Wall clock time and date at job start Mon Mar 30 2020 06:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.36012 * 116.99758 * 2 1 4 4 C 1.38069 * 120.01006 * 359.97438 * 3 2 1 5 5 C 1.39820 * 119.86841 * 180.02562 * 4 3 2 6 6 C 1.43194 * 120.06196 * 180.02562 * 5 4 3 7 7 N 5.84064 * 81.25776 * 359.97438 * 2 1 3 8 8 C 1.39774 * 119.87627 * 359.97438 * 5 4 3 9 9 C 1.37757 * 120.01331 * 359.74569 * 8 5 4 10 10 C 1.39007 * 120.13086 * 0.50979 * 9 8 5 11 11 N 1.39445 * 119.93554 * 179.76607 * 10 9 8 12 12 C 1.46504 * 119.99768 * 359.71941 * 11 10 9 13 13 C 1.53006 * 109.46883 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47242 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99967 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00542 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00563 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99513 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46964 * 90.00276 * 19 17 15 21 21 H 1.48502 * 109.47035 * 210.00108 * 19 17 15 22 22 H 1.48499 * 109.47257 * 330.00183 * 19 17 15 23 23 H 1.08998 * 109.46981 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46463 * 299.99531 * 1 2 3 25 25 H 1.08996 * 109.46881 * 59.99696 * 1 2 3 26 26 H 1.07997 * 120.06362 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.99135 * 179.97438 * 8 5 4 28 28 H 1.07994 * 119.93143 * 180.25018 * 9 8 5 29 29 H 0.96992 * 120.00265 * 179.72327 * 11 10 9 30 30 H 1.09001 * 109.46891 * 60.00400 * 12 11 10 31 31 H 1.08993 * 109.47378 * 299.99772 * 12 11 10 32 32 H 1.09001 * 109.46801 * 300.00349 * 13 12 11 33 33 H 1.09001 * 109.46998 * 59.99945 * 13 12 11 34 34 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 35 35 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 36 36 H 0.96999 * 120.00061 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2947 2.3699 -0.0005 5 6 1.9325 3.6142 -0.0011 6 6 1.1568 4.8179 -0.0011 7 7 0.5414 5.7728 -0.0026 8 6 3.3286 3.6810 -0.0005 9 6 4.0739 2.5224 0.0058 10 6 3.4403 1.2851 0.0010 11 7 4.1987 0.1149 0.0026 12 6 5.6618 0.1903 0.0030 13 6 6.2453 -1.2241 0.0054 14 6 7.7732 -1.1455 0.0065 15 6 8.3479 -2.5385 0.0082 16 1 7.6893 -3.3944 0.0081 17 6 9.7146 -2.7205 0.0100 18 7 10.2162 -3.9363 0.0110 19 14 10.8539 -1.2401 0.0110 20 1 11.1541 -0.8475 1.4113 21 1 12.1176 -1.5875 -0.6874 22 1 10.1958 -0.1085 -0.6901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.2161 2.3148 -0.0005 27 1 3.8232 4.6411 -0.0014 28 1 5.1525 2.5755 0.0103 29 1 3.7576 -0.7489 0.0033 30 1 5.9978 0.7231 0.8926 31 1 5.9985 0.7211 -0.8873 32 1 5.9084 -1.7546 0.8961 33 1 5.9092 -1.7573 -0.8839 34 1 8.1103 -0.6148 -0.8838 35 1 8.1089 -0.6125 0.8961 36 1 11.1777 -4.0642 0.0119 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130026212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:44 Heat of formation + Delta-G solvation = 6.518696 kcal Electronic energy + Delta-G solvation = -17960.692434 eV Core-core repulsion = 15023.924523 eV Total energy + Delta-G solvation = -2936.767910 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51429 -37.96327 -37.04248 -35.74061 -33.72138 -31.88999 -30.52852 -29.68050 -27.57162 -26.84652 -23.60537 -22.98279 -21.63668 -20.36525 -19.45759 -17.38227 -16.98581 -16.74468 -16.18843 -15.99097 -15.00667 -14.73326 -14.41270 -14.15069 -14.04516 -14.00460 -13.59576 -13.05880 -12.74311 -12.69896 -12.48617 -12.17708 -12.04140 -11.66859 -11.50095 -11.25336 -11.05942 -10.98261 -10.26588 -10.03536 -9.82464 -9.75426 -9.28135 -8.83352 -8.60170 -7.29925 -6.10256 -4.09447 0.80632 1.21346 2.58226 2.88899 3.03120 3.26533 3.34543 3.36392 3.42409 3.77958 3.86738 4.39468 4.56127 4.81292 4.84489 4.93353 5.12194 5.22406 5.23345 5.27875 5.39283 5.51178 5.52383 5.75565 5.86920 5.94095 6.19776 6.31950 6.35476 6.45711 6.70454 6.93264 7.15739 7.29355 7.33075 7.42981 7.69986 7.72680 8.46188 8.93905 9.51418 11.03075 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.029562 B = 0.003555 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.947080 B = 7873.838524 C = 8789.734255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.043 3.957 4 C -0.112 4.112 5 C -0.079 4.079 6 C 0.269 3.731 7 N -0.444 5.444 8 C -0.041 4.041 9 C -0.182 4.182 10 C 0.241 3.759 11 N -0.723 5.723 12 C 0.113 3.887 13 C -0.113 4.113 14 C -0.010 4.010 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.902 5.902 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.099 0.901 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.141 0.859 29 H 0.409 0.591 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.990 11.193 -0.042 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C -0.006 4.006 4 C -0.135 4.135 5 C -0.085 4.085 6 C -0.045 4.045 7 N -0.120 5.120 8 C -0.062 4.062 9 C -0.206 4.206 10 C 0.131 3.869 11 N -0.348 5.348 12 C -0.010 4.010 13 C -0.151 4.151 14 C -0.048 4.048 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 H 0.118 0.882 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.159 0.841 29 H 0.244 0.756 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.448 12.348 -0.046 21.375 hybrid contribution 0.536 0.048 0.021 0.539 sum -16.912 12.396 -0.025 20.968 Atomic orbital electron populations 1.23021 0.78352 1.03967 1.01154 1.86024 1.21255 1.25905 1.89945 1.18155 0.90235 0.84775 1.07394 1.20829 0.99633 0.90227 1.02764 1.15418 0.91517 0.86519 1.15068 1.25716 0.93121 0.92847 0.92839 1.81234 1.09020 1.10874 1.10876 1.20805 0.91161 0.98597 0.95651 1.20464 1.00559 0.89421 1.10108 1.17535 0.87189 0.88418 0.93779 1.45000 1.06145 1.05660 1.78031 1.21775 0.77763 1.00432 1.01073 1.21678 0.98656 0.92828 1.01984 1.19495 0.90475 0.98262 0.96540 1.21094 0.92287 0.91581 1.51190 0.91021 1.25041 0.98298 0.95699 0.94467 1.69910 1.12570 1.20775 1.50855 0.86765 0.80319 0.83571 0.78540 1.20250 1.21373 1.18937 0.88228 0.92775 0.92781 0.84945 0.85094 0.84117 0.75567 0.91989 0.91977 0.92034 0.92007 0.96345 0.96775 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.25 9.72 -19.78 -0.19 -3.45 16 3 C 0.04 0.46 6.70 -39.15 -0.26 0.19 16 4 C -0.11 -1.06 8.74 -39.05 -0.34 -1.40 16 5 C -0.08 -0.78 5.74 -106.81 -0.61 -1.40 16 6 C 0.27 3.04 15.32 -22.47 -0.34 2.69 16 7 N -0.44 -5.94 18.54 41.84 0.78 -5.16 16 8 C -0.04 -0.38 9.74 -39.18 -0.38 -0.76 16 9 C -0.18 -1.86 9.28 -39.47 -0.37 -2.23 16 10 C 0.24 2.76 6.67 -83.62 -0.56 2.21 16 11 N -0.72 -8.93 5.71 -58.49 -0.33 -9.27 16 12 C 0.11 1.54 4.90 -4.04 -0.02 1.52 16 13 C -0.11 -1.97 5.27 -26.73 -0.14 -2.11 16 14 C -0.01 -0.21 4.04 -27.89 -0.11 -0.33 16 15 C -0.52 -14.31 9.66 -34.44 -0.33 -14.64 16 16 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 19 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 23 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 25 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 26 H 0.13 1.00 6.28 -52.49 -0.33 0.67 16 27 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.14 1.33 6.70 -52.49 -0.35 0.98 16 29 H 0.41 4.98 7.81 -40.82 -0.32 4.66 16 30 H 0.06 0.81 7.93 -51.93 -0.41 0.40 16 31 H 0.06 0.82 7.95 -51.93 -0.41 0.41 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 35 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 313.04 15.07 4.72 4.72 Total: -1.00 -30.95 313.04 -6.17 -37.12 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.66 Total: -0.45 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.58 Total: -13.28 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 1.22 Total: -40.89 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.19 Total: -3.45 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.95 -6.17 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130026212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.642 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds