Wall clock time and date at job start Mon Mar 30 2020 06:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47478 * 2 1 4 4 H 1.08998 * 109.47203 * 54.83678 * 3 2 1 5 5 C 1.50697 * 109.47424 * 174.84680 * 3 2 1 6 6 H 1.07998 * 120.00561 * 119.99434 * 5 3 2 7 7 C 1.37883 * 119.99481 * 299.99740 * 5 3 2 8 8 N 1.31511 * 120.00149 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99793 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47501 * 89.99756 * 9 7 5 11 11 H 1.48504 * 109.46936 * 209.99951 * 9 7 5 12 12 H 1.48500 * 109.47181 * 329.99677 * 9 7 5 13 13 N 1.46507 * 109.46942 * 294.84156 * 3 2 1 14 14 C 1.39436 * 120.00163 * 157.88146 * 13 3 2 15 15 C 1.38998 * 119.93925 * 355.31683 * 14 13 3 16 16 C 1.37759 * 120.13918 * 179.97438 * 15 14 13 17 17 C 1.39775 * 120.00856 * 0.02562 * 16 15 14 18 18 C 1.43194 * 120.05958 * 180.02562 * 17 16 15 19 19 N 8.95822 * 88.57982 * 349.90037 * 2 1 3 20 20 C 1.39821 * 119.87856 * 359.77094 * 17 16 15 21 21 C 1.38067 * 119.86411 * 0.46376 * 20 17 16 22 22 O 1.36016 * 120.00718 * 179.79773 * 21 20 17 23 23 C 1.42903 * 117.00056 * 359.71708 * 22 21 20 24 24 H 1.09000 * 109.47526 * 175.45025 * 1 2 3 25 25 H 1.09001 * 109.47075 * 295.44662 * 1 2 3 26 26 H 1.09000 * 109.47423 * 55.44696 * 1 2 3 27 27 H 1.09003 * 109.46787 * 239.99643 * 2 1 3 28 28 H 1.09007 * 109.46992 * 119.99942 * 2 1 3 29 29 H 0.96999 * 120.00186 * 179.97438 * 8 7 5 30 30 H 0.97003 * 120.00073 * 337.88176 * 13 3 2 31 31 H 1.08000 * 119.93155 * 359.97438 * 15 14 13 32 32 H 1.07995 * 119.99754 * 180.02562 * 16 15 14 33 33 H 1.07999 * 120.06920 * 180.25732 * 20 17 16 34 34 H 1.09007 * 109.47144 * 300.00807 * 23 22 21 35 35 H 1.08992 * 109.47258 * 180.02562 * 23 22 21 36 36 H 1.09002 * 109.46893 * 60.00249 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6032 1.9823 0.8401 5 6 3.5416 1.4443 0.1276 6 1 4.1489 1.8881 -0.6474 7 6 4.1401 0.8794 1.2339 8 7 3.4005 0.3394 2.1778 9 14 6.0013 0.8823 1.3925 10 1 6.4363 2.1159 2.0955 11 1 6.4339 -0.3080 2.1679 12 1 6.6134 0.8414 0.0401 13 7 1.6557 2.0963 -1.2535 14 6 1.5832 3.4871 -1.3206 15 6 1.7801 4.2482 -0.1744 16 6 1.7099 5.6226 -0.2361 17 6 1.4396 6.2548 -1.4531 18 6 1.3668 7.6834 -1.5186 19 7 1.3079 8.8167 -1.5704 20 6 1.2456 5.4899 -2.6073 21 6 1.3123 4.1126 -2.5386 22 8 1.1199 3.3655 -3.6589 23 6 0.8470 4.0719 -4.8708 24 1 -0.3634 -1.0244 -0.0815 25 1 -0.3633 0.4416 0.9280 26 1 -0.3634 0.5828 -0.8464 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8216 -0.0583 2.9559 30 1 1.4518 1.5616 -2.0367 31 1 1.9887 3.7611 0.7667 32 1 1.8637 6.2117 0.6558 33 1 1.0406 5.9754 -3.5500 34 1 -0.0627 4.6604 -4.7513 35 1 0.7141 3.3592 -5.6846 36 1 1.6811 4.7349 -5.1006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130022910.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:12 Heat of formation + Delta-G solvation = -2.989120 kcal Electronic energy + Delta-G solvation = -19035.269210 eV Core-core repulsion = 16098.089010 eV Total energy + Delta-G solvation = -2937.180200 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15588 -38.66932 -38.11148 -36.78762 -34.56557 -33.15805 -31.14591 -30.23497 -28.37456 -28.05323 -25.11243 -23.59441 -23.30149 -21.38734 -20.11318 -18.46218 -18.24288 -17.57536 -17.05720 -16.50459 -16.41212 -15.49309 -15.09802 -14.95024 -14.77998 -14.73624 -14.61768 -14.09724 -13.63790 -13.54866 -13.33564 -13.13503 -13.06320 -12.83064 -12.63623 -12.28002 -12.19075 -11.88473 -11.82907 -11.67120 -11.51763 -11.43025 -10.54323 -10.40105 -9.44451 -8.21455 -7.78690 -6.21091 0.13389 0.59582 1.43254 1.47052 1.54235 1.74661 2.12623 2.43219 2.50122 2.87802 3.10486 3.12325 3.19946 3.96366 4.23661 4.36204 4.53148 4.53833 4.55437 4.63528 4.64795 4.80377 4.85501 4.96227 5.10169 5.14857 5.25943 5.36010 5.41534 5.55019 5.63580 5.76353 5.85179 5.97548 6.32762 6.35635 6.59933 6.67178 6.95210 7.16820 7.50091 8.93715 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.006286 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.193678 B = 4452.928728 C = 5184.610852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.279 3.721 4 H 0.022 0.978 5 C -0.533 4.533 6 H 0.046 0.954 7 C 0.027 3.973 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.240 3.760 15 C -0.186 4.186 16 C -0.036 4.036 17 C -0.095 4.095 18 C 0.296 3.704 19 N -0.485 5.485 20 C -0.102 4.102 21 C 0.029 3.971 22 O -0.335 6.335 23 C 0.021 3.979 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.263 0.737 30 H 0.398 0.602 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.154 0.846 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 3.616 -9.375 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.040 0.960 5 C -0.572 4.572 6 H 0.064 0.936 7 C -0.173 4.173 8 N -0.548 5.548 9 Si 0.771 3.229 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.330 5.330 14 C 0.128 3.872 15 C -0.210 4.210 16 C -0.058 4.058 17 C -0.102 4.102 18 C -0.017 4.017 19 N -0.162 5.162 20 C -0.124 4.124 21 C -0.019 4.019 22 O -0.249 6.249 23 C -0.073 4.073 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.233 0.767 31 H 0.144 0.856 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.682 4.906 -9.115 11.809 hybrid contribution 1.127 -0.633 0.076 1.294 sum -4.555 4.274 -9.039 10.987 Atomic orbital electron populations 1.21698 0.96131 1.00839 1.00699 1.21695 0.94489 0.98242 1.01866 1.18543 0.92573 0.89900 0.81437 0.95987 1.21748 0.92997 1.37426 1.05057 0.93568 1.25456 1.01374 0.94962 0.95510 1.69936 1.36108 1.39004 1.09791 0.85766 0.81785 0.77474 0.77836 1.20484 1.20956 1.20100 1.45141 1.70925 1.02282 1.14673 1.17780 0.92831 0.85168 0.91403 1.20513 1.09530 0.93409 0.97556 1.20889 0.94996 0.93329 0.96562 1.15362 1.16229 0.83358 0.95257 1.25713 0.91497 0.92432 0.92054 1.81207 1.12791 1.12977 1.09247 1.20921 1.01756 0.91132 0.98630 1.18143 1.07908 0.89764 0.86100 1.85992 1.87208 1.35691 1.16049 1.23270 1.01057 0.99093 0.83869 0.92671 0.94154 0.93005 0.94319 0.90304 0.92727 0.76747 0.85601 0.84015 0.82826 0.91697 0.86648 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.85 71.98 0.71 -3.98 16 2 C -0.12 -5.22 5.30 30.59 0.16 -5.05 16 3 C 0.28 12.35 1.68 44.24 0.07 12.42 16 4 H 0.02 1.08 6.44 -2.39 -0.02 1.07 16 5 C -0.53 -26.74 8.68 25.60 0.22 -26.52 16 6 H 0.05 2.40 7.81 -2.91 -0.02 2.38 16 7 C 0.03 1.38 5.29 84.66 0.45 1.83 16 8 N -0.91 -47.76 11.29 21.45 0.24 -47.52 16 9 Si 0.94 41.49 29.54 68.60 2.03 43.51 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 N -0.71 -26.77 4.63 -322.07 -1.49 -28.26 16 14 C 0.24 8.41 6.60 38.44 0.25 8.66 16 15 C -0.19 -6.50 9.14 22.34 0.20 -6.29 16 16 C -0.04 -1.06 9.74 22.53 0.22 -0.84 16 17 C -0.10 -2.61 5.74 -21.28 -0.12 -2.73 16 18 C 0.30 8.43 15.32 88.33 1.35 9.79 16 19 N -0.48 -15.44 18.54 19.00 0.35 -15.09 16 20 C -0.10 -2.61 8.74 22.61 0.20 -2.41 16 21 C 0.03 0.87 6.70 22.55 0.15 1.02 16 22 O -0.33 -8.93 9.73 -93.74 -0.91 -9.85 16 23 C 0.02 0.36 9.81 113.37 1.11 1.47 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.65 7.61 -2.39 -0.02 1.63 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 3.80 5.95 -2.38 -0.01 3.79 16 29 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 30 H 0.40 14.09 7.90 -92.71 -0.73 13.35 16 31 H 0.13 4.97 6.17 -2.91 -0.02 4.96 16 32 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.15 3.01 6.28 -2.91 -0.02 3.00 16 34 H 0.06 0.91 7.67 -2.38 -0.02 0.89 16 35 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 Total: -1.00 -55.76 310.07 5.58 -50.18 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.37 Total: 19.66 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 4.99 Total: -12.64 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -0.90 Total: -90.87 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.91 Total: -9.85 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -55.76 5.58 -50.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130022910.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.195 kcal (2) G-P(sol) polarization free energy of solvation -55.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds