Wall clock time and date at job start Mon Mar 30 2020 06:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38381 * 119.92234 * 2 1 4 4 C 1.38350 * 120.30842 * 180.02562 * 3 2 1 5 5 C 1.37959 * 120.15161 * 359.97438 * 4 3 2 6 6 C 1.39641 * 119.84609 * 359.97438 * 5 4 3 7 7 C 1.47559 * 120.15208 * 180.02562 * 6 5 4 8 8 C 1.33573 * 120.00273 * 0.02562 * 7 6 5 9 9 N 1.38717 * 119.99984 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99887 * 179.72094 * 9 8 7 11 11 O 1.21593 * 119.99949 * 0.27948 * 10 9 8 12 12 N 1.34777 * 120.00128 * 180.27819 * 10 9 8 13 13 C 1.46499 * 120.00065 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47138 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00213 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00019 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47496 * 89.99791 * 18 16 14 20 20 H 1.48494 * 109.47146 * 210.00132 * 18 16 14 21 21 H 1.48504 * 109.46915 * 329.99781 * 18 16 14 22 22 C 1.37916 * 119.91669 * 180.25033 * 2 1 3 23 23 H 1.09000 * 109.46656 * 90.00260 * 1 2 3 24 24 H 1.08992 * 109.47145 * 210.00254 * 1 2 3 25 25 H 1.09000 * 109.46591 * 330.00559 * 1 2 3 26 26 H 1.07995 * 119.84753 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.92567 * 179.97438 * 4 3 2 28 28 H 1.08005 * 120.07788 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.99519 * 179.97438 * 7 6 5 30 30 H 1.08001 * 120.00208 * 359.97438 * 8 7 6 31 31 H 0.97001 * 120.00325 * 0.02562 * 9 8 7 32 32 H 0.97000 * 119.99549 * 359.97438 * 12 10 9 33 33 H 1.09000 * 109.47602 * 299.99940 * 13 12 10 34 34 H 1.09006 * 109.46868 * 59.99976 * 13 12 10 35 35 H 0.97010 * 119.99768 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.08349 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2087 -0.0005 5 6 4.2818 0.0204 -0.0005 6 6 3.5917 -1.1935 0.0005 7 6 4.3347 -2.4684 0.0011 8 6 5.6704 -2.4631 0.0011 9 7 6.3688 -3.6616 0.0022 10 6 7.7165 -3.6562 -0.0035 11 8 8.3202 -2.6008 -0.0044 12 7 8.3951 -4.8207 -0.0081 13 6 9.8600 -4.8148 -0.0137 14 6 10.3681 -6.2337 -0.0175 15 1 9.6696 -7.0574 -0.0163 16 6 11.7246 -6.4802 -0.0235 17 7 12.1679 -7.7183 -0.0273 18 14 12.9328 -5.0555 -0.0263 19 1 13.2588 -4.6801 1.3730 20 1 14.1747 -5.4611 -0.7322 21 1 12.3253 -3.8927 -0.7221 22 6 2.1949 -1.1954 -0.0052 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3632 0.8901 0.5138 26 1 1.6536 2.1324 -0.0004 27 1 4.1133 2.1483 -0.0009 28 1 5.3618 0.0291 -0.0005 29 1 3.7984 -3.4059 0.0024 30 1 6.2067 -1.5257 0.0003 31 1 5.8872 -4.5037 0.0026 32 1 7.9134 -5.6627 -0.0070 33 1 10.2180 -4.2980 -0.9042 34 1 10.2247 -4.3011 0.8758 35 1 13.1223 -7.8917 -0.0312 36 1 1.6549 -2.1307 -0.0097 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217920107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:48 Heat of formation + Delta-G solvation = -22.721436 kcal Electronic energy + Delta-G solvation = -17594.885368 eV Core-core repulsion = 14656.849511 eV Total energy + Delta-G solvation = -2938.035857 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37544 -40.14844 -37.28605 -36.16933 -34.60855 -34.13431 -32.80059 -30.53602 -29.13441 -27.56518 -24.76053 -23.43645 -22.99740 -22.12470 -20.93882 -19.89004 -18.45693 -17.81422 -17.33451 -16.70459 -16.60021 -16.11971 -15.73550 -15.38041 -15.08501 -14.63429 -14.50956 -14.43197 -14.18594 -13.95524 -13.25691 -13.11358 -13.06599 -12.84834 -12.75410 -12.44671 -12.02746 -11.93749 -11.74849 -11.68106 -11.51586 -10.93030 -10.47291 -10.03326 -9.58255 -8.49028 -8.40484 -6.47935 0.03148 0.53543 1.33883 1.36119 1.41337 1.48776 1.64917 2.24308 2.28334 2.95177 3.04489 3.27372 3.85166 4.05046 4.10336 4.18390 4.35082 4.52922 4.57206 4.68210 4.76990 4.88791 4.95974 4.99289 5.01282 5.10379 5.19774 5.23831 5.36827 5.39690 5.57325 5.64986 5.75891 5.90840 5.94890 6.17823 6.21553 6.53926 7.00247 7.16999 7.43402 8.74002 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.057335 B = 0.002883 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.243909 B = 9708.664141 C =10176.437944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.119 4.119 5 C -0.154 4.154 6 C -0.035 4.035 7 C -0.196 4.196 8 C 0.117 3.883 9 N -0.663 5.663 10 C 0.693 3.307 11 O -0.627 6.627 12 N -0.711 5.711 13 C 0.248 3.752 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.027 3.973 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.127 4.127 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.421 0.579 32 H 0.410 0.590 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.273 0.727 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.195 14.203 0.048 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.157 4.157 4 C -0.136 4.136 5 C -0.172 4.172 6 C -0.036 4.036 7 C -0.221 4.221 8 C 0.001 3.999 9 N -0.307 5.307 10 C 0.393 3.607 11 O -0.508 6.508 12 N -0.364 5.364 13 C 0.124 3.876 14 C -0.585 4.585 15 H 0.079 0.921 16 C -0.174 4.174 17 N -0.569 5.569 18 Si 0.761 3.239 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.146 4.146 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.157 0.843 27 H 0.153 0.847 28 H 0.135 0.865 29 H 0.159 0.841 30 H 0.154 0.846 31 H 0.260 0.740 32 H 0.246 0.754 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.347 14.923 0.047 26.872 hybrid contribution 0.720 -0.578 0.002 0.923 sum -21.627 14.346 0.049 25.952 Atomic orbital electron populations 1.20833 0.89318 1.03640 1.03058 1.20201 0.97498 0.92857 0.98565 1.21348 0.94099 0.98441 1.01857 1.21292 0.94875 0.98162 0.99318 1.21479 1.00024 0.92836 1.02903 1.18847 0.93653 0.92161 0.98903 1.21237 0.91619 0.97539 1.11695 1.21349 0.92698 0.89062 0.96802 1.42437 1.04280 1.09824 1.74191 1.16192 0.82071 0.84479 0.77963 1.90874 1.68875 1.31742 1.59356 1.45135 1.08041 1.06711 1.76492 1.19058 0.76294 0.96231 0.96005 1.21247 0.93174 0.91256 1.52835 0.92068 1.25575 1.00034 0.98181 0.93560 1.69975 1.15551 1.20803 1.50526 0.85862 0.78740 0.79850 0.79484 1.18969 1.19879 1.18308 1.21313 0.92602 0.98719 1.01929 0.90406 0.90786 0.90580 0.84314 0.84708 0.86523 0.84073 0.84584 0.74040 0.75447 0.96675 0.96787 0.91796 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.24 0.71 -0.47 16 2 C -0.09 -1.53 5.87 -19.90 -0.12 -1.65 16 3 C -0.14 -2.38 9.69 22.33 0.22 -2.16 16 4 C -0.12 -2.30 10.03 22.23 0.22 -2.08 16 5 C -0.15 -3.51 9.41 22.54 0.21 -3.30 16 6 C -0.03 -0.76 5.87 -20.13 -0.12 -0.88 16 7 C -0.20 -4.17 9.71 23.67 0.23 -3.94 16 8 C 0.12 3.05 9.60 82.54 0.79 3.85 16 9 N -0.66 -17.89 5.36 -323.46 -1.74 -19.62 16 10 C 0.69 26.02 8.53 179.05 1.53 27.55 16 11 O -0.63 -28.77 15.94 -4.01 -0.06 -28.83 16 12 N -0.71 -27.78 5.55 -482.28 -2.68 -30.46 16 13 C 0.25 11.97 4.50 85.63 0.38 12.36 16 14 C -0.55 -29.66 9.83 25.60 0.25 -29.41 16 15 H 0.06 3.47 7.84 -2.91 -0.02 3.44 16 16 C 0.03 1.51 5.47 84.66 0.46 1.97 16 17 N -0.93 -54.91 13.96 21.45 0.30 -54.61 16 18 Si 0.94 43.49 27.47 68.60 1.88 45.37 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.26 -11.89 6.54 99.48 0.65 -11.24 16 22 C -0.13 -2.37 9.44 22.54 0.21 -2.16 16 23 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 25 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 26 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 27 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.12 2.73 6.17 -2.91 -0.02 2.71 16 29 H 0.14 2.30 8.05 -2.91 -0.02 2.27 16 30 H 0.14 4.00 5.41 -2.91 -0.02 3.99 16 31 H 0.42 8.20 8.68 -92.71 -0.80 7.39 16 32 H 0.41 13.60 8.34 -92.71 -0.77 12.83 16 33 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 34 H 0.01 0.71 7.57 -2.38 -0.02 0.69 16 35 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 36 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -68.61 313.03 2.17 -66.44 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.53 Total: 22.04 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 4.99 Total: -0.33 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -4.11 Total: -104.69 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.06 Total: -28.83 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -68.61 2.17 -66.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217920107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.717 kcal (2) G-P(sol) polarization free energy of solvation -68.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds