Wall clock time and date at job start Mon Mar 30 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47271 * 59.99842 * 9 7 5 11 11 H 1.48496 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47134 * 299.99873 * 9 7 5 13 13 O 1.42905 * 109.47264 * 64.99692 * 3 2 1 14 14 C 1.34908 * 116.99710 * 270.00403 * 13 3 2 15 15 O 1.21618 * 120.00244 * 359.97438 * 14 13 3 16 16 C 1.46236 * 119.99571 * 179.97438 * 14 13 3 17 17 C 1.34920 * 119.99788 * 179.97438 * 16 14 13 18 18 C 1.47178 * 119.99953 * 180.02562 * 17 16 14 19 19 C 1.39854 * 120.16903 * 359.72890 * 18 17 16 20 20 C 1.37891 * 119.82261 * 179.72144 * 19 18 17 21 21 C 1.38408 * 120.16628 * 0.55252 * 20 19 18 22 22 C 1.38397 * 120.35455 * 359.72042 * 21 20 19 23 23 C 1.37891 * 120.16949 * 359.97438 * 22 21 20 24 24 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 25 25 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 27 27 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 28 28 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 29 29 H 0.97001 * 119.99839 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.00260 * 0.02562 * 16 14 13 31 31 H 1.07994 * 119.99812 * 359.97438 * 17 16 14 32 32 H 1.08007 * 120.08964 * 359.97287 * 19 18 17 33 33 H 1.07998 * 119.91104 * 180.29317 * 20 19 18 34 34 H 1.08001 * 119.81931 * 179.74290 * 21 20 19 35 35 H 1.07998 * 119.91999 * 180.02562 * 22 21 20 36 36 H 1.08002 * 120.08433 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0051 0.8811 -1.3816 10 1 6.5976 0.1472 -0.2347 11 1 6.3979 0.2176 -2.6507 12 1 6.4996 2.2813 -1.3820 13 8 1.6620 2.0814 1.2210 14 6 0.4728 2.7184 1.2363 15 8 -0.2233 2.7307 0.2391 16 6 0.0208 3.3940 2.4519 17 6 -1.1682 4.0314 2.4670 18 6 -1.6229 4.7119 3.6903 19 6 -0.8278 4.6951 4.8407 20 6 -1.2581 5.3398 5.9811 21 6 -2.4785 5.9926 5.9926 22 6 -3.2736 6.0089 4.8599 23 6 -2.8544 5.3741 3.7098 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8294 -0.0613 -2.9497 30 1 0.6391 3.3834 3.3373 31 1 -1.7859 4.0430 1.5813 32 1 0.1226 4.1820 4.8347 33 1 -0.6431 5.3318 6.8689 34 1 -2.8120 6.4922 6.8901 35 1 -4.2245 6.5207 4.8765 36 1 -3.4758 5.3880 2.8265 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188027944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:05 Heat of formation + Delta-G solvation = -57.032732 kcal Electronic energy + Delta-G solvation = -18387.232859 eV Core-core repulsion = 15415.416401 eV Total energy + Delta-G solvation = -2971.816458 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.72658 -39.19337 -36.05397 -34.00838 -33.42978 -31.33740 -31.18953 -29.73525 -27.31118 -24.70202 -23.15899 -22.74416 -21.53148 -19.86801 -18.93979 -17.61656 -16.82293 -16.50487 -15.65300 -15.28786 -15.15106 -14.81439 -14.36382 -13.65724 -13.56107 -13.18710 -13.06940 -12.78456 -12.29570 -12.00134 -11.47399 -11.46366 -11.28312 -11.19023 -11.04833 -10.93222 -10.63872 -10.39631 -10.27398 -9.79602 -9.63974 -9.32108 -9.16478 -8.75408 -8.43293 -8.33320 -6.15570 -4.22793 0.47700 1.20968 1.97820 3.27833 3.31215 3.33595 3.50259 3.73033 3.82239 4.34798 4.62500 4.73994 4.76417 4.93206 5.16081 5.22160 5.25388 5.29209 5.70027 5.79050 5.80902 6.01238 6.19549 6.25824 6.28949 6.31961 6.44397 6.53201 6.55852 6.75973 6.90791 6.99639 7.20316 7.28127 7.64400 7.77337 7.97414 8.19149 8.67097 8.93632 9.42572 10.91196 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.035487 B = 0.003796 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.831643 B = 7374.033019 C = 7841.970855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.217 3.783 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.344 6.344 14 C 0.481 3.519 15 O -0.517 6.517 16 C -0.165 4.165 17 C -0.041 4.041 18 C -0.065 4.065 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.099 4.099 24 H 0.053 0.947 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.108 0.892 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.534 8.494 13.701 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.163 3.837 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.260 6.260 14 C 0.327 3.673 15 O -0.409 6.409 16 C -0.184 4.184 17 C -0.060 4.060 18 C -0.065 4.065 19 C -0.121 4.121 20 C -0.140 4.140 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.117 4.117 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.126 0.874 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.666 8.360 13.194 18.914 hybrid contribution 0.904 -0.117 -0.237 0.942 sum -9.762 8.243 12.957 18.197 Atomic orbital electron populations 1.21864 0.98431 0.98966 1.00731 1.22044 0.92591 0.99527 1.03319 1.20277 0.95063 0.88898 0.79422 0.93647 1.21024 0.89677 1.39010 1.06248 0.91412 1.24888 0.99195 0.94773 0.95080 1.69883 1.35434 1.37789 1.09456 0.86347 0.83956 0.78468 0.77441 1.19947 1.21053 1.20005 1.86173 1.33833 1.62304 1.43641 1.21050 0.81100 0.77218 0.87970 1.90810 1.55454 1.58893 1.35727 1.22490 0.97808 1.00577 0.97508 1.22356 0.95093 0.92211 0.96296 1.19049 0.95120 0.98901 0.93447 1.21545 0.99732 0.98506 0.92358 1.21118 0.96588 0.98031 0.98233 1.21289 0.94683 0.99115 0.98309 1.21092 1.00011 0.99971 0.93139 1.21397 0.95217 0.96563 0.98500 0.92809 0.94848 0.94970 0.87413 0.94026 0.92373 0.84623 0.84505 0.85109 0.85723 0.86051 0.85825 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.55 37.16 0.32 -2.88 16 2 C -0.14 -3.46 5.48 -26.73 -0.15 -3.61 16 3 C 0.22 5.86 2.22 -27.88 -0.06 5.80 16 4 H 0.05 1.36 7.11 -51.93 -0.37 0.99 16 5 C -0.52 -14.79 8.89 -34.44 -0.31 -15.10 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.32 11.29 55.43 0.63 -24.70 16 9 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 O -0.34 -8.35 9.70 -41.06 -0.40 -8.75 16 14 C 0.48 10.25 6.29 33.94 0.21 10.46 16 15 O -0.52 -12.08 13.36 -19.35 -0.26 -12.34 16 16 C -0.17 -2.63 9.54 -37.55 -0.36 -2.99 16 17 C -0.04 -0.57 9.46 -37.13 -0.35 -0.92 16 18 C -0.07 -0.77 5.87 -105.06 -0.62 -1.38 16 19 C -0.10 -1.11 9.41 -39.10 -0.37 -1.48 16 20 C -0.12 -1.11 10.03 -39.65 -0.40 -1.51 16 21 C -0.12 -0.98 10.04 -39.46 -0.40 -1.37 16 22 C -0.12 -1.08 10.03 -39.65 -0.40 -1.48 16 23 C -0.10 -1.00 9.80 -39.11 -0.38 -1.38 16 24 H 0.05 1.26 7.75 -51.93 -0.40 0.86 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.69 6.05 -51.93 -0.31 0.38 16 27 H 0.11 2.94 5.95 -51.93 -0.31 2.64 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.14 1.84 6.08 -52.49 -0.32 1.52 16 31 H 0.14 1.91 7.52 -52.49 -0.39 1.51 16 32 H 0.13 1.29 6.17 -52.48 -0.32 0.97 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -31.01 307.36 -8.28 -39.30 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.51 Total: 1.89 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -3.35 Total: -16.20 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.63 Total: -24.70 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.66 Total: -21.09 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.01 -8.28 -39.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188027944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.738 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds