Wall clock time and date at job start Mon Mar 30 2020 06:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38381 * 119.92234 * 2 1 4 4 C 1.38350 * 120.30842 * 180.02562 * 3 2 1 5 5 C 1.37959 * 120.15161 * 359.97438 * 4 3 2 6 6 C 1.39641 * 119.84609 * 359.97438 * 5 4 3 7 7 C 1.47559 * 120.15208 * 180.02562 * 6 5 4 8 8 C 1.33573 * 120.00273 * 0.02562 * 7 6 5 9 9 N 1.38717 * 119.99984 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99887 * 179.72094 * 9 8 7 11 11 O 1.21593 * 119.99949 * 0.27948 * 10 9 8 12 12 N 1.34777 * 120.00128 * 180.27819 * 10 9 8 13 13 C 1.46499 * 120.00065 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47138 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00213 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00019 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47496 * 89.99791 * 18 16 14 20 20 H 1.48494 * 109.47146 * 210.00132 * 18 16 14 21 21 H 1.48504 * 109.46915 * 329.99781 * 18 16 14 22 22 C 1.37916 * 119.91669 * 180.25033 * 2 1 3 23 23 H 1.09000 * 109.46656 * 90.00260 * 1 2 3 24 24 H 1.08992 * 109.47145 * 210.00254 * 1 2 3 25 25 H 1.09000 * 109.46591 * 330.00559 * 1 2 3 26 26 H 1.07995 * 119.84753 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.92567 * 179.97438 * 4 3 2 28 28 H 1.08005 * 120.07788 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.99519 * 179.97438 * 7 6 5 30 30 H 1.08001 * 120.00208 * 359.97438 * 8 7 6 31 31 H 0.97001 * 120.00325 * 0.02562 * 9 8 7 32 32 H 0.97000 * 119.99549 * 359.97438 * 12 10 9 33 33 H 1.09000 * 109.47602 * 299.99940 * 13 12 10 34 34 H 1.09006 * 109.46868 * 59.99976 * 13 12 10 35 35 H 0.97010 * 119.99768 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.08349 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2087 -0.0005 5 6 4.2818 0.0204 -0.0005 6 6 3.5917 -1.1935 0.0005 7 6 4.3347 -2.4684 0.0011 8 6 5.6704 -2.4631 0.0011 9 7 6.3688 -3.6616 0.0022 10 6 7.7165 -3.6562 -0.0035 11 8 8.3202 -2.6008 -0.0044 12 7 8.3951 -4.8207 -0.0081 13 6 9.8600 -4.8148 -0.0137 14 6 10.3681 -6.2337 -0.0175 15 1 9.6696 -7.0574 -0.0163 16 6 11.7246 -6.4802 -0.0235 17 7 12.1679 -7.7183 -0.0273 18 14 12.9328 -5.0555 -0.0263 19 1 13.2588 -4.6801 1.3730 20 1 14.1747 -5.4611 -0.7322 21 1 12.3253 -3.8927 -0.7221 22 6 2.1949 -1.1954 -0.0052 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3632 0.8901 0.5138 26 1 1.6536 2.1324 -0.0004 27 1 4.1133 2.1483 -0.0009 28 1 5.3618 0.0291 -0.0005 29 1 3.7984 -3.4059 0.0024 30 1 6.2067 -1.5257 0.0003 31 1 5.8872 -4.5037 0.0026 32 1 7.9134 -5.6627 -0.0070 33 1 10.2180 -4.2980 -0.9042 34 1 10.2247 -4.3011 0.8758 35 1 13.1223 -7.8917 -0.0312 36 1 1.6549 -2.1307 -0.0097 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217920107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:49 Heat of formation + Delta-G solvation = -2.240354 kcal Electronic energy + Delta-G solvation = -17593.997242 eV Core-core repulsion = 14656.849511 eV Total energy + Delta-G solvation = -2937.147731 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.98706 -39.29879 -36.04923 -34.42659 -33.41399 -32.45046 -31.93618 -29.21270 -27.62914 -26.83705 -23.35588 -22.19073 -21.95603 -20.69725 -19.84421 -18.44404 -16.87735 -16.45798 -16.33704 -15.18966 -15.15280 -14.95396 -14.51727 -14.18611 -13.97270 -13.55329 -13.20873 -13.15989 -12.78092 -12.45169 -12.43229 -12.34643 -12.06846 -11.36079 -11.24662 -11.07859 -10.95819 -10.80969 -10.06551 -9.90395 -9.55591 -9.49402 -8.85607 -8.81155 -8.35975 -7.49111 -6.26904 -4.30083 0.93473 1.32739 2.41397 2.96829 3.23747 3.31219 3.38396 3.60117 3.89841 4.28529 4.58883 4.65404 4.73874 4.90166 5.04734 5.08413 5.16871 5.23046 5.35022 5.37398 5.51484 5.61875 5.86478 5.95495 6.00186 6.10870 6.42268 6.47989 6.55284 6.66388 6.86865 6.98397 6.99269 7.05419 7.20970 7.38704 8.15067 8.45296 8.69810 8.88608 9.32220 10.84815 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.057335 B = 0.002883 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.243909 B = 9708.664141 C =10176.437944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.107 4.107 5 C -0.138 4.138 6 C -0.006 4.006 7 C -0.234 4.234 8 C 0.153 3.847 9 N -0.682 5.682 10 C 0.689 3.311 11 O -0.586 6.586 12 N -0.712 5.712 13 C 0.236 3.764 14 C -0.546 4.546 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.890 5.890 18 Si 0.877 3.123 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.125 4.125 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.153 0.847 31 H 0.404 0.596 32 H 0.396 0.604 33 H 0.027 0.973 34 H 0.022 0.978 35 H 0.269 0.731 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.007 13.012 0.010 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.157 4.157 4 C -0.125 4.125 5 C -0.156 4.156 6 C -0.007 4.007 7 C -0.260 4.260 8 C 0.034 3.966 9 N -0.324 5.324 10 C 0.389 3.611 11 O -0.464 6.464 12 N -0.363 5.363 13 C 0.113 3.887 14 C -0.584 4.584 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.527 5.527 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.143 4.143 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.170 0.830 31 H 0.239 0.761 32 H 0.230 0.770 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.073 13.742 0.007 24.327 hybrid contribution 0.297 -0.280 0.016 0.409 sum -19.776 13.462 0.023 23.924 Atomic orbital electron populations 1.20784 0.91452 1.02593 1.02179 1.19801 0.95830 0.93178 0.99541 1.20983 0.94248 0.97254 1.03238 1.21026 0.94171 0.97922 0.99423 1.21337 1.00007 0.91978 1.02298 1.18663 0.92803 0.92204 0.97057 1.20997 0.92396 0.96517 1.16081 1.21466 0.92193 0.89895 0.93043 1.42866 1.06255 1.08637 1.74671 1.16178 0.80717 0.85644 0.78547 1.90907 1.67495 1.30474 1.57542 1.45481 1.09495 1.05558 1.75790 1.19474 0.73740 0.98426 0.97015 1.21048 0.93244 0.90388 1.53734 0.90190 1.24776 0.98107 0.95902 0.93773 1.69874 1.14865 1.18895 1.49104 0.86810 0.80777 0.82960 0.79117 1.19771 1.20823 1.18434 1.21035 0.93085 0.97436 1.02755 0.91319 0.91633 0.91721 0.86551 0.86200 0.85852 0.86405 0.82990 0.76114 0.77011 0.95519 0.95981 0.92155 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.08 -0.81 5.87 -104.68 -0.61 -1.42 16 3 C -0.14 -1.35 9.69 -39.49 -0.38 -1.73 16 4 C -0.11 -1.11 10.03 -39.64 -0.40 -1.51 16 5 C -0.14 -1.60 9.41 -39.16 -0.37 -1.97 16 6 C -0.01 -0.07 5.87 -105.03 -0.62 -0.69 16 7 C -0.23 -2.68 9.71 -37.42 -0.36 -3.05 16 8 C 0.15 2.02 9.60 -16.07 -0.15 1.86 16 9 N -0.68 -9.48 5.36 -16.21 -0.09 -9.56 16 10 C 0.69 12.97 8.53 -86.92 -0.74 12.23 16 11 O -0.59 -13.24 15.94 5.28 0.08 -13.16 16 12 N -0.71 -13.95 5.55 -66.41 -0.37 -14.32 16 13 C 0.24 5.67 4.50 -5.19 -0.02 5.64 16 14 C -0.55 -14.66 9.83 -34.44 -0.34 -15.00 16 15 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 16 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 17 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 18 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 22 C -0.12 -1.31 9.44 -39.16 -0.37 -1.68 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 25 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.12 1.39 6.17 -52.48 -0.32 1.06 16 29 H 0.12 1.14 8.05 -52.49 -0.42 0.72 16 30 H 0.15 2.16 5.41 -52.49 -0.28 1.87 16 31 H 0.40 4.27 8.68 -40.82 -0.35 3.92 16 32 H 0.40 6.66 8.34 -40.82 -0.34 6.32 16 33 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 34 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -31.91 313.03 -8.26 -40.17 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.60 Total: 6.66 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -4.11 Total: -5.64 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.32 Total: -49.15 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.91 -8.26 -40.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217920107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.931 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds