Wall clock time and date at job start Mon Mar 30 2020 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47379 * 2 1 4 4 C 1.50699 * 109.47587 * 120.00481 * 2 1 3 5 5 H 1.07999 * 119.99719 * 114.42125 * 4 2 1 6 6 C 1.37869 * 119.99774 * 294.42580 * 4 2 1 7 7 N 1.31517 * 120.00139 * 157.46191 * 6 4 2 8 8 Si 1.86806 * 120.00154 * 337.73043 * 6 4 2 9 9 H 1.48493 * 109.47104 * 269.72609 * 8 6 4 10 10 H 1.48495 * 109.46743 * 29.72781 * 8 6 4 11 11 H 1.48505 * 109.47027 * 149.72413 * 8 6 4 12 12 N 1.46504 * 109.46693 * 240.00272 * 2 1 3 13 13 C 1.34779 * 120.00057 * 84.99971 * 12 2 1 14 14 O 1.21595 * 119.99822 * 5.45841 * 13 12 2 15 15 N 1.34773 * 120.00633 * 185.45865 * 13 12 2 16 16 C 1.46541 * 124.97455 * 5.72533 * 15 13 12 17 17 C 1.53741 * 105.19643 * 179.91858 * 16 15 13 18 18 C 1.51213 * 104.58495 * 0.33177 * 17 16 15 19 19 C 1.38187 * 130.96691 * 179.81693 * 18 17 16 20 20 C 1.38229 * 120.14738 * 179.97438 * 19 18 17 21 21 C 1.38299 * 119.82525 * 359.97438 * 20 19 18 22 22 C 1.37834 * 120.22414 * 359.97438 * 21 20 19 23 23 C 1.38556 * 108.56367 * 359.78546 * 18 17 16 24 24 H 1.09006 * 109.47045 * 293.73679 * 1 2 3 25 25 H 1.08992 * 109.47680 * 53.73544 * 1 2 3 26 26 H 1.09004 * 109.47304 * 173.74432 * 1 2 3 27 27 H 0.97001 * 119.99977 * 355.20942 * 7 6 4 28 28 H 0.96992 * 120.00271 * 264.99529 * 12 2 1 29 29 H 1.09002 * 110.29523 * 298.96562 * 16 15 13 30 30 H 1.08999 * 110.29890 * 61.10321 * 16 15 13 31 31 H 1.08999 * 110.59432 * 241.46411 * 17 16 15 32 32 H 1.09001 * 110.23533 * 119.01838 * 17 16 15 33 33 H 1.07998 * 119.92865 * 359.94996 * 19 18 17 34 34 H 1.08004 * 120.08546 * 180.02562 * 20 19 18 35 35 H 1.08007 * 119.88351 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.85715 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5770 -1.6381 1.1337 6 6 1.7968 -0.1763 2.4793 7 7 1.8184 -0.9521 3.5411 8 14 1.4393 1.6480 2.6627 9 1 2.7127 2.3837 2.8680 10 1 0.7714 2.1474 1.4340 11 1 0.5493 1.8629 3.8320 12 7 2.0182 -0.6906 -1.1963 13 6 2.1469 -0.0182 -2.3572 14 8 1.9534 1.1818 -2.3894 15 7 2.4900 -0.6758 -3.4825 16 6 2.6321 -2.1299 -3.5955 17 6 3.0294 -2.3835 -5.0589 18 6 3.0918 -1.0065 -5.6806 19 6 3.3999 -0.6064 -6.9669 20 6 3.3881 0.7356 -7.2980 21 6 3.0664 1.6781 -6.3384 22 6 2.7574 1.2834 -5.0544 23 6 2.7685 -0.0701 -4.7119 24 1 -0.3633 0.4137 0.9408 25 1 -0.3634 0.6078 -0.8285 26 1 -0.3634 -1.0216 -0.1120 27 1 1.9309 -1.9102 3.4395 28 1 2.2489 -1.6317 -1.1528 29 1 3.4118 -2.4870 -2.9227 30 1 1.6849 -2.6208 -3.3722 31 1 2.2778 -2.9933 -5.5601 32 1 4.0054 -2.8666 -5.1062 33 1 3.6509 -1.3437 -7.7150 34 1 3.6286 1.0472 -8.3038 35 1 3.0572 2.7269 -6.5960 36 1 2.5066 2.0244 -4.3098 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185660539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:31 Heat of formation + Delta-G solvation = 1.423673 kcal Electronic energy + Delta-G solvation = -19193.449542 eV Core-core repulsion = 16256.460695 eV Total energy + Delta-G solvation = -2936.988847 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98108 -38.68950 -36.25305 -35.07672 -32.56932 -32.18473 -30.33536 -28.99098 -28.75240 -24.90463 -23.50580 -23.12642 -21.37342 -20.67223 -19.53336 -18.34015 -17.08251 -16.40871 -16.23056 -15.66396 -15.04677 -14.68962 -14.20788 -13.77344 -13.58768 -13.25202 -12.78044 -12.67953 -12.64091 -12.33316 -12.31606 -12.01221 -11.64959 -11.56272 -11.30614 -10.90510 -10.56523 -10.27930 -10.12781 -9.78223 -9.62543 -9.17913 -8.75390 -8.34965 -8.29093 -7.56727 -6.63203 -4.24123 1.38911 1.48591 2.79508 3.40215 3.44542 3.49999 3.60444 3.93928 4.25813 4.42151 4.47060 4.65312 4.96322 5.02477 5.10397 5.13617 5.24831 5.40942 5.51497 5.66711 5.73221 5.74184 6.04621 6.23607 6.37069 6.47427 6.50180 6.56046 6.63658 6.64625 6.88199 7.08690 7.22917 7.35604 7.43263 7.72032 8.21533 8.51280 8.69151 9.02349 9.42271 10.75916 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036096 B = 0.005017 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.525974 B = 5579.667766 C = 6110.068857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.256 3.744 3 H 0.046 0.954 4 C -0.624 4.624 5 H 0.062 0.938 6 C 0.046 3.954 7 N -0.890 5.890 8 Si 1.035 2.965 9 H -0.282 1.282 10 H -0.270 1.270 11 H -0.283 1.283 12 N -0.709 5.709 13 C 0.705 3.295 14 O -0.578 6.578 15 N -0.574 5.574 16 C 0.098 3.902 17 C -0.080 4.080 18 C -0.154 4.154 19 C -0.078 4.078 20 C -0.157 4.157 21 C -0.092 4.092 22 C -0.138 4.138 23 C 0.182 3.818 24 H 0.056 0.944 25 H 0.028 0.972 26 H 0.043 0.957 27 H 0.271 0.729 28 H 0.391 0.609 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 -2.318 -19.248 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.153 3.847 3 H 0.064 0.936 4 C -0.662 4.662 5 H 0.080 0.920 6 C -0.161 4.161 7 N -0.522 5.522 8 Si 0.861 3.139 9 H -0.209 1.209 10 H -0.195 1.195 11 H -0.209 1.209 12 N -0.360 5.360 13 C 0.407 3.593 14 O -0.456 6.456 15 N -0.300 5.300 16 C -0.025 4.025 17 C -0.117 4.117 18 C -0.157 4.157 19 C -0.097 4.097 20 C -0.176 4.176 21 C -0.111 4.111 22 C -0.159 4.159 23 C 0.084 3.916 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.224 0.776 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.620 -0.268 -17.844 17.920 hybrid contribution 0.419 -1.842 -0.987 2.131 sum 2.040 -2.110 -18.832 19.059 Atomic orbital electron populations 1.22392 0.98984 0.99856 0.99828 1.19061 0.90298 0.94257 0.81103 0.93623 1.21985 1.42083 1.11240 0.90883 0.92005 1.25637 0.92998 1.05878 0.91613 1.70842 1.43093 1.06574 1.31723 0.84159 0.77704 0.75629 0.76378 1.20862 1.19547 1.20889 1.45642 1.68315 1.13702 1.08373 1.15878 0.78406 0.85175 0.79795 1.90842 1.57575 1.12543 1.84624 1.45235 1.69549 1.07178 1.08050 1.22097 1.02333 0.80235 0.97799 1.21020 1.02865 0.94697 0.93133 1.19964 1.07042 0.94659 0.94071 1.20267 0.99399 0.95949 0.94056 1.20922 1.04425 0.92760 0.99492 1.20909 0.98226 0.99536 0.92409 1.21025 1.03290 0.94023 0.97553 1.18221 0.95725 0.93313 0.84338 0.92503 0.95264 0.93809 0.91915 0.77604 0.90145 0.90118 0.89372 0.89404 0.86150 0.86055 0.85800 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.95 37.16 0.33 -3.14 16 2 C 0.26 6.26 2.16 -69.08 -0.15 6.11 16 3 H 0.05 1.22 5.87 -51.93 -0.30 0.91 16 4 C -0.62 -16.87 8.96 -34.44 -0.31 -17.18 16 5 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 6 C 0.05 1.30 5.22 -17.82 -0.09 1.20 16 7 N -0.89 -26.24 13.70 55.43 0.76 -25.48 16 8 Si 1.03 25.02 26.39 -169.99 -4.49 20.54 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.27 -6.28 5.98 56.52 0.34 -5.95 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.71 -14.94 5.01 -59.81 -0.30 -15.24 16 13 C 0.71 14.73 8.38 -86.92 -0.73 14.00 16 14 O -0.58 -13.87 14.17 5.28 0.07 -13.79 16 15 N -0.57 -9.73 3.13 -118.25 -0.37 -10.10 16 16 C 0.10 1.20 6.41 -3.63 -0.02 1.18 16 17 C -0.08 -0.80 6.93 -27.25 -0.19 -0.99 16 18 C -0.15 -1.97 6.23 -104.27 -0.65 -2.62 16 19 C -0.08 -0.86 10.04 -39.60 -0.40 -1.26 16 20 C -0.16 -1.72 10.06 -39.56 -0.40 -2.12 16 21 C -0.09 -1.17 10.02 -39.71 -0.40 -1.56 16 22 C -0.14 -2.21 9.46 -39.21 -0.37 -2.59 16 23 C 0.18 2.93 6.62 -83.57 -0.55 2.38 16 24 H 0.06 1.31 5.79 -51.93 -0.30 1.01 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.27 7.87 8.73 -40.82 -0.36 7.52 16 28 H 0.39 7.29 7.43 -40.82 -0.30 6.99 16 29 H 0.08 0.90 8.02 -51.93 -0.42 0.48 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.14 2.57 6.30 -52.49 -0.33 2.24 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -32.05 296.98 -8.44 -40.49 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.67 Total: 5.68 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -3.93 Total: -6.58 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.09 Total: -50.82 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.07 Total: -13.79 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -4.49 Total: 20.54 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.05 -8.44 -40.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185660539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.912 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds