Wall clock time and date at job start Mon Mar 30 2020 06:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36793 * 120.29118 * 2 1 4 4 C 1.40614 * 118.46751 * 180.24697 * 3 2 1 5 5 C 1.46782 * 120.50206 * 179.72585 * 4 3 2 6 6 O 1.21304 * 119.99772 * 180.02562 * 5 4 3 7 7 C 1.39924 * 118.99209 * 359.74216 * 4 3 2 8 8 N 1.31567 * 120.47675 * 359.97438 * 7 4 3 9 9 C 1.32686 * 121.66516 * 0.02562 * 8 7 4 10 10 N 1.38338 * 119.50717 * 179.97438 * 9 8 7 11 11 C 1.46898 * 111.00137 * 104.07558 * 10 9 8 12 12 C 1.50695 * 109.47170 * 293.86015 * 11 10 9 13 13 H 1.08005 * 120.00137 * 5.07385 * 12 11 10 14 14 C 1.37878 * 119.99913 * 185.07668 * 12 11 10 15 15 N 1.31515 * 119.99965 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00032 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47026 * 90.00137 * 16 14 12 18 18 H 1.48504 * 109.46835 * 209.99933 * 16 14 12 19 19 H 1.48490 * 109.46925 * 329.99927 * 16 14 12 20 20 C 1.46900 * 110.99812 * 340.12309 * 10 9 8 21 21 C 1.53005 * 117.49747 * 262.31141 * 20 10 9 22 22 C 1.53002 * 117.49854 * 193.65336 * 20 10 9 23 23 H 1.09004 * 109.46472 * 269.66697 * 1 2 3 24 24 H 1.09000 * 109.47620 * 29.66732 * 1 2 3 25 25 H 1.08998 * 109.47089 * 149.67513 * 1 2 3 26 26 H 1.07998 * 120.76656 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.00249 * 0.02562 * 5 4 3 28 28 H 1.07995 * 119.76179 * 180.02562 * 7 4 3 29 29 H 1.09004 * 109.46672 * 53.85215 * 11 10 9 30 30 H 1.08998 * 109.47279 * 173.85497 * 11 10 9 31 31 H 0.96996 * 120.00342 * 180.02562 * 15 14 12 32 32 H 1.09003 * 115.55403 * 47.98307 * 20 10 9 33 33 H 1.08994 * 117.49857 * 0.02562 * 21 20 10 34 34 H 1.09009 * 117.49304 * 145.02261 * 21 20 10 35 35 H 1.08996 * 117.50043 * 214.98363 * 22 20 10 36 36 H 1.08999 * 117.49769 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1812 0.0000 4 6 3.6024 1.1364 -0.0053 5 6 4.3872 2.3768 -0.0116 6 8 5.5993 2.3275 -0.0166 7 6 4.2413 -0.1084 -0.0049 8 7 3.5372 -1.2198 0.0009 9 6 2.2105 -1.2039 0.0060 10 7 1.5147 -2.3995 0.0115 11 6 0.9668 -2.6837 1.3445 12 6 2.0973 -2.9247 2.3114 13 1 3.1200 -2.7918 1.9904 14 6 1.8261 -3.3148 3.6057 15 7 2.8127 -3.5256 4.4493 16 14 0.0573 -3.5440 4.1610 17 1 -0.3611 -4.9473 3.9140 18 1 -0.0490 -3.2438 5.6114 19 1 -0.8239 -2.6233 3.3990 20 6 2.3629 -3.5043 -0.4555 21 6 2.2325 -3.9242 -1.9211 22 6 1.6727 -4.8217 -0.8146 23 1 -0.3632 -0.0060 1.0277 24 1 -0.3634 0.8929 -0.5086 25 1 -0.3633 -0.8870 -0.5189 26 1 1.6743 2.1263 -0.0004 27 1 3.8857 3.3332 -0.0117 28 1 5.3201 -0.1573 -0.0085 29 1 0.3746 -1.8334 1.6827 30 1 0.3348 -3.5704 1.2961 31 1 2.6220 -3.8005 5.3598 32 1 3.3522 -3.5619 -0.0016 33 1 1.5178 -3.3804 -2.5387 34 1 3.1361 -4.2583 -2.4311 35 1 2.2080 -5.7459 -0.5972 36 1 0.5892 -4.8686 -0.7048 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161710138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:11 Heat of formation + Delta-G solvation = 42.598550 kcal Electronic energy + Delta-G solvation = -19535.473471 eV Core-core repulsion = 16600.270100 eV Total energy + Delta-G solvation = -2935.203370 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.43235 -38.69220 -37.25030 -34.27612 -33.33224 -32.50760 -30.60219 -27.84704 -26.44044 -24.21947 -23.16640 -22.40441 -21.65061 -20.26455 -19.63329 -17.32417 -16.82036 -16.55297 -15.79399 -15.35916 -14.77016 -14.40721 -14.32122 -13.77256 -13.62343 -13.39467 -12.93229 -12.77030 -12.48682 -12.26798 -12.01242 -11.88043 -11.39273 -11.21474 -11.04742 -10.63152 -10.49813 -9.92576 -9.83622 -9.68980 -9.47477 -9.41276 -8.90233 -8.69248 -8.66715 -7.55450 -6.17550 -4.18958 0.85601 1.67955 2.68270 3.18884 3.26743 3.27382 4.06117 4.29710 4.34159 4.40108 4.42671 4.83784 5.03892 5.14703 5.20427 5.35276 5.45805 5.55307 5.56458 5.75926 5.92933 5.94710 5.96053 6.07374 6.22556 6.25831 6.33714 6.52222 6.56319 6.61218 6.74949 6.82640 6.90844 7.28737 7.55592 7.58394 7.89772 8.33461 8.46947 8.91445 9.41515 10.95003 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.007670 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.220212 B = 3649.846725 C = 4202.210016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.158 4.158 3 C -0.017 4.017 4 C -0.290 4.290 5 C 0.395 3.605 6 O -0.474 6.474 7 C 0.184 3.816 8 N -0.511 5.511 9 C 0.389 3.611 10 N -0.459 5.459 11 C 0.166 3.834 12 C -0.554 4.554 13 H 0.088 0.912 14 C 0.077 3.923 15 N -0.890 5.890 16 Si 0.872 3.128 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.045 3.955 21 C -0.181 4.181 22 C -0.167 4.167 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.136 0.864 27 H 0.098 0.902 28 H 0.157 0.843 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 7.122 -10.246 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.163 4.163 3 C -0.043 4.043 4 C -0.295 4.295 5 C 0.254 3.746 6 O -0.349 6.349 7 C 0.023 3.977 8 N -0.223 5.223 9 C 0.157 3.843 10 N -0.176 5.176 11 C 0.043 3.957 12 C -0.592 4.592 13 H 0.106 0.894 14 C -0.127 4.127 15 N -0.528 5.528 16 Si 0.699 3.301 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.063 4.063 21 C -0.219 4.219 22 C -0.204 4.204 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.154 0.846 27 H 0.114 0.886 28 H 0.174 0.826 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.292 6.202 -10.357 12.812 hybrid contribution -0.820 0.454 1.117 1.459 sum -5.112 6.656 -9.240 12.482 Atomic orbital electron populations 1.20642 0.90022 1.02633 1.02419 1.20016 0.97738 0.92163 1.06370 1.21154 0.92495 0.97969 0.92634 1.21595 0.95273 0.97410 1.15181 1.23672 0.88677 0.92359 0.69854 1.90513 1.17441 1.90694 1.36259 1.22903 1.00081 0.86439 0.88255 1.67955 1.07494 1.30966 1.15854 1.19902 0.87352 0.91087 0.85928 1.59443 1.31111 0.99859 1.27175 1.20345 0.96140 0.97292 0.81955 1.21706 0.94615 1.47538 0.95389 0.89363 1.24907 0.96860 0.94392 0.96495 1.69909 1.31353 1.45964 1.05547 0.86910 0.85707 0.79209 0.78304 1.19929 1.21093 1.18946 1.22095 0.97759 0.90939 0.95518 1.23045 1.02562 1.04167 0.92111 1.22906 1.00494 0.94358 1.02684 0.91266 0.92275 0.90361 0.84621 0.88619 0.82558 0.94517 0.94308 0.92531 0.86838 0.89307 0.89388 0.88963 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 8.65 36.01 0.31 -1.08 16 2 C -0.16 -2.63 5.72 -104.70 -0.60 -3.23 16 3 C -0.02 -0.24 9.54 -39.21 -0.37 -0.61 16 4 C -0.29 -4.41 5.89 -104.92 -0.62 -5.02 16 5 C 0.39 5.10 11.46 34.18 0.39 5.49 16 6 O -0.47 -7.80 17.18 5.54 0.10 -7.71 16 7 C 0.18 3.33 10.77 -17.03 -0.18 3.14 16 8 N -0.51 -10.48 8.06 -12.07 -0.10 -10.58 16 9 C 0.39 7.70 5.19 -155.31 -0.81 6.89 16 10 N -0.46 -9.22 3.91 -167.03 -0.65 -9.87 16 11 C 0.17 3.74 3.83 -4.98 -0.02 3.73 16 12 C -0.55 -15.00 8.47 -34.44 -0.29 -15.30 16 13 H 0.09 2.67 6.47 -52.48 -0.34 2.33 16 14 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 16 Si 0.87 20.50 27.37 -169.99 -4.65 15.85 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.26 -5.86 6.69 56.52 0.38 -5.48 16 20 C 0.05 0.88 3.60 -67.71 -0.24 0.64 16 21 C -0.18 -2.88 10.46 -26.69 -0.28 -3.16 16 22 C -0.17 -2.82 10.04 -26.69 -0.27 -3.08 16 23 H 0.07 1.00 7.42 -51.93 -0.39 0.62 16 24 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.08 1.14 7.48 -51.93 -0.39 0.75 16 26 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.10 0.81 8.06 -52.49 -0.42 0.38 16 28 H 0.16 2.67 7.65 -52.49 -0.40 2.27 16 29 H 0.04 0.82 5.57 -51.93 -0.29 0.53 16 30 H 0.04 0.87 7.03 -51.93 -0.37 0.50 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.11 2.56 6.72 -51.93 -0.35 2.21 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.09 1.28 8.14 -51.92 -0.42 0.85 16 35 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -31.58 303.89 -7.66 -39.24 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.63 Total: 3.99 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.08 Total: -9.55 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.02 Total: -46.41 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.10 Total: -7.71 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.65 Total: 15.85 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.58 -7.66 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161710138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.840 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds