.17548 0.91636 0.85636 0.90208 1.20641 1.08267 0.92488 0.98293 1.20780 0.95711 0.94133 0.95540 1.15336 1.17011 0.83638 0.95150 1.25826 0.92206 0.92694 0.92793 1.81172 1.12100 1.12335 1.08473 1.20671 1.03172 0.91780 0.97717 1.18176 1.08897 0.89345 0.86203 1.85996 1.87352 1.34687 1.15300 1.22919 1.00047 0.98109 0.85209 0.94558 0.93525 0.94190 0.94303 0.87405 0.92593 0.77213 0.83274 0.85740 0.85727 0.93172 0.88812 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.85 37.16 0.37 -2.22 16 2 C -0.13 -2.67 5.30 -26.74 -0.14 -2.82 16 3 C 0.27 5.78 1.68 -69.08 -0.12 5.67 16 4 H 0.04 1.03 6.44 -51.93 -0.33 0.69 16 5 C -0.53 -12.92 8.68 -34.44 -0.30 -13.22 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.66 5.29 -17.82 -0.09 1.56 16 8 N -0.89 -22.83 11.29 55.43 0.63 -22.21 16 9 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -13.22 4.63 -53.15 -0.25 -13.46 16 14 C 0.26 4.66 6.60 -83.62 -0.55 4.11 16 15 C -0.17 -3.00 9.14 -39.48 -0.36 -3.36 16 16 C -0.04 -0.60 9.74 -39.18 -0.38 -0.99 16 17 C -0.10 -1.55 5.74 -106.81 -0.61 -2.16 16 18 C 0.28 4.31 15.32 -22.47 -0.34 3.96 16 19 N -0.46 -7.89 18.54 41.84 0.78 -7.12 16 20 C -0.11 -1.58 8.74 -39.05 -0.34 -1.92 16 21 C 0.02 0.35 6.70 -39.15 -0.26 0.08 16 22 O -0.32 -4.62 9.73 -19.79 -0.19 -4.81 16 23 C 0.03 0.33 9.81 101.05 0.99 1.32 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.66 7.61 -51.93 -0.40 0.26 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.11 2.54 5.95 -51.93 -0.31 2.23 16 29 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.39 7.02 7.90 -40.82 -0.32 6.70 16 31 H 0.15 2.81 6.17 -52.49 -0.32 2.49 16 32 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.12 1.48 6.28 -52.49 -0.33 1.15 16 34 H 0.05 0.45 7.67 -51.92 -0.40 0.05 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 LS Contribution 310.07 15.07 4.67 4.67 Total: -1.00 -26.07 310.07 -6.00 -32.07 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.47 Total: 5.83 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.15 Total: -9.97 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 1.16 Total: -42.79 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.19 Total: -4.81 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.07 -6.00 -32.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130022910.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.656 kcal (2) G-P(sol) polarization free energy of solvation -26.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds