Wall clock time and date at job start Mon Mar 30 2020 06:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47195 * 270.00332 * 3 2 1 5 5 H 1.48506 * 109.46793 * 30.00074 * 3 2 1 6 6 H 1.48493 * 109.47412 * 149.99688 * 3 2 1 7 7 C 1.37878 * 120.00538 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99817 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00040 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46689 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47132 * 180.02562 * 10 9 7 12 12 C 1.46331 * 110.99768 * 47.73259 * 11 10 9 13 13 C 1.53582 * 109.59223 * 183.07960 * 12 11 10 14 14 C 1.51857 * 106.68751 * 297.67249 * 13 12 11 15 15 N 1.29445 * 121.82694 * 219.07844 * 14 13 12 16 16 O 1.41599 * 119.99528 * 172.08559 * 15 14 13 17 17 C 1.48055 * 116.34456 * 39.06014 * 14 13 12 18 18 C 1.39373 * 120.11482 * 170.55766 * 17 14 13 19 19 C 1.37961 * 119.75411 * 179.63597 * 18 17 14 20 20 C 1.38514 * 120.05720 * 359.97402 * 19 18 17 21 21 C 1.37936 * 120.64557 * 0.20560 * 20 19 18 22 22 C 1.38716 * 111.00275 * 175.59771 * 11 10 9 23 23 H 0.96994 * 120.00512 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.46665 * 60.00699 * 9 7 2 25 25 H 1.08993 * 109.47511 * 300.00594 * 9 7 2 26 26 H 1.08999 * 109.47700 * 60.00501 * 10 9 7 27 27 H 1.09003 * 109.47308 * 299.99797 * 10 9 7 28 28 H 1.08999 * 109.45246 * 63.04133 * 12 11 10 29 29 H 1.08997 * 109.42906 * 303.10412 * 12 11 10 30 30 H 1.09004 * 110.00528 * 178.38056 * 13 12 11 31 31 H 1.08995 * 110.00397 * 56.97430 * 13 12 11 32 32 H 0.96701 * 113.99507 * 180.02562 * 16 15 14 33 33 H 1.08003 * 120.12184 * 359.65728 * 18 17 14 34 34 H 1.08002 * 119.96930 * 179.97438 * 19 18 17 35 35 H 1.07996 * 119.67956 * 180.12815 * 20 19 18 36 36 H 1.08009 * 119.87977 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5117 -1.1939 0.0000 10 6 4.0217 -2.6363 0.0001 11 7 5.4907 -2.6363 0.0001 12 6 6.0150 -1.7174 1.0110 13 6 7.5484 -1.6847 0.9315 14 6 8.0315 -3.0891 1.2480 15 7 9.0886 -3.3022 1.9640 16 8 9.4110 -4.6180 2.3762 17 6 7.2270 -4.2013 0.6931 18 6 7.7003 -5.5103 0.7647 19 6 6.9411 -6.5418 0.2521 20 6 5.7130 -6.2761 -0.3309 21 6 5.2372 -4.9839 -0.4100 22 6 5.9879 -3.9275 0.0996 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6795 0.8895 25 1 3.8747 -0.6806 -0.8904 26 1 3.6581 -3.1504 -0.8897 27 1 3.6587 -3.1500 0.8903 28 1 5.7100 -2.0550 2.0015 29 1 5.6208 -0.7172 0.8312 30 1 7.9448 -0.9803 1.6628 31 1 7.8637 -1.3990 -0.0720 32 1 10.2173 -4.6774 2.9068 33 1 8.6577 -5.7163 1.2202 34 1 7.3047 -7.5574 0.3053 35 1 5.1228 -7.0885 -0.7284 36 1 4.2776 -4.7908 -0.8668 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217220019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:44 Heat of formation + Delta-G solvation = 25.849840 kcal Electronic energy + Delta-G solvation = -19182.070987 eV Core-core repulsion = 16246.141339 eV Total energy + Delta-G solvation = -2935.929649 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.62593 -38.38865 -37.87533 -35.75049 -34.86785 -32.52200 -31.69390 -31.26145 -29.49434 -26.34889 -24.96233 -24.14676 -22.95435 -21.28857 -20.12549 -19.31828 -18.82348 -17.47147 -17.17220 -16.80317 -16.37829 -16.13776 -15.81281 -15.28177 -14.95469 -14.72630 -14.58711 -14.18752 -14.03248 -13.78806 -13.30346 -13.17538 -12.82389 -12.69849 -12.49930 -12.19477 -12.08134 -11.88554 -11.68911 -11.35263 -11.06944 -10.82651 -10.71723 -10.67304 -9.63048 -8.64163 -8.28493 -6.34047 -0.16431 0.46353 1.30509 1.40413 1.41153 1.52272 2.05435 2.37831 2.53613 2.99320 3.07364 3.37456 3.81543 3.84750 3.92157 4.18237 4.24097 4.35150 4.40412 4.46044 4.52035 4.58649 4.73376 4.77742 4.83138 4.97944 5.09570 5.11698 5.23036 5.39960 5.47621 5.57939 5.60268 5.79938 5.88984 6.10454 6.24073 6.32793 6.73436 6.78392 7.30699 8.87960 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.027214 B = 0.005451 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.622275 B = 5135.098104 C = 6005.560159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.237 1.237 7 C -0.533 4.533 8 H 0.033 0.967 9 C -0.009 4.009 10 C 0.085 3.915 11 N -0.499 5.499 12 C 0.055 3.945 13 C -0.056 4.056 14 C 0.172 3.828 15 N -0.349 5.349 16 O -0.408 6.408 17 C -0.175 4.175 18 C -0.070 4.070 19 C -0.171 4.171 20 C -0.068 4.068 21 C -0.196 4.196 22 C 0.151 3.849 23 H 0.267 0.733 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.077 0.923 27 H 0.033 0.967 28 H 0.044 0.956 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.410 0.590 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.112 -8.127 2.391 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.160 1.160 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.046 4.046 10 C -0.040 4.040 11 N -0.210 5.210 12 C -0.071 4.071 13 C -0.094 4.094 14 C -0.016 4.016 15 N -0.091 5.091 16 O -0.319 6.319 17 C -0.181 4.181 18 C -0.090 4.090 19 C -0.190 4.190 20 C -0.087 4.087 21 C -0.217 4.217 22 C 0.048 3.952 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.262 0.738 33 H 0.176 0.824 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.376 -7.450 2.142 20.869 hybrid contribution -0.732 -0.188 0.434 0.872 sum 18.644 -7.638 2.577 20.312 Atomic orbital electron populations 1.70058 1.08434 1.28263 1.52324 1.25971 0.95550 1.03523 0.93888 0.85682 0.79851 0.78024 0.79276 1.19280 1.21338 1.15992 1.21309 0.91598 0.93309 1.50969 0.94865 1.19648 0.94017 0.93308 0.97672 1.22062 0.82075 0.99131 1.00689 1.57438 1.09481 1.07052 1.47011 1.22369 0.94288 0.98178 0.92272 1.21022 0.93229 0.89776 1.05371 1.24288 0.89446 0.96604 0.91308 1.76503 1.15637 1.01914 1.15037 1.88388 1.50341 1.20283 1.72902 1.19341 0.96661 0.94692 1.07415 1.22104 1.00522 0.90794 0.95535 1.21352 0.95466 1.00065 1.02148 1.21421 0.95703 0.96108 0.95510 1.21329 1.01443 0.92770 1.06122 1.19177 0.93648 0.88599 0.93790 0.92452 0.94813 0.95198 0.90463 0.94856 0.93778 0.87075 0.86156 0.87085 0.73754 0.82429 0.83272 0.83339 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 2 C 0.01 0.44 5.47 84.66 0.46 0.91 16 3 Si 0.95 42.25 27.47 68.60 1.88 44.13 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16 7 C -0.53 -29.64 9.66 25.60 0.25 -29.40 16 8 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 9 C -0.01 -0.39 3.36 29.85 0.10 -0.29 16 10 C 0.09 3.28 4.15 86.30 0.36 3.64 16 11 N -0.50 -16.60 4.59 -694.99 -3.19 -19.79 16 12 C 0.06 1.60 4.79 86.61 0.41 2.01 16 13 C -0.06 -1.32 6.44 30.41 0.20 -1.12 16 14 C 0.17 4.77 6.86 45.89 0.31 5.08 16 15 N -0.35 -9.08 12.17 -41.65 -0.51 -9.59 16 16 O -0.41 -8.84 10.95 -38.78 -0.42 -9.26 16 17 C -0.18 -5.29 5.80 -19.95 -0.12 -5.41 16 18 C -0.07 -1.88 9.08 22.48 0.20 -1.67 16 19 C -0.17 -4.00 10.04 22.27 0.22 -3.78 16 20 C -0.07 -1.67 10.01 22.26 0.22 -1.45 16 21 C -0.20 -5.89 9.04 22.44 0.20 -5.68 16 22 C 0.15 4.87 5.92 38.75 0.23 5.10 16 23 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 24 H 0.03 1.41 5.31 -2.39 -0.01 1.40 16 25 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 26 H 0.08 2.99 6.50 -2.39 -0.02 2.98 16 27 H 0.03 1.34 8.11 -2.39 -0.02 1.32 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.11 3.17 5.98 -2.39 -0.01 3.16 16 30 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.41 4.71 9.28 -62.24 -0.58 4.13 16 33 H 0.16 3.90 4.87 1.34 0.01 3.91 16 34 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.13 3.90 5.98 -2.91 -0.02 3.89 16 Total: -1.00 -68.18 290.97 1.62 -66.55 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.50 Total: 18.23 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.06 Total: -32.07 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -3.39 Total: -87.59 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.42 Total: -9.26 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.13 kcal Total: -68.18 1.62 -66.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217220019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.402 kcal (2) G-P(sol) polarization free energy of solvation -68.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds