Wall clock time and date at job start Mon Mar 30 2020 06:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36793 * 120.29118 * 2 1 4 4 C 1.40614 * 118.46751 * 180.24697 * 3 2 1 5 5 C 1.46782 * 120.50206 * 179.72585 * 4 3 2 6 6 O 1.21304 * 119.99772 * 180.02562 * 5 4 3 7 7 C 1.39924 * 118.99209 * 359.74216 * 4 3 2 8 8 N 1.31567 * 120.47675 * 359.97438 * 7 4 3 9 9 C 1.32686 * 121.66516 * 0.02562 * 8 7 4 10 10 N 1.38338 * 119.50717 * 179.97438 * 9 8 7 11 11 C 1.46898 * 111.00137 * 104.07558 * 10 9 8 12 12 C 1.50695 * 109.47170 * 293.86015 * 11 10 9 13 13 H 1.08005 * 120.00137 * 5.07385 * 12 11 10 14 14 C 1.37878 * 119.99913 * 185.07668 * 12 11 10 15 15 N 1.31515 * 119.99965 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00032 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47026 * 90.00137 * 16 14 12 18 18 H 1.48504 * 109.46835 * 209.99933 * 16 14 12 19 19 H 1.48490 * 109.46925 * 329.99927 * 16 14 12 20 20 C 1.46900 * 110.99812 * 340.12309 * 10 9 8 21 21 C 1.53005 * 117.49747 * 262.31141 * 20 10 9 22 22 C 1.53002 * 117.49854 * 193.65336 * 20 10 9 23 23 H 1.09004 * 109.46472 * 269.66697 * 1 2 3 24 24 H 1.09000 * 109.47620 * 29.66732 * 1 2 3 25 25 H 1.08998 * 109.47089 * 149.67513 * 1 2 3 26 26 H 1.07998 * 120.76656 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.00249 * 0.02562 * 5 4 3 28 28 H 1.07995 * 119.76179 * 180.02562 * 7 4 3 29 29 H 1.09004 * 109.46672 * 53.85215 * 11 10 9 30 30 H 1.08998 * 109.47279 * 173.85497 * 11 10 9 31 31 H 0.96996 * 120.00342 * 180.02562 * 15 14 12 32 32 H 1.09003 * 115.55403 * 47.98307 * 20 10 9 33 33 H 1.08994 * 117.49857 * 0.02562 * 21 20 10 34 34 H 1.09009 * 117.49304 * 145.02261 * 21 20 10 35 35 H 1.08996 * 117.50043 * 214.98363 * 22 20 10 36 36 H 1.08999 * 117.49769 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1812 0.0000 4 6 3.6024 1.1364 -0.0053 5 6 4.3872 2.3768 -0.0116 6 8 5.5993 2.3275 -0.0166 7 6 4.2413 -0.1084 -0.0049 8 7 3.5372 -1.2198 0.0009 9 6 2.2105 -1.2039 0.0060 10 7 1.5147 -2.3995 0.0115 11 6 0.9668 -2.6837 1.3445 12 6 2.0973 -2.9247 2.3114 13 1 3.1200 -2.7918 1.9904 14 6 1.8261 -3.3148 3.6057 15 7 2.8127 -3.5256 4.4493 16 14 0.0573 -3.5440 4.1610 17 1 -0.3611 -4.9473 3.9140 18 1 -0.0490 -3.2438 5.6114 19 1 -0.8239 -2.6233 3.3990 20 6 2.3629 -3.5043 -0.4555 21 6 2.2325 -3.9242 -1.9211 22 6 1.6727 -4.8217 -0.8146 23 1 -0.3632 -0.0060 1.0277 24 1 -0.3634 0.8929 -0.5086 25 1 -0.3633 -0.8870 -0.5189 26 1 1.6743 2.1263 -0.0004 27 1 3.8857 3.3332 -0.0117 28 1 5.3201 -0.1573 -0.0085 29 1 0.3746 -1.8334 1.6827 30 1 0.3348 -3.5704 1.2961 31 1 2.6220 -3.8005 5.3598 32 1 3.3522 -3.5619 -0.0016 33 1 1.5178 -3.3804 -2.5387 34 1 3.1361 -4.2583 -2.4311 35 1 2.2080 -5.7459 -0.5972 36 1 0.5892 -4.8686 -0.7048 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161710138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:11 Heat of formation + Delta-G solvation = 21.942091 kcal Electronic energy + Delta-G solvation = -19536.369202 eV Core-core repulsion = 16600.270100 eV Total energy + Delta-G solvation = -2936.099102 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.76449 -39.93471 -38.62729 -35.79699 -34.66478 -34.39334 -32.03117 -29.52145 -27.76752 -25.53989 -24.52113 -24.06104 -23.04135 -21.46906 -21.13790 -19.17949 -18.18689 -18.00507 -17.06975 -16.97045 -16.10999 -15.99660 -15.67116 -15.16488 -14.99217 -14.71355 -14.54522 -14.08928 -13.95495 -13.58405 -13.47225 -13.28537 -13.04344 -12.71462 -12.42401 -12.30556 -12.13110 -11.73876 -11.30898 -11.09282 -10.90051 -10.80863 -10.71543 -10.26569 -10.08332 -9.05255 -8.31016 -6.37481 -0.39545 0.43124 1.34415 1.35223 1.46104 1.54390 2.32054 2.69055 2.96266 3.01560 3.07873 3.38979 3.55801 3.92166 4.01669 4.08123 4.13357 4.22502 4.37959 4.56574 4.68319 4.75278 4.77232 4.83918 4.87247 4.97264 4.98448 5.05238 5.14753 5.29255 5.30764 5.37654 5.41317 5.63126 5.90888 6.22771 6.39504 6.52736 6.72815 7.10713 7.27508 8.85603 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.007670 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.220212 B = 3649.846725 C = 4202.210016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.164 4.164 3 C -0.002 4.002 4 C -0.282 4.282 5 C 0.407 3.593 6 O -0.513 6.513 7 C 0.146 3.854 8 N -0.547 5.547 9 C 0.345 3.655 10 N -0.445 5.445 11 C 0.174 3.826 12 C -0.549 4.549 13 H 0.038 0.962 14 C 0.011 3.989 15 N -0.948 5.948 16 Si 0.945 3.055 17 H -0.265 1.265 18 H -0.288 1.288 19 H -0.235 1.235 20 C 0.011 3.989 21 C -0.150 4.150 22 C -0.160 4.160 23 H 0.065 0.935 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.195 0.805 27 H 0.167 0.833 28 H 0.147 0.853 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.265 0.735 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.290 9.552 -11.541 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.169 4.169 3 C -0.027 4.027 4 C -0.286 4.286 5 C 0.268 3.732 6 O -0.389 6.389 7 C -0.014 4.014 8 N -0.260 5.260 9 C 0.115 3.885 10 N -0.162 5.162 11 C 0.050 3.950 12 C -0.588 4.588 13 H 0.057 0.943 14 C -0.187 4.187 15 N -0.589 5.589 16 Si 0.767 3.233 17 H -0.190 1.190 18 H -0.214 1.214 19 H -0.158 1.158 20 C -0.098 4.098 21 C -0.187 4.187 22 C -0.198 4.198 23 H 0.084 0.916 24 H 0.119 0.881 25 H 0.088 0.912 26 H 0.213 0.787 27 H 0.183 0.817 28 H 0.164 0.836 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.636 8.654 -11.694 16.430 hybrid contribution 0.410 -0.206 1.454 1.525 sum -7.226 8.447 -10.240 15.113 Atomic orbital electron populations 1.20694 0.87756 1.04364 1.02561 1.20495 0.99465 0.91728 1.05185 1.21752 0.91659 0.99434 0.89890 1.22068 0.96607 0.97307 1.12667 1.24481 0.87821 0.93270 0.67601 1.90525 1.19507 1.91054 1.37842 1.23014 1.00028 0.87785 0.90581 1.67791 1.08802 1.32743 1.16648 1.20267 0.87406 0.92172 0.88693 1.59539 1.31235 1.00119 1.25288 1.20136 0.94477 0.97691 0.82678 1.21905 0.94115 1.46274 0.96470 0.94333 1.25926 1.02038 0.94195 0.96546 1.70100 1.34348 1.48337 1.06068 0.85752 0.79732 0.80100 0.77692 1.18977 1.21356 1.15792 1.21940 0.96454 0.92883 0.98499 1.23063 1.03002 1.02315 0.90351 1.23000 1.00924 0.93378 1.02464 0.91634 0.88137 0.91189 0.78750 0.81703 0.83594 0.93539 0.93608 0.92644 0.91490 0.87850 0.88202 0.88608 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.32 8.65 71.24 0.62 -1.71 16 2 C -0.16 -5.08 5.72 -19.91 -0.11 -5.19 16 3 C 0.00 -0.06 9.54 22.51 0.21 0.16 16 4 C -0.28 -8.07 5.89 -20.06 -0.12 -8.19 16 5 C 0.41 9.17 11.46 70.06 0.80 9.97 16 6 O -0.51 -16.27 17.18 -3.10 -0.05 -16.33 16 7 C 0.15 5.54 10.77 85.14 0.92 6.45 16 8 N -0.55 -23.87 8.06 -192.11 -1.55 -25.41 16 9 C 0.34 13.83 5.19 133.28 0.69 14.52 16 10 N -0.44 -18.02 3.91 -682.36 -2.67 -20.69 16 11 C 0.17 7.87 3.83 85.56 0.33 8.20 16 12 C -0.55 -30.99 8.47 25.60 0.22 -30.77 16 13 H 0.04 2.52 6.47 -2.91 -0.02 2.50 16 14 C 0.01 0.62 5.47 84.65 0.46 1.08 16 15 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 16 Si 0.94 42.25 27.37 68.60 1.88 44.13 16 17 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.24 -9.30 6.69 99.48 0.67 -8.63 16 20 C 0.01 0.44 3.60 44.92 0.16 0.60 16 21 C -0.15 -4.69 10.46 30.62 0.32 -4.37 16 22 C -0.16 -5.38 10.04 30.62 0.31 -5.07 16 23 H 0.07 1.64 7.42 -2.38 -0.02 1.63 16 24 H 0.10 1.57 8.09 -2.39 -0.02 1.55 16 25 H 0.07 1.81 7.48 -2.39 -0.02 1.80 16 26 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 27 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 28 H 0.15 5.51 7.65 -2.91 -0.02 5.49 16 29 H 0.05 2.01 5.57 -2.39 -0.01 1.99 16 30 H 0.05 2.00 7.03 -2.39 -0.02 1.98 16 31 H 0.26 15.60 8.31 -92.71 -0.77 14.82 16 32 H 0.07 3.33 6.72 -2.39 -0.02 3.31 16 33 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 35 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -76.27 303.89 3.76 -72.51 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 1.04 Total: 19.54 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.81 Total: -14.32 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -3.92 Total: -105.54 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.05 Total: -16.33 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.13 kcal Total: -76.27 3.76 -72.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161710138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.452 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds