Wall clock time and date at job start Mon Mar 30 2020 06:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99848 * 2 1 4 4 H 1.48494 * 109.47230 * 270.00235 * 3 2 1 5 5 H 1.48505 * 109.47083 * 30.00346 * 3 2 1 6 6 H 1.48506 * 109.47104 * 150.00187 * 3 2 1 7 7 C 1.37871 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00451 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47571 * 184.77100 * 9 7 2 11 11 C 1.50700 * 109.41303 * 302.18884 * 10 9 7 12 12 C 1.38393 * 120.00075 * 313.96068 * 11 10 9 13 13 N 1.32131 * 119.99764 * 180.02562 * 12 11 10 14 14 C 1.32153 * 119.99798 * 0.02562 * 13 12 11 15 15 C 1.38344 * 120.00241 * 0.25295 * 14 13 12 16 16 N 1.32128 * 120.00184 * 133.98326 * 11 10 9 17 17 C 1.52958 * 109.41431 * 62.04803 * 10 9 7 18 18 C 1.53244 * 109.39726 * 56.36647 * 17 10 9 19 19 C 1.51270 * 108.48426 * 54.73761 * 18 17 10 20 20 O 1.20754 * 120.85463 * 128.63215 * 19 18 17 21 21 C 1.51273 * 118.29555 * 308.60969 * 19 18 17 22 22 C 1.52966 * 109.41383 * 182.33320 * 10 9 7 23 23 H 0.96999 * 120.00189 * 359.97438 * 1 2 3 24 24 H 1.09011 * 109.47109 * 64.77287 * 9 7 2 25 25 H 1.09001 * 109.47193 * 304.77756 * 9 7 2 26 26 H 1.07995 * 120.00152 * 0.02562 * 12 11 10 27 27 H 1.07995 * 120.00155 * 179.97438 * 14 13 12 28 28 H 1.08002 * 119.99689 * 179.72093 * 15 14 13 29 29 H 1.08995 * 109.48794 * 176.41657 * 17 10 9 30 30 H 1.09002 * 109.48228 * 296.45807 * 17 10 9 31 31 H 1.09001 * 109.68415 * 295.01716 * 18 17 10 32 32 H 1.08999 * 109.77239 * 174.50842 * 18 17 10 33 33 H 1.09002 * 109.62622 * 291.62987 * 21 19 18 34 34 H 1.09006 * 109.62429 * 171.06165 * 21 19 18 35 35 H 1.08990 * 109.48255 * 63.53837 * 22 10 9 36 36 H 1.09001 * 109.48234 * 183.57321 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2411 -3.6596 0.1188 11 6 3.2261 -3.5968 -1.0200 12 6 2.7780 -3.3805 -2.3114 13 7 3.6416 -3.3260 -3.3099 14 6 4.9332 -3.4784 -3.0754 15 6 5.3806 -3.7003 -1.7852 16 7 4.5175 -3.7486 -0.7856 17 6 2.9920 -3.5527 1.4470 18 6 1.9838 -3.5217 2.6007 19 6 1.0888 -4.7360 2.4882 20 8 0.9161 -5.4677 3.4331 21 6 0.4152 -5.0099 1.1617 22 6 1.4800 -4.9852 0.0602 23 1 -0.4850 0.8400 0.0004 24 1 0.6897 -2.5946 -0.9301 25 1 0.5621 -2.5210 0.8438 26 1 1.7225 -3.2564 -2.5030 27 1 5.6391 -3.4343 -3.8915 28 1 6.4357 -3.8294 -1.5943 29 1 3.6514 -4.4129 1.5622 30 1 3.5834 -2.6371 1.4577 31 1 1.3812 -2.6156 2.5374 32 1 2.5128 -3.5438 3.5534 33 1 -0.3327 -4.2415 0.9653 34 1 -0.0612 -5.9900 1.1884 35 1 0.9991 -5.0855 -0.9127 36 1 2.1760 -5.8108 0.2086 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145389922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:08 Heat of formation + Delta-G solvation = -7.396776 kcal Electronic energy + Delta-G solvation = -20004.070138 eV Core-core repulsion = 17066.698807 eV Total energy + Delta-G solvation = -2937.371330 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.91579 -39.45100 -37.09001 -33.70340 -32.83801 -31.58940 -30.83792 -28.84137 -26.81522 -24.42010 -23.50575 -22.96797 -22.52730 -20.04985 -17.72892 -16.91789 -16.80378 -16.50601 -15.64622 -15.03558 -14.89877 -14.58152 -14.28706 -14.18247 -13.73053 -13.48238 -12.87712 -12.46100 -12.16710 -12.03498 -11.80206 -11.23540 -11.18120 -11.02548 -10.86987 -10.79332 -10.63955 -10.51578 -10.37835 -10.22354 -9.42862 -9.28191 -8.88553 -8.60733 -8.56833 -8.42762 -6.14090 -4.15579 1.28131 1.63017 2.37333 3.24133 3.31796 3.34698 4.16880 4.35872 4.43694 4.58422 4.72902 4.94876 5.13175 5.17756 5.23395 5.26359 5.44022 5.54528 5.73183 5.76632 5.88208 5.90718 5.94605 6.04584 6.16319 6.24441 6.29529 6.49827 6.53006 6.82053 6.93435 6.93689 7.41275 7.48014 7.76475 7.83390 7.90314 8.22512 8.27654 8.88171 9.49603 10.96410 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.010993 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.527178 B = 2546.496211 C = 4023.518565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.031 3.969 10 C -0.013 4.013 11 C 0.136 3.864 12 C 0.072 3.928 13 N -0.443 5.443 14 C 0.021 3.979 15 C 0.042 3.958 16 N -0.443 5.443 17 C -0.074 4.074 18 C -0.170 4.170 19 C 0.369 3.631 20 O -0.480 6.480 21 C -0.168 4.168 22 C -0.098 4.098 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.040 0.960 26 H 0.169 0.831 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.385 -7.630 -2.269 9.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.072 0.928 9 C -0.006 4.006 10 C -0.015 4.015 11 C -0.005 4.005 12 C -0.088 4.088 13 N -0.158 5.158 14 C -0.138 4.138 15 C -0.117 4.117 16 N -0.158 5.158 17 C -0.112 4.112 18 C -0.208 4.208 19 C 0.247 3.753 20 O -0.355 6.355 21 C -0.205 4.205 22 C -0.136 4.136 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.186 0.814 27 H 0.176 0.824 28 H 0.176 0.824 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.178 -7.893 -1.793 9.609 hybrid contribution 0.602 1.286 -0.235 1.439 sum 5.780 -6.607 -2.028 9.010 Atomic orbital electron populations 1.69916 1.05857 1.26817 1.50320 1.24907 0.94734 0.98967 0.95137 0.86719 0.80045 0.83924 0.78169 1.20776 1.21123 1.19914 1.21086 0.92788 0.90499 1.51001 0.92799 1.19410 0.92961 0.90046 0.98217 1.19828 0.93720 0.96836 0.91092 1.22089 0.91337 0.91765 0.95263 1.23565 1.00988 0.95011 0.89258 1.68411 1.02911 1.09119 1.35313 1.23531 0.93500 0.99163 0.97569 1.23602 1.00449 0.97606 0.90081 1.68277 1.02742 1.10312 1.34425 1.21209 0.96036 1.02888 0.91018 1.22378 0.99160 0.98853 1.00387 1.25031 0.77747 0.84334 0.88204 1.90335 1.56427 1.47489 1.41285 1.22312 0.99860 1.03999 0.94371 1.21567 0.96768 0.96935 0.98336 0.92842 0.96154 0.94216 0.81415 0.82444 0.82367 0.92670 0.89769 0.86517 0.90382 0.87101 0.90066 0.90909 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.17 13.29 55.43 0.74 -23.44 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.88 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -12.68 7.68 -34.44 -0.26 -12.95 16 8 H 0.05 1.37 6.53 -52.49 -0.34 1.03 16 9 C 0.03 0.65 2.77 -27.88 -0.08 0.57 16 10 C -0.01 -0.23 0.38 -155.70 -0.06 -0.29 16 11 C 0.14 2.46 4.44 -82.41 -0.37 2.09 16 12 C 0.07 1.31 10.03 -17.37 -0.17 1.13 16 13 N -0.44 -7.67 10.50 -13.06 -0.14 -7.81 16 14 C 0.02 0.30 11.22 -17.37 -0.20 0.11 16 15 C 0.04 0.60 11.22 -17.37 -0.20 0.41 16 16 N -0.44 -7.67 9.28 -9.28 -0.09 -7.75 16 17 C -0.07 -1.29 3.75 -26.63 -0.10 -1.39 16 18 C -0.17 -2.89 5.64 -27.48 -0.16 -3.04 16 19 C 0.37 6.27 6.71 -28.47 -0.19 6.07 16 20 O -0.48 -9.26 17.89 6.00 0.11 -9.15 16 21 C -0.17 -2.50 5.64 -27.48 -0.16 -2.66 16 22 C -0.10 -1.47 4.73 -26.63 -0.13 -1.60 16 23 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 24 H 0.02 0.45 6.85 -51.92 -0.36 0.10 16 25 H 0.04 0.88 4.91 -51.93 -0.25 0.62 16 26 H 0.17 2.95 6.83 -52.49 -0.36 2.59 16 27 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.05 0.92 8.01 -51.93 -0.42 0.51 16 30 H 0.08 1.64 6.96 -51.93 -0.36 1.27 16 31 H 0.12 2.15 6.62 -51.93 -0.34 1.81 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.11 1.68 6.72 -51.93 -0.35 1.34 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.00 7.99 -51.93 -0.41 0.59 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 291.75 15.07 4.40 4.40 Total: -1.00 -29.18 291.75 -6.60 -35.79 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.44 Total: 2.25 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.16 Total: -9.96 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.51 Total: -39.00 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.11 Total: -9.15 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.18 -6.60 -35.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145389922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.390 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds