Wall clock time and date at job start Mon Mar 30 2020 06:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99848 * 2 1 4 4 H 1.48494 * 109.47230 * 270.00235 * 3 2 1 5 5 H 1.48505 * 109.47083 * 30.00346 * 3 2 1 6 6 H 1.48506 * 109.47104 * 150.00187 * 3 2 1 7 7 C 1.37871 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00451 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47571 * 184.77100 * 9 7 2 11 11 C 1.50700 * 109.41303 * 302.18884 * 10 9 7 12 12 C 1.38393 * 120.00075 * 313.96068 * 11 10 9 13 13 N 1.32131 * 119.99764 * 180.02562 * 12 11 10 14 14 C 1.32153 * 119.99798 * 0.02562 * 13 12 11 15 15 C 1.38344 * 120.00241 * 0.25295 * 14 13 12 16 16 N 1.32128 * 120.00184 * 133.98326 * 11 10 9 17 17 C 1.52958 * 109.41431 * 62.04803 * 10 9 7 18 18 C 1.53244 * 109.39726 * 56.36647 * 17 10 9 19 19 C 1.51270 * 108.48426 * 54.73761 * 18 17 10 20 20 O 1.20754 * 120.85463 * 128.63215 * 19 18 17 21 21 C 1.51273 * 118.29555 * 308.60969 * 19 18 17 22 22 C 1.52966 * 109.41383 * 182.33320 * 10 9 7 23 23 H 0.96999 * 120.00189 * 359.97438 * 1 2 3 24 24 H 1.09011 * 109.47109 * 64.77287 * 9 7 2 25 25 H 1.09001 * 109.47193 * 304.77756 * 9 7 2 26 26 H 1.07995 * 120.00152 * 0.02562 * 12 11 10 27 27 H 1.07995 * 120.00155 * 179.97438 * 14 13 12 28 28 H 1.08002 * 119.99689 * 179.72093 * 15 14 13 29 29 H 1.08995 * 109.48794 * 176.41657 * 17 10 9 30 30 H 1.09002 * 109.48228 * 296.45807 * 17 10 9 31 31 H 1.09001 * 109.68415 * 295.01716 * 18 17 10 32 32 H 1.08999 * 109.77239 * 174.50842 * 18 17 10 33 33 H 1.09002 * 109.62622 * 291.62987 * 21 19 18 34 34 H 1.09006 * 109.62429 * 171.06165 * 21 19 18 35 35 H 1.08990 * 109.48255 * 63.53837 * 22 10 9 36 36 H 1.09001 * 109.48234 * 183.57321 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2411 -3.6596 0.1188 11 6 3.2261 -3.5968 -1.0200 12 6 2.7780 -3.3805 -2.3114 13 7 3.6416 -3.3260 -3.3099 14 6 4.9332 -3.4784 -3.0754 15 6 5.3806 -3.7003 -1.7852 16 7 4.5175 -3.7486 -0.7856 17 6 2.9920 -3.5527 1.4470 18 6 1.9838 -3.5217 2.6007 19 6 1.0888 -4.7360 2.4882 20 8 0.9161 -5.4677 3.4331 21 6 0.4152 -5.0099 1.1617 22 6 1.4800 -4.9852 0.0602 23 1 -0.4850 0.8400 0.0004 24 1 0.6897 -2.5946 -0.9301 25 1 0.5621 -2.5210 0.8438 26 1 1.7225 -3.2564 -2.5030 27 1 5.6391 -3.4343 -3.8915 28 1 6.4357 -3.8294 -1.5943 29 1 3.6514 -4.4129 1.5622 30 1 3.5834 -2.6371 1.4577 31 1 1.3812 -2.6156 2.5374 32 1 2.5128 -3.5438 3.5534 33 1 -0.3327 -4.2415 0.9653 34 1 -0.0612 -5.9900 1.1884 35 1 0.9991 -5.0855 -0.9127 36 1 2.1760 -5.8108 0.2086 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145389922.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:08 Heat of formation + Delta-G solvation = -24.861554 kcal Electronic energy + Delta-G solvation = -20004.827467 eV Core-core repulsion = 17066.698807 eV Total energy + Delta-G solvation = -2938.128660 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.20989 -40.81893 -38.52211 -35.00483 -34.70630 -32.92485 -32.16918 -30.36929 -28.39515 -25.80501 -24.76113 -24.68298 -23.84871 -21.43152 -19.18975 -18.44984 -18.19119 -17.88932 -17.03453 -16.66499 -16.29612 -16.06003 -15.76798 -15.47986 -15.08025 -14.90892 -14.24660 -13.98598 -13.80570 -13.34834 -13.24991 -13.01269 -12.73127 -12.46896 -12.41981 -12.28059 -12.06509 -12.02637 -11.92038 -11.70392 -11.09732 -10.96798 -10.49523 -10.28690 -9.86348 -9.79127 -8.14164 -6.17444 0.05745 0.36737 0.98937 1.35570 1.39834 1.46162 2.41956 2.92276 3.18420 3.22728 3.29712 3.53256 3.70687 3.85637 3.92886 3.99762 4.22677 4.32991 4.44668 4.47291 4.56521 4.59981 4.70909 4.76719 4.87357 4.94601 5.01239 5.15022 5.15292 5.41619 5.46883 5.59965 5.60724 5.79557 5.89659 6.32357 6.51850 6.53499 6.93735 7.03318 7.48818 8.96237 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.010993 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.527178 B = 2546.496211 C = 4023.518565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.930 3.070 4 H -0.284 1.284 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.507 4.507 8 H 0.044 0.956 9 C 0.040 3.960 10 C -0.008 4.008 11 C 0.118 3.882 12 C 0.051 3.949 13 N -0.463 5.463 14 C 0.027 3.973 15 C 0.046 3.954 16 N -0.460 5.460 17 C -0.065 4.065 18 C -0.168 4.168 19 C 0.374 3.626 20 O -0.502 6.502 21 C -0.162 4.162 22 C -0.092 4.092 23 H 0.260 0.740 24 H 0.007 0.993 25 H 0.030 0.970 26 H 0.160 0.840 27 H 0.200 0.800 28 H 0.201 0.799 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.066 -8.557 -2.877 11.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.181 4.181 3 Si 0.758 3.242 4 H -0.211 1.211 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.003 3.997 10 C -0.009 4.009 11 C -0.021 4.021 12 C -0.108 4.108 13 N -0.178 5.178 14 C -0.132 4.132 15 C -0.114 4.114 16 N -0.176 5.176 17 C -0.103 4.103 18 C -0.205 4.205 19 C 0.254 3.746 20 O -0.379 6.379 21 C -0.200 4.200 22 C -0.130 4.130 23 H 0.069 0.931 24 H 0.026 0.974 25 H 0.048 0.952 26 H 0.177 0.823 27 H 0.217 0.783 28 H 0.218 0.782 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.838 -8.815 -2.394 11.410 hybrid contribution 0.226 1.561 -0.110 1.581 sum 7.064 -7.254 -2.504 10.430 Atomic orbital electron populations 1.69998 1.06793 1.27126 1.52179 1.25498 0.95351 1.01496 0.95744 0.85978 0.79123 0.81359 0.77783 1.21053 1.20984 1.19699 1.21326 0.92408 0.91858 1.48924 0.93807 1.19229 0.93213 0.90312 0.96942 1.19661 0.93255 0.96695 0.91334 1.21983 0.91887 0.93185 0.95033 1.23471 1.01053 0.96526 0.89708 1.68413 1.04276 1.09748 1.35351 1.24258 0.92974 0.96964 0.99031 1.24330 1.01898 0.95609 0.89526 1.68276 1.02641 1.10870 1.35774 1.21094 0.95929 1.02161 0.91103 1.22322 0.99058 0.98305 1.00833 1.25184 0.77209 0.83606 0.88634 1.90331 1.57231 1.48151 1.42184 1.22292 0.99613 1.05091 0.92957 1.21535 0.96751 0.95670 0.99030 0.93072 0.97447 0.95226 0.82274 0.78318 0.78215 0.91523 0.91990 0.88306 0.89422 0.87496 0.87851 0.89596 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.82 13.29 21.44 0.28 -50.54 16 2 C 0.02 0.93 5.46 84.65 0.46 1.39 16 3 Si 0.93 42.71 29.54 68.60 2.03 44.73 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.51 -25.22 7.68 25.60 0.20 -25.02 16 8 H 0.04 2.24 6.53 -2.91 -0.02 2.22 16 9 C 0.04 1.73 2.77 29.85 0.08 1.81 16 10 C -0.01 -0.28 0.38 -52.95 -0.02 -0.30 16 11 C 0.12 4.16 4.44 42.55 0.19 4.35 16 12 C 0.05 1.83 10.03 84.68 0.85 2.68 16 13 N -0.46 -15.32 10.50 -195.22 -2.05 -17.37 16 14 C 0.03 0.70 11.22 84.67 0.95 1.65 16 15 C 0.05 1.18 11.22 84.67 0.95 2.13 16 16 N -0.46 -15.05 9.28 -183.29 -1.70 -16.75 16 17 C -0.07 -2.24 3.75 30.66 0.12 -2.13 16 18 C -0.17 -5.65 5.64 30.11 0.17 -5.48 16 19 C 0.37 12.37 6.71 29.46 0.20 12.56 16 20 O -0.50 -18.83 17.89 -1.43 -0.03 -18.86 16 21 C -0.16 -4.62 5.64 30.11 0.17 -4.45 16 22 C -0.09 -2.63 4.73 30.66 0.15 -2.48 16 23 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 24 H 0.01 0.33 6.85 -2.38 -0.02 0.32 16 25 H 0.03 1.33 4.91 -2.39 -0.01 1.32 16 26 H 0.16 5.72 6.83 -2.91 -0.02 5.70 16 27 H 0.20 3.29 8.06 -2.91 -0.02 3.26 16 28 H 0.20 3.29 8.06 -2.91 -0.02 3.26 16 29 H 0.07 2.14 8.01 -2.39 -0.02 2.12 16 30 H 0.06 2.40 6.96 -2.39 -0.02 2.39 16 31 H 0.10 3.72 6.62 -2.39 -0.02 3.71 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.11 3.19 6.72 -2.39 -0.02 3.18 16 34 H 0.10 2.52 8.14 -2.38 -0.02 2.51 16 35 H 0.09 2.25 7.99 -2.39 -0.02 2.23 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -62.34 291.75 4.09 -58.25 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 1.09 Total: 13.80 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 4.46 Total: -13.27 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -3.47 Total: -84.65 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.03 Total: -18.86 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -62.34 4.09 -58.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145389922.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.390 kcal (2) G-P(sol) polarization free energy of solvation -62.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds