Wall clock time and date at job start Mon Mar 30 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35764 * 117.00132 * 2 1 4 4 C 1.39174 * 119.84602 * 359.72865 * 3 2 1 5 5 C 1.37591 * 120.28656 * 179.76120 * 4 3 2 6 6 C 1.39850 * 119.97134 * 0.51118 * 5 4 3 7 7 C 1.43196 * 120.14909 * 179.72149 * 6 5 4 8 8 N 6.70209 * 116.80046 * 359.97438 * 2 1 3 9 9 C 1.40492 * 119.70015 * 359.74054 * 6 5 4 10 10 N 1.39026 * 120.14389 * 179.97438 * 9 6 5 11 11 C 1.46902 * 111.00166 * 116.07089 * 10 9 6 12 12 C 1.46902 * 111.00172 * 240.02563 * 10 9 6 13 13 H 1.09003 * 109.47154 * 299.99502 * 12 10 9 14 14 C 1.52995 * 109.47033 * 60.00006 * 12 10 9 15 15 C 1.50704 * 109.47036 * 180.02562 * 12 10 9 16 16 H 1.07996 * 120.00337 * 359.97438 * 15 12 10 17 17 C 1.37878 * 119.99815 * 180.02562 * 15 12 10 18 18 N 1.31508 * 120.00085 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99951 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46957 * 89.99191 * 19 17 15 21 21 H 1.48495 * 109.47024 * 209.99676 * 19 17 15 22 22 H 1.48499 * 109.46784 * 329.99298 * 19 17 15 23 23 C 1.38606 * 119.84675 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47054 * 59.99695 * 1 2 3 25 25 H 1.08995 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46946 * 300.00211 * 1 2 3 27 27 H 1.07997 * 119.85565 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.01072 * 180.22849 * 5 4 3 29 29 H 1.09000 * 109.46992 * 59.99747 * 11 10 9 30 30 H 1.09002 * 109.47001 * 180.02562 * 11 10 9 31 31 H 1.08998 * 109.46964 * 300.00177 * 11 10 9 32 32 H 1.09001 * 109.47318 * 60.00226 * 14 12 10 33 33 H 1.09004 * 109.46823 * 180.02562 * 14 12 10 34 34 H 1.08995 * 109.47498 * 299.99845 * 14 12 10 35 35 H 0.97004 * 120.00240 * 180.02562 * 18 17 15 36 36 H 1.08002 * 119.99026 * 359.95472 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2842 2.3748 -0.0057 5 6 1.8994 3.6055 -0.0008 6 6 3.2954 3.6888 -0.0009 7 6 3.9397 4.9676 -0.0018 8 7 4.4508 5.9822 -0.0027 9 6 4.0629 2.5120 -0.0004 10 7 5.4513 2.5840 -0.0009 11 6 6.0088 2.0101 1.2311 12 6 6.0121 1.9262 -1.1887 13 1 5.7167 0.8770 -1.1966 14 6 5.4847 2.6142 -2.4494 15 6 7.5156 2.0238 -1.1542 16 1 8.0055 2.5247 -0.3323 17 6 8.2657 1.4745 -2.1723 18 7 7.6691 0.8650 -3.1734 19 14 10.1293 1.5960 -2.1299 20 1 10.6861 0.4173 -1.4187 21 1 10.6548 1.6303 -3.5183 22 1 10.5282 2.8372 -1.4189 23 6 3.4297 1.2785 0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2060 2.3127 -0.0097 28 1 1.3045 4.5068 -0.0016 29 1 5.7131 0.9641 1.3109 30 1 7.0963 2.0798 1.2047 31 1 5.6306 2.5613 2.0921 32 1 5.7803 3.6633 -2.4415 33 1 5.9005 2.1258 -3.3308 34 1 4.3974 2.5432 -2.4742 35 1 8.1968 0.4781 -3.8895 36 1 4.0153 0.3710 0.0017 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130392397.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:23 Heat of formation + Delta-G solvation = 32.135911 kcal Electronic energy + Delta-G solvation = -19374.296488 eV Core-core repulsion = 16438.639424 eV Total energy + Delta-G solvation = -2935.657064 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31564 -38.51197 -36.27459 -35.38749 -32.92240 -30.70423 -29.82743 -29.08944 -27.41032 -25.45048 -24.32514 -23.21287 -22.00637 -19.78572 -18.49541 -17.63869 -16.59104 -16.01576 -15.79083 -15.23888 -14.63267 -14.24006 -13.98004 -13.89828 -13.42028 -13.16166 -12.89193 -12.55394 -12.32527 -12.17848 -11.95209 -11.90659 -11.72355 -11.13068 -11.05677 -10.81751 -10.75487 -10.69264 -10.23635 -10.16271 -10.06576 -9.03406 -8.60957 -8.48223 -8.04161 -7.56889 -6.06621 -4.11804 1.11976 1.44078 3.22348 3.28871 3.30940 3.32743 3.35973 3.40656 4.19734 4.34376 4.44910 4.61267 4.79531 5.03646 5.05653 5.07181 5.25682 5.35075 5.55233 5.63121 5.85981 6.07286 6.12926 6.19075 6.32184 6.44585 6.66970 6.71721 6.80226 7.00767 7.06022 7.36055 7.37518 7.68189 7.76441 7.98864 8.11305 8.22328 8.49994 8.92267 9.53222 11.00165 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021591 B = 0.006354 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.547686 B = 4405.338882 C = 5132.241838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.162 3.838 4 C -0.228 4.228 5 C -0.029 4.029 6 C -0.063 4.063 7 C 0.283 3.717 8 N -0.436 5.436 9 C 0.214 3.786 10 N -0.517 5.517 11 C 0.041 3.959 12 C 0.218 3.782 13 H 0.011 0.989 14 C -0.134 4.134 15 C -0.509 4.509 16 H 0.066 0.934 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.187 4.187 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.024 0.976 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.089 0.911 34 H 0.008 0.992 35 H 0.262 0.738 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.861 -1.764 6.427 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.115 3.885 4 C -0.247 4.247 5 C -0.050 4.050 6 C -0.068 4.068 7 C -0.032 4.032 8 N -0.112 5.112 9 C 0.116 3.884 10 N -0.240 5.240 11 C -0.105 4.105 12 C 0.115 3.885 13 H 0.029 0.971 14 C -0.192 4.192 15 C -0.547 4.547 16 H 0.084 0.916 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.208 4.208 24 H 0.075 0.925 25 H 0.116 0.884 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.043 0.957 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.760 0.000 6.224 15.103 hybrid contribution 0.354 -1.152 -0.168 1.217 sum -13.406 -1.151 6.056 14.755 Atomic orbital electron populations 1.23070 0.78526 1.03869 1.01418 1.86091 1.21316 1.27170 1.88101 1.19119 0.91987 0.84025 0.93393 1.20977 0.99914 0.91691 1.12109 1.20762 0.91965 0.97599 0.94694 1.16024 0.91798 0.86468 1.12502 1.25182 0.92743 0.92073 0.93176 1.81108 1.07766 1.12725 1.09641 1.18774 0.91140 0.89530 0.88970 1.59882 0.99508 1.58980 1.05586 1.22290 1.02259 0.96208 0.89743 1.19429 0.94454 0.91261 0.83346 0.97105 1.21826 0.95735 0.99968 1.01696 1.21097 0.89875 1.36093 1.07632 0.91634 1.24905 0.98818 0.95063 0.95207 1.69884 1.35327 1.37125 1.10588 0.86490 0.85156 0.78478 0.77293 1.20678 1.21203 1.19793 1.21081 0.91648 0.99608 1.08457 0.92477 0.88381 0.92575 0.84960 0.84943 0.95732 0.89376 0.93337 0.94742 0.89237 0.97264 0.92828 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.80 101.05 0.99 1.20 16 2 O -0.31 -4.09 10.48 -19.00 -0.20 -4.29 16 3 C 0.16 2.30 6.69 -39.10 -0.26 2.04 16 4 C -0.23 -2.69 9.01 -39.47 -0.36 -3.05 16 5 C -0.03 -0.37 9.75 -39.21 -0.38 -0.75 16 6 C -0.06 -1.05 5.76 -106.52 -0.61 -1.67 16 7 C 0.28 5.31 14.81 -22.47 -0.33 4.98 16 8 N -0.44 -8.93 18.54 41.84 0.78 -8.16 16 9 C 0.21 3.95 3.30 -83.59 -0.28 3.67 16 10 N -0.52 -11.02 3.98 -172.45 -0.69 -11.70 16 11 C 0.04 0.78 9.10 60.07 0.55 1.33 16 12 C 0.22 5.38 1.83 -68.86 -0.13 5.25 16 13 H 0.01 0.30 7.11 -51.93 -0.37 -0.07 16 14 C -0.13 -3.32 8.84 37.15 0.33 -2.99 16 15 C -0.51 -13.65 7.88 -34.44 -0.27 -13.92 16 16 H 0.07 1.76 6.40 -52.49 -0.34 1.42 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.96 11.32 55.43 0.63 -24.34 16 19 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.19 -3.17 8.48 -39.29 -0.33 -3.51 16 24 H 0.06 0.40 7.64 -51.93 -0.40 0.00 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.13 1.12 6.26 -52.49 -0.33 0.79 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.02 0.44 7.33 -51.93 -0.38 0.06 16 30 H 0.09 1.77 6.10 -51.93 -0.32 1.46 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 34 H 0.01 0.19 7.22 -51.93 -0.38 -0.18 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.14 2.48 7.00 -52.49 -0.37 2.12 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -30.37 305.31 -5.49 -35.86 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.41 Total: -2.31 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.18 Total: -5.83 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.72 Total: -44.20 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.20 Total: -4.29 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.37 -5.49 -35.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130392397.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.994 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds