Wall clock time and date at job start Mon Mar 30 2020 06:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.36012 * 116.99758 * 2 1 4 4 C 1.38069 * 120.01006 * 359.97438 * 3 2 1 5 5 C 1.39820 * 119.86841 * 180.02562 * 4 3 2 6 6 C 1.43194 * 120.06196 * 180.02562 * 5 4 3 7 7 N 5.84064 * 81.25776 * 359.97438 * 2 1 3 8 8 C 1.39774 * 119.87627 * 359.97438 * 5 4 3 9 9 C 1.37757 * 120.01331 * 359.74569 * 8 5 4 10 10 C 1.39007 * 120.13086 * 0.50979 * 9 8 5 11 11 N 1.39445 * 119.93554 * 179.76607 * 10 9 8 12 12 C 1.46504 * 119.99768 * 359.71941 * 11 10 9 13 13 C 1.53006 * 109.46883 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47242 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99967 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00542 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00563 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99513 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46964 * 90.00276 * 19 17 15 21 21 H 1.48502 * 109.47035 * 210.00108 * 19 17 15 22 22 H 1.48499 * 109.47257 * 330.00183 * 19 17 15 23 23 H 1.08998 * 109.46981 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46463 * 299.99531 * 1 2 3 25 25 H 1.08996 * 109.46881 * 59.99696 * 1 2 3 26 26 H 1.07997 * 120.06362 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.99135 * 179.97438 * 8 5 4 28 28 H 1.07994 * 119.93143 * 180.25018 * 9 8 5 29 29 H 0.96992 * 120.00265 * 179.72327 * 11 10 9 30 30 H 1.09001 * 109.46891 * 60.00400 * 12 11 10 31 31 H 1.08993 * 109.47378 * 299.99772 * 12 11 10 32 32 H 1.09001 * 109.46801 * 300.00349 * 13 12 11 33 33 H 1.09001 * 109.46998 * 59.99945 * 13 12 11 34 34 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 35 35 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 36 36 H 0.96999 * 120.00061 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2947 2.3699 -0.0005 5 6 1.9325 3.6142 -0.0011 6 6 1.1568 4.8179 -0.0011 7 7 0.5414 5.7728 -0.0026 8 6 3.3286 3.6810 -0.0005 9 6 4.0739 2.5224 0.0058 10 6 3.4403 1.2851 0.0010 11 7 4.1987 0.1149 0.0026 12 6 5.6618 0.1903 0.0030 13 6 6.2453 -1.2241 0.0054 14 6 7.7732 -1.1455 0.0065 15 6 8.3479 -2.5385 0.0082 16 1 7.6893 -3.3944 0.0081 17 6 9.7146 -2.7205 0.0100 18 7 10.2162 -3.9363 0.0110 19 14 10.8539 -1.2401 0.0110 20 1 11.1541 -0.8475 1.4113 21 1 12.1176 -1.5875 -0.6874 22 1 10.1958 -0.1085 -0.6901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.2161 2.3148 -0.0005 27 1 3.8232 4.6411 -0.0014 28 1 5.1525 2.5755 0.0103 29 1 3.7576 -0.7489 0.0033 30 1 5.9978 0.7231 0.8926 31 1 5.9985 0.7211 -0.8873 32 1 5.9084 -1.7546 0.8961 33 1 5.9092 -1.7573 -0.8839 34 1 8.1103 -0.6148 -0.8838 35 1 8.1089 -0.6125 0.8961 36 1 11.1777 -4.0642 0.0119 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130026212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:43 Heat of formation + Delta-G solvation = -12.715737 kcal Electronic energy + Delta-G solvation = -17961.526501 eV Core-core repulsion = 15023.924523 eV Total energy + Delta-G solvation = -2937.601978 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26965 -38.72073 -38.02656 -36.78785 -35.35069 -33.58742 -31.26641 -30.81755 -28.29818 -28.15228 -24.95961 -23.79107 -22.75034 -21.80896 -20.24212 -18.91558 -18.20545 -17.66940 -17.03471 -16.68866 -16.28577 -16.18906 -15.41893 -15.16813 -14.88625 -14.87856 -14.73111 -14.43339 -14.21168 -13.69860 -13.57858 -13.28088 -13.21117 -12.73373 -12.67066 -12.32692 -12.13015 -11.90947 -11.78494 -11.62018 -11.58116 -11.27898 -10.90033 -10.72717 -9.56704 -8.25935 -8.15408 -6.30680 -0.00128 0.47768 1.41515 1.43427 1.55032 1.70222 2.03932 2.33197 2.40463 2.55002 2.98720 3.02561 3.10252 3.84665 4.11395 4.18835 4.26693 4.29481 4.39700 4.48425 4.52484 4.60974 4.81620 4.83013 4.94654 4.98719 5.02794 5.08677 5.20448 5.44208 5.51673 5.62643 5.67524 5.70949 6.11997 6.31420 6.52993 6.56686 6.78300 6.80492 7.34303 8.90975 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.029562 B = 0.003555 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.947080 B = 7873.838524 C = 8789.734255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.037 3.963 4 C -0.107 4.107 5 C -0.081 4.081 6 C 0.290 3.710 7 N -0.482 5.482 8 C -0.035 4.035 9 C -0.183 4.183 10 C 0.224 3.776 11 N -0.729 5.729 12 C 0.128 3.872 13 C -0.104 4.104 14 C -0.009 4.009 15 C -0.534 4.534 16 H 0.029 0.971 17 C -0.001 4.001 18 N -0.956 5.956 19 Si 0.954 3.046 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.237 1.237 23 H 0.113 0.887 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.150 0.850 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.407 0.593 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.385 13.675 -0.044 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.250 6.250 3 C -0.011 4.011 4 C -0.129 4.129 5 C -0.088 4.088 6 C -0.023 4.023 7 N -0.159 5.159 8 C -0.056 4.056 9 C -0.206 4.206 10 C 0.115 3.885 11 N -0.355 5.355 12 C 0.004 3.996 13 C -0.142 4.142 14 C -0.047 4.047 15 C -0.572 4.572 16 H 0.047 0.953 17 C -0.197 4.197 18 N -0.597 5.597 19 Si 0.777 3.223 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.160 1.160 23 H 0.131 0.869 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.168 0.832 27 H 0.170 0.830 28 H 0.169 0.831 29 H 0.242 0.758 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.888 14.856 -0.049 23.253 hybrid contribution 0.545 -0.835 0.024 0.998 sum -17.343 14.020 -0.025 22.301 Atomic orbital electron populations 1.23279 0.76629 1.05303 1.02110 1.86010 1.23130 1.25915 1.89964 1.18247 0.90185 0.85295 1.07414 1.20983 1.00560 0.89612 1.01786 1.15498 0.91808 0.86073 1.15408 1.25812 0.92292 0.92499 0.91694 1.81262 1.10223 1.12059 1.12358 1.21011 0.90823 0.99295 0.94467 1.20628 1.01168 0.89131 1.09686 1.17768 0.87655 0.88395 0.94651 1.44819 1.05504 1.06077 1.79110 1.21486 0.78560 0.97490 1.02067 1.21461 0.95994 0.95519 1.01272 1.19449 0.93231 0.94786 0.97224 1.21534 0.92147 0.93277 1.50256 0.95288 1.26099 1.00411 0.99067 0.94135 1.70085 1.13055 1.23656 1.52856 0.85608 0.77562 0.79938 0.79233 1.19179 1.21566 1.16033 0.86880 0.91772 0.91780 0.83206 0.83035 0.83125 0.75782 0.90953 0.91012 0.92846 0.92854 0.95452 0.95577 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -6.40 9.72 -93.68 -0.91 -7.31 16 3 C 0.04 0.72 6.70 22.55 0.15 0.87 16 4 C -0.11 -1.78 8.74 22.61 0.20 -1.58 16 5 C -0.08 -1.42 5.74 -21.28 -0.12 -1.54 16 6 C 0.29 5.99 15.32 88.33 1.35 7.34 16 7 N -0.48 -12.23 18.54 19.00 0.35 -11.88 16 8 C -0.03 -0.54 9.74 22.53 0.22 -0.32 16 9 C -0.18 -3.23 9.28 22.34 0.21 -3.03 16 10 C 0.22 4.68 6.67 38.44 0.26 4.94 16 11 N -0.73 -16.85 5.71 -338.96 -1.94 -18.78 16 12 C 0.13 3.19 4.90 86.38 0.42 3.61 16 13 C -0.10 -3.54 5.27 30.60 0.16 -3.38 16 14 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 15 C -0.53 -29.71 9.66 25.60 0.25 -29.46 16 16 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 17 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 18 N -0.96 -59.31 13.96 21.45 0.30 -59.01 16 19 Si 0.95 42.35 27.47 68.60 1.88 44.24 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 23 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.58 7.66 -2.39 -0.02 0.57 16 25 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 26 H 0.15 1.88 6.28 -2.91 -0.02 1.86 16 27 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 28 H 0.15 2.34 6.70 -2.91 -0.02 2.32 16 29 H 0.41 9.60 7.81 -92.71 -0.72 8.87 16 30 H 0.07 1.67 7.93 -2.39 -0.02 1.66 16 31 H 0.07 1.67 7.95 -2.39 -0.02 1.65 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 35 H 0.03 1.05 7.57 -2.39 -0.02 1.03 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -67.87 313.04 4.80 -63.08 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.32 Total: 10.71 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 4.79 Total: -21.04 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -1.28 Total: -89.67 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.91 Total: -7.31 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.24 kcal Total: -67.87 4.80 -63.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130026212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.360 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds