Wall clock time and date at job start Mon Mar 30 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47271 * 59.99842 * 9 7 5 11 11 H 1.48496 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47134 * 299.99873 * 9 7 5 13 13 O 1.42905 * 109.47264 * 64.99692 * 3 2 1 14 14 C 1.34908 * 116.99710 * 270.00403 * 13 3 2 15 15 O 1.21618 * 120.00244 * 359.97438 * 14 13 3 16 16 C 1.46236 * 119.99571 * 179.97438 * 14 13 3 17 17 C 1.34920 * 119.99788 * 179.97438 * 16 14 13 18 18 C 1.47178 * 119.99953 * 180.02562 * 17 16 14 19 19 C 1.39854 * 120.16903 * 359.72890 * 18 17 16 20 20 C 1.37891 * 119.82261 * 179.72144 * 19 18 17 21 21 C 1.38408 * 120.16628 * 0.55252 * 20 19 18 22 22 C 1.38397 * 120.35455 * 359.72042 * 21 20 19 23 23 C 1.37891 * 120.16949 * 359.97438 * 22 21 20 24 24 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 25 25 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 27 27 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 28 28 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 29 29 H 0.97001 * 119.99839 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.00260 * 0.02562 * 16 14 13 31 31 H 1.07994 * 119.99812 * 359.97438 * 17 16 14 32 32 H 1.08007 * 120.08964 * 359.97287 * 19 18 17 33 33 H 1.07998 * 119.91104 * 180.29317 * 20 19 18 34 34 H 1.08001 * 119.81931 * 179.74290 * 21 20 19 35 35 H 1.07998 * 119.91999 * 180.02562 * 22 21 20 36 36 H 1.08002 * 120.08433 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0051 0.8811 -1.3816 10 1 6.5976 0.1472 -0.2347 11 1 6.3979 0.2176 -2.6507 12 1 6.4996 2.2813 -1.3820 13 8 1.6620 2.0814 1.2210 14 6 0.4728 2.7184 1.2363 15 8 -0.2233 2.7307 0.2391 16 6 0.0208 3.3940 2.4519 17 6 -1.1682 4.0314 2.4670 18 6 -1.6229 4.7119 3.6903 19 6 -0.8278 4.6951 4.8407 20 6 -1.2581 5.3398 5.9811 21 6 -2.4785 5.9926 5.9926 22 6 -3.2736 6.0089 4.8599 23 6 -2.8544 5.3741 3.7098 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8294 -0.0613 -2.9497 30 1 0.6391 3.3834 3.3373 31 1 -1.7859 4.0430 1.5813 32 1 0.1226 4.1820 4.8347 33 1 -0.6431 5.3318 6.8689 34 1 -2.8120 6.4922 6.8901 35 1 -4.2245 6.5207 4.8765 36 1 -3.4758 5.3880 2.8265 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188027944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:05 Heat of formation + Delta-G solvation = -72.907702 kcal Electronic energy + Delta-G solvation = -18387.921249 eV Core-core repulsion = 15415.416401 eV Total energy + Delta-G solvation = -2972.504848 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41294 -40.07151 -37.85364 -35.48287 -35.11521 -33.34319 -31.92121 -30.76946 -29.31267 -26.10712 -24.91063 -23.61877 -22.80943 -21.65803 -20.35545 -19.02639 -18.68000 -17.72882 -17.22829 -17.04825 -16.46678 -16.05836 -15.60166 -14.89292 -14.83638 -14.45857 -14.25531 -14.12676 -13.86248 -13.49666 -13.34602 -13.16258 -13.02848 -12.81786 -12.56480 -12.19140 -12.14205 -11.84833 -11.78016 -11.47919 -11.41395 -11.32045 -10.80489 -10.51543 -9.88402 -9.29669 -8.27119 -6.44561 -0.56133 0.49336 0.91491 1.41200 1.45249 1.53303 2.07673 2.11102 2.44422 2.95458 3.02060 3.69910 3.82316 4.06525 4.16171 4.18899 4.35196 4.36150 4.38685 4.50979 4.54713 4.56029 4.82650 4.95307 4.98301 5.06889 5.15990 5.20911 5.23533 5.38093 5.50511 5.55293 5.58556 5.64413 5.67100 5.97871 6.04561 6.13213 6.60263 7.01333 7.27932 8.79621 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.035487 B = 0.003796 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.831643 B = 7374.033019 C = 7841.970855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.553 4.553 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.982 3.018 10 H -0.263 1.263 11 H -0.276 1.276 12 H -0.269 1.269 13 O -0.355 6.355 14 C 0.477 3.523 15 O -0.549 6.549 16 C -0.199 4.199 17 C 0.001 3.999 18 C -0.098 4.098 19 C -0.110 4.110 20 C -0.130 4.130 21 C -0.106 4.106 22 C -0.129 4.129 23 C -0.101 4.101 24 H 0.035 0.965 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.271 0.729 30 H 0.158 0.842 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 9.523 15.980 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.167 3.833 4 H 0.022 0.978 5 C -0.591 4.591 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.805 3.195 10 H -0.188 1.188 11 H -0.201 1.201 12 H -0.194 1.194 13 O -0.271 6.271 14 C 0.325 3.675 15 O -0.443 6.443 16 C -0.218 4.218 17 C -0.017 4.017 18 C -0.098 4.098 19 C -0.128 4.128 20 C -0.147 4.147 21 C -0.124 4.124 22 C -0.146 4.146 23 C -0.119 4.119 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.227 9.397 15.492 21.315 hybrid contribution 0.867 -0.281 -0.826 1.230 sum -10.360 9.115 14.666 20.138 Atomic orbital electron populations 1.21711 0.96313 1.00586 1.00040 1.21895 0.94462 0.98252 1.02295 1.19976 0.94649 0.89436 0.79260 0.97796 1.21336 0.90527 1.40172 1.07030 0.91664 1.25832 1.04382 0.93792 0.94294 1.70011 1.37555 1.37822 1.09825 0.85249 0.77527 0.78787 0.77936 1.18811 1.20122 1.19396 1.86151 1.35754 1.63076 1.42151 1.21939 0.79717 0.76439 0.89364 1.90781 1.55922 1.60245 1.37327 1.22294 0.99752 1.03598 0.96142 1.22529 0.93318 0.88958 0.96926 1.19025 0.96712 1.01074 0.92953 1.21733 0.99811 0.98590 0.92661 1.21447 0.97326 0.97575 0.98386 1.21746 0.93882 0.97537 0.99202 1.21458 1.01148 0.99510 0.92534 1.21653 0.94568 0.95920 0.99741 0.94544 0.91917 0.94572 0.89562 0.93644 0.92013 0.82484 0.85059 0.84854 0.83485 0.83082 0.83137 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.91 8.55 71.98 0.62 -5.30 16 2 C -0.13 -6.86 5.48 30.59 0.17 -6.69 16 3 C 0.22 12.52 2.22 29.85 0.07 12.59 16 4 H 0.00 0.27 7.11 -2.39 -0.02 0.25 16 5 C -0.55 -32.39 8.89 25.60 0.23 -32.16 16 6 H 0.07 3.74 7.81 -2.91 -0.02 3.71 16 7 C 0.02 0.95 5.29 84.66 0.45 1.39 16 8 N -0.91 -53.46 11.29 21.45 0.24 -53.22 16 9 Si 0.98 43.65 29.54 68.60 2.03 45.68 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 O -0.36 -18.03 9.70 -58.23 -0.56 -18.59 16 14 C 0.48 21.21 6.29 69.90 0.44 21.65 16 15 O -0.55 -26.99 13.36 19.45 0.26 -26.73 16 16 C -0.20 -6.48 9.54 23.59 0.22 -6.25 16 17 C 0.00 0.03 9.46 23.86 0.23 0.26 16 18 C -0.10 -2.17 5.87 -20.15 -0.12 -2.28 16 19 C -0.11 -2.17 9.41 22.58 0.21 -1.96 16 20 C -0.13 -1.96 10.03 22.23 0.22 -1.74 16 21 C -0.11 -1.36 10.04 22.35 0.22 -1.14 16 22 C -0.13 -1.78 10.03 22.23 0.22 -1.56 16 23 C -0.10 -1.82 9.80 22.58 0.22 -1.59 16 24 H 0.04 1.76 7.75 -2.38 -0.02 1.74 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.04 1.59 6.05 -2.39 -0.01 1.58 16 27 H 0.09 4.89 5.95 -2.38 -0.01 4.88 16 28 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.16 4.29 6.08 -2.91 -0.02 4.27 16 31 H 0.13 3.71 7.52 -2.91 -0.02 3.69 16 32 H 0.13 2.46 6.17 -2.91 -0.02 2.45 16 33 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 35 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -69.52 307.36 6.44 -63.08 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 1.07 Total: 14.57 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 3.40 Total: -24.79 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.24 Total: -53.22 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -0.30 Total: -45.32 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -69.52 6.44 -63.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188027944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.825 kcal (2) G-P(sol) polarization free energy of solvation -69.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds