Wall clock time and date at job start Mon Mar 30 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35764 * 117.00132 * 2 1 4 4 C 1.39174 * 119.84602 * 359.72865 * 3 2 1 5 5 C 1.37591 * 120.28656 * 179.76120 * 4 3 2 6 6 C 1.39850 * 119.97134 * 0.51118 * 5 4 3 7 7 C 1.43196 * 120.14909 * 179.72149 * 6 5 4 8 8 N 6.70209 * 116.80046 * 359.97438 * 2 1 3 9 9 C 1.40492 * 119.70015 * 359.74054 * 6 5 4 10 10 N 1.39026 * 120.14389 * 179.97438 * 9 6 5 11 11 C 1.46902 * 111.00166 * 116.07089 * 10 9 6 12 12 C 1.46902 * 111.00172 * 240.02563 * 10 9 6 13 13 H 1.09003 * 109.47154 * 299.99502 * 12 10 9 14 14 C 1.52995 * 109.47033 * 60.00006 * 12 10 9 15 15 C 1.50704 * 109.47036 * 180.02562 * 12 10 9 16 16 H 1.07996 * 120.00337 * 359.97438 * 15 12 10 17 17 C 1.37878 * 119.99815 * 180.02562 * 15 12 10 18 18 N 1.31508 * 120.00085 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99951 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46957 * 89.99191 * 19 17 15 21 21 H 1.48495 * 109.47024 * 209.99676 * 19 17 15 22 22 H 1.48499 * 109.46784 * 329.99298 * 19 17 15 23 23 C 1.38606 * 119.84675 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47054 * 59.99695 * 1 2 3 25 25 H 1.08995 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46946 * 300.00211 * 1 2 3 27 27 H 1.07997 * 119.85565 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.01072 * 180.22849 * 5 4 3 29 29 H 1.09000 * 109.46992 * 59.99747 * 11 10 9 30 30 H 1.09002 * 109.47001 * 180.02562 * 11 10 9 31 31 H 1.08998 * 109.46964 * 300.00177 * 11 10 9 32 32 H 1.09001 * 109.47318 * 60.00226 * 14 12 10 33 33 H 1.09004 * 109.46823 * 180.02562 * 14 12 10 34 34 H 1.08995 * 109.47498 * 299.99845 * 14 12 10 35 35 H 0.97004 * 120.00240 * 180.02562 * 18 17 15 36 36 H 1.08002 * 119.99026 * 359.95472 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2842 2.3748 -0.0057 5 6 1.8994 3.6055 -0.0008 6 6 3.2954 3.6888 -0.0009 7 6 3.9397 4.9676 -0.0018 8 7 4.4508 5.9822 -0.0027 9 6 4.0629 2.5120 -0.0004 10 7 5.4513 2.5840 -0.0009 11 6 6.0088 2.0101 1.2311 12 6 6.0121 1.9262 -1.1887 13 1 5.7167 0.8770 -1.1966 14 6 5.4847 2.6142 -2.4494 15 6 7.5156 2.0238 -1.1542 16 1 8.0055 2.5247 -0.3323 17 6 8.2657 1.4745 -2.1723 18 7 7.6691 0.8650 -3.1734 19 14 10.1293 1.5960 -2.1299 20 1 10.6861 0.4173 -1.4187 21 1 10.6548 1.6303 -3.5183 22 1 10.5282 2.8372 -1.4189 23 6 3.4297 1.2785 0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2060 2.3127 -0.0097 28 1 1.3045 4.5068 -0.0016 29 1 5.7131 0.9641 1.3109 30 1 7.0963 2.0798 1.2047 31 1 5.6306 2.5613 2.0921 32 1 5.7803 3.6633 -2.4415 33 1 5.9005 2.1258 -3.3308 34 1 4.3974 2.5432 -2.4742 35 1 8.1968 0.4781 -3.8895 36 1 4.0153 0.3710 0.0017 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130392397.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:23 Heat of formation + Delta-G solvation = 13.279294 kcal Electronic energy + Delta-G solvation = -19375.114173 eV Core-core repulsion = 16438.639424 eV Total energy + Delta-G solvation = -2936.474749 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.49664 -39.73963 -37.76665 -36.76507 -34.84635 -31.87089 -31.45124 -30.65500 -28.25176 -27.29401 -25.98446 -24.36606 -23.55229 -21.35027 -19.75484 -18.78067 -18.33105 -17.34485 -17.09970 -16.59568 -16.06992 -15.77151 -15.34993 -15.28759 -14.68477 -14.61986 -14.44155 -14.09164 -13.76157 -13.53558 -13.20337 -13.15575 -13.01595 -12.97952 -12.68873 -12.65036 -12.20647 -12.10131 -12.07497 -11.82239 -11.70057 -11.02521 -10.56468 -9.81556 -9.25981 -9.18302 -8.14635 -6.26149 -0.09636 0.29483 1.40374 1.42347 1.52452 1.86806 2.04621 2.33022 2.40694 2.90698 3.06589 3.15607 3.21526 3.81555 4.10267 4.25319 4.42553 4.48312 4.52836 4.53056 4.65305 4.74919 4.78762 4.86010 4.95939 5.00418 5.05846 5.15996 5.23612 5.30941 5.44287 5.57685 5.68233 5.79837 6.15783 6.21495 6.41935 6.66415 6.79482 6.84461 7.42325 8.91572 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021591 B = 0.006354 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.547686 B = 4405.338882 C = 5132.241838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.334 6.334 3 C 0.171 3.829 4 C -0.207 4.207 5 C -0.008 4.008 6 C -0.084 4.084 7 C 0.297 3.703 8 N -0.479 5.479 9 C 0.188 3.812 10 N -0.528 5.528 11 C 0.045 3.955 12 C 0.228 3.772 13 H -0.015 1.015 14 C -0.117 4.117 15 C -0.524 4.524 16 H 0.059 0.941 17 C 0.016 3.984 18 N -0.916 5.916 19 Si 0.959 3.041 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.207 4.207 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.078 0.922 27 H 0.180 0.820 28 H 0.172 0.828 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.018 0.982 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.455 -1.717 7.079 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.247 6.247 3 C 0.123 3.877 4 C -0.225 4.225 5 C -0.029 4.029 6 C -0.089 4.089 7 C -0.017 4.017 8 N -0.156 5.156 9 C 0.090 3.910 10 N -0.250 5.250 11 C -0.101 4.101 12 C 0.123 3.877 13 H 0.003 0.997 14 C -0.175 4.175 15 C -0.562 4.562 16 H 0.077 0.923 17 C -0.183 4.183 18 N -0.556 5.556 19 Si 0.784 3.216 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.199 1.199 23 C -0.228 4.228 24 H 0.091 0.909 25 H 0.134 0.866 26 H 0.096 0.904 27 H 0.197 0.803 28 H 0.189 0.811 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.379 0.040 6.894 17.771 hybrid contribution 0.955 -1.275 -0.329 1.627 sum -15.424 -1.236 6.565 16.809 Atomic orbital electron populations 1.23497 0.75554 1.05887 1.03201 1.86083 1.24354 1.26719 1.87531 1.19153 0.91130 0.85539 0.91882 1.21427 1.01939 0.89980 1.09181 1.21184 0.90191 0.99601 0.91897 1.16178 0.93417 0.84636 1.14627 1.25582 0.91949 0.92178 0.91964 1.81108 1.08814 1.14151 1.11506 1.18746 0.89666 0.90839 0.91711 1.59708 1.01809 1.58597 1.04882 1.22255 1.01135 0.96815 0.89940 1.19102 0.93559 0.90049 0.84980 0.99720 1.21590 0.96607 0.98408 1.00897 1.21385 0.91430 1.35914 1.07496 0.92271 1.25648 1.02951 0.94799 0.94922 1.69998 1.36731 1.37778 1.11071 0.85543 0.80225 0.78511 0.77284 1.19725 1.20871 1.19855 1.20859 0.93293 0.98104 1.10528 0.90893 0.86608 0.90352 0.80319 0.81106 0.95419 0.91171 0.91061 0.96260 0.91606 0.95550 0.92768 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.80 113.37 1.11 1.25 16 2 O -0.33 -7.80 10.48 -90.91 -0.95 -8.75 16 3 C 0.17 4.42 6.69 22.58 0.15 4.57 16 4 C -0.21 -3.90 9.01 22.34 0.20 -3.70 16 5 C -0.01 -0.18 9.75 22.51 0.22 0.04 16 6 C -0.08 -2.66 5.76 -21.09 -0.12 -2.79 16 7 C 0.30 10.96 14.81 88.33 1.31 12.26 16 8 N -0.48 -19.62 18.54 19.00 0.35 -19.26 16 9 C 0.19 6.93 3.30 38.65 0.13 7.05 16 10 N -0.53 -23.09 3.98 -699.51 -2.78 -25.87 16 11 C 0.04 1.75 9.10 127.69 1.16 2.91 16 12 C 0.23 11.66 1.83 44.17 0.08 11.74 16 13 H -0.01 -0.81 7.11 -2.39 -0.02 -0.83 16 14 C -0.12 -5.96 8.84 71.98 0.64 -5.33 16 15 C -0.52 -29.06 7.88 25.60 0.20 -28.86 16 16 H 0.06 3.28 6.40 -2.91 -0.02 3.27 16 17 C 0.02 0.89 5.30 84.66 0.45 1.34 16 18 N -0.92 -52.70 11.32 21.45 0.24 -52.46 16 19 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 C -0.21 -7.00 8.48 22.46 0.19 -6.81 16 24 H 0.07 0.64 7.64 -2.39 -0.02 0.62 16 25 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.08 0.59 7.66 -2.39 -0.02 0.57 16 27 H 0.18 1.76 6.26 -2.91 -0.02 1.74 16 28 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 29 H 0.03 1.03 7.33 -2.39 -0.02 1.02 16 30 H 0.07 2.94 6.10 -2.39 -0.01 2.93 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 3.66 6.07 -2.38 -0.01 3.64 16 34 H 0.03 1.20 7.22 -2.39 -0.02 1.18 16 35 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.12 4.36 7.00 -2.91 -0.02 4.34 16 Total: -1.00 -68.72 305.31 5.70 -63.02 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 1.09 Total: 3.39 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.72 Total: -6.31 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -2.19 Total: -97.59 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.95 Total: -8.75 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.72 5.70 -63.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130392397.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.296 kcal (2) G-P(sol) polarization free energy of solvation -68.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds