Wall clock time and date at job start Mon Mar 30 2020 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47379 * 2 1 4 4 C 1.50699 * 109.47587 * 120.00481 * 2 1 3 5 5 H 1.07999 * 119.99719 * 114.42125 * 4 2 1 6 6 C 1.37869 * 119.99774 * 294.42580 * 4 2 1 7 7 N 1.31517 * 120.00139 * 157.46191 * 6 4 2 8 8 Si 1.86806 * 120.00154 * 337.73043 * 6 4 2 9 9 H 1.48493 * 109.47104 * 269.72609 * 8 6 4 10 10 H 1.48495 * 109.46743 * 29.72781 * 8 6 4 11 11 H 1.48505 * 109.47027 * 149.72413 * 8 6 4 12 12 N 1.46504 * 109.46693 * 240.00272 * 2 1 3 13 13 C 1.34779 * 120.00057 * 84.99971 * 12 2 1 14 14 O 1.21595 * 119.99822 * 5.45841 * 13 12 2 15 15 N 1.34773 * 120.00633 * 185.45865 * 13 12 2 16 16 C 1.46541 * 124.97455 * 5.72533 * 15 13 12 17 17 C 1.53741 * 105.19643 * 179.91858 * 16 15 13 18 18 C 1.51213 * 104.58495 * 0.33177 * 17 16 15 19 19 C 1.38187 * 130.96691 * 179.81693 * 18 17 16 20 20 C 1.38229 * 120.14738 * 179.97438 * 19 18 17 21 21 C 1.38299 * 119.82525 * 359.97438 * 20 19 18 22 22 C 1.37834 * 120.22414 * 359.97438 * 21 20 19 23 23 C 1.38556 * 108.56367 * 359.78546 * 18 17 16 24 24 H 1.09006 * 109.47045 * 293.73679 * 1 2 3 25 25 H 1.08992 * 109.47680 * 53.73544 * 1 2 3 26 26 H 1.09004 * 109.47304 * 173.74432 * 1 2 3 27 27 H 0.97001 * 119.99977 * 355.20942 * 7 6 4 28 28 H 0.96992 * 120.00271 * 264.99529 * 12 2 1 29 29 H 1.09002 * 110.29523 * 298.96562 * 16 15 13 30 30 H 1.08999 * 110.29890 * 61.10321 * 16 15 13 31 31 H 1.08999 * 110.59432 * 241.46411 * 17 16 15 32 32 H 1.09001 * 110.23533 * 119.01838 * 17 16 15 33 33 H 1.07998 * 119.92865 * 359.94996 * 19 18 17 34 34 H 1.08004 * 120.08546 * 180.02562 * 20 19 18 35 35 H 1.08007 * 119.88351 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.85715 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5770 -1.6381 1.1337 6 6 1.7968 -0.1763 2.4793 7 7 1.8184 -0.9521 3.5411 8 14 1.4393 1.6480 2.6627 9 1 2.7127 2.3837 2.8680 10 1 0.7714 2.1474 1.4340 11 1 0.5493 1.8629 3.8320 12 7 2.0182 -0.6906 -1.1963 13 6 2.1469 -0.0182 -2.3572 14 8 1.9534 1.1818 -2.3894 15 7 2.4900 -0.6758 -3.4825 16 6 2.6321 -2.1299 -3.5955 17 6 3.0294 -2.3835 -5.0589 18 6 3.0918 -1.0065 -5.6806 19 6 3.3999 -0.6064 -6.9669 20 6 3.3881 0.7356 -7.2980 21 6 3.0664 1.6781 -6.3384 22 6 2.7574 1.2834 -5.0544 23 6 2.7685 -0.0701 -4.7119 24 1 -0.3633 0.4137 0.9408 25 1 -0.3634 0.6078 -0.8285 26 1 -0.3634 -1.0216 -0.1120 27 1 1.9309 -1.9102 3.4395 28 1 2.2489 -1.6317 -1.1528 29 1 3.4118 -2.4870 -2.9227 30 1 1.6849 -2.6208 -3.3722 31 1 2.2778 -2.9933 -5.5601 32 1 4.0054 -2.8666 -5.1062 33 1 3.6509 -1.3437 -7.7150 34 1 3.6286 1.0472 -8.3038 35 1 3.0572 2.7269 -6.5960 36 1 2.5066 2.0244 -4.3098 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185660539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:31 Heat of formation + Delta-G solvation = -19.165000 kcal Electronic energy + Delta-G solvation = -19194.342333 eV Core-core repulsion = 16256.460695 eV Total energy + Delta-G solvation = -2937.881639 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.19578 -40.09256 -37.39930 -36.91095 -34.55337 -33.33549 -31.86544 -30.13175 -29.94600 -26.94314 -24.81662 -24.11217 -22.58819 -22.09928 -21.21257 -20.01942 -18.82157 -17.75853 -17.40847 -16.70200 -16.46655 -16.06210 -15.56276 -15.36265 -14.89463 -14.81851 -14.47879 -14.29454 -13.69891 -13.64671 -13.59961 -13.31787 -13.23223 -12.87961 -12.50738 -12.49474 -12.19981 -11.91629 -11.68902 -11.27371 -11.21989 -11.21518 -10.48011 -10.09903 -9.70825 -8.85900 -8.70165 -6.46075 0.38995 0.46215 1.44612 1.46571 1.48553 1.70391 2.01111 2.40345 2.89293 2.91518 2.95021 3.54169 3.62898 4.11868 4.15191 4.17568 4.36391 4.41851 4.49779 4.58394 4.62998 4.66519 4.71823 4.92653 4.97253 4.97455 5.13737 5.24289 5.38343 5.49445 5.53333 5.55710 5.62546 5.68052 5.98515 6.05684 6.15482 6.49393 6.90533 7.23362 7.43709 8.53736 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036096 B = 0.005017 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.525974 B = 5579.667766 C = 6110.068857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.260 3.740 3 H 0.024 0.976 4 C -0.621 4.621 5 H 0.043 0.957 6 C 0.006 3.994 7 N -0.917 5.917 8 Si 1.068 2.932 9 H -0.275 1.275 10 H -0.260 1.260 11 H -0.275 1.275 12 N -0.709 5.709 13 C 0.702 3.298 14 O -0.620 6.620 15 N -0.576 5.576 16 C 0.086 3.914 17 C -0.070 4.070 18 C -0.147 4.147 19 C -0.074 4.074 20 C -0.144 4.144 21 C -0.098 4.098 22 C -0.169 4.169 23 C 0.134 3.866 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.262 0.738 28 H 0.401 0.599 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.141 0.859 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 -3.275 -22.343 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.156 3.844 3 H 0.041 0.959 4 C -0.658 4.658 5 H 0.061 0.939 6 C -0.196 4.196 7 N -0.551 5.551 8 Si 0.890 3.110 9 H -0.201 1.201 10 H -0.185 1.185 11 H -0.200 1.200 12 N -0.361 5.361 13 C 0.404 3.596 14 O -0.500 6.500 15 N -0.302 5.302 16 C -0.035 4.035 17 C -0.107 4.107 18 C -0.151 4.151 19 C -0.093 4.093 20 C -0.163 4.163 21 C -0.117 4.117 22 C -0.190 4.190 23 C 0.038 3.962 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.237 0.763 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.178 0.822 34 H 0.176 0.824 35 H 0.159 0.841 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.045 -1.275 -21.001 21.138 hybrid contribution 0.373 -1.587 -0.201 1.643 sum 2.418 -2.862 -21.202 21.530 Atomic orbital electron populations 1.22266 0.97595 1.00604 0.99811 1.18770 0.91258 0.92960 0.81461 0.95850 1.22097 1.41238 1.10441 0.92058 0.93872 1.26691 0.92676 1.08639 0.91635 1.70932 1.45383 1.06262 1.32476 0.83704 0.78215 0.72001 0.77043 1.20055 1.18456 1.19972 1.45324 1.68842 1.14066 1.07881 1.15968 0.78290 0.84765 0.80588 1.90808 1.59302 1.14422 1.85496 1.45171 1.68845 1.09014 1.07141 1.22477 1.03379 0.77537 1.00109 1.21122 1.05064 0.93553 0.90968 1.20383 1.05449 0.95220 0.94019 1.20778 0.97666 0.96873 0.93935 1.21401 1.01902 0.92488 1.00460 1.21161 0.97891 1.01199 0.91419 1.20995 1.05675 0.93863 0.98498 1.18613 0.98587 0.94145 0.84858 0.92818 0.94828 0.92750 0.92846 0.76340 0.89350 0.89089 0.86665 0.86852 0.82163 0.82379 0.84071 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.57 8.95 71.98 0.64 -5.93 16 2 C 0.26 12.90 2.16 44.24 0.10 13.00 16 3 H 0.02 1.28 5.87 -2.39 -0.01 1.27 16 4 C -0.62 -34.08 8.96 25.60 0.23 -33.85 16 5 H 0.04 2.48 7.96 -2.91 -0.02 2.46 16 6 C 0.01 0.35 5.22 84.65 0.44 0.79 16 7 N -0.92 -54.79 13.70 21.44 0.29 -54.50 16 8 Si 1.07 50.82 26.39 68.60 1.81 52.63 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.26 -11.87 5.98 99.48 0.60 -11.27 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.71 -30.35 5.01 -461.40 -2.31 -32.65 16 13 C 0.70 30.13 8.38 179.05 1.50 31.63 16 14 O -0.62 -31.18 14.17 -4.02 -0.06 -31.23 16 15 N -0.58 -19.55 3.13 -646.28 -2.02 -21.57 16 16 C 0.09 1.96 6.41 86.62 0.55 2.51 16 17 C -0.07 -1.15 6.93 30.26 0.21 -0.94 16 18 C -0.15 -3.35 6.23 -19.64 -0.12 -3.47 16 19 C -0.07 -1.31 10.04 22.26 0.22 -1.08 16 20 C -0.14 -2.60 10.06 22.28 0.22 -2.38 16 21 C -0.10 -2.37 10.02 22.19 0.22 -2.15 16 22 C -0.17 -5.60 9.46 22.51 0.21 -5.39 16 23 C 0.13 4.29 6.62 38.27 0.25 4.54 16 24 H 0.05 2.45 5.79 -2.38 -0.01 2.43 16 25 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 27 H 0.26 15.61 8.73 -92.71 -0.81 14.80 16 28 H 0.40 15.09 7.43 -92.71 -0.69 14.40 16 29 H 0.09 1.84 8.02 -2.39 -0.02 1.82 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.10 4.13 6.30 -2.91 -0.02 4.11 16 Total: -1.00 -72.37 296.98 2.66 -69.71 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.26 Total: 20.32 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 4.69 Total: -2.71 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.04 Total: -108.73 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.06 Total: -31.23 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 1.81 Total: 52.63 kcal Total: -72.37 2.66 -69.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185660539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.543 kcal (2) G-P(sol) polarization free energy of solvation -72.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds