Wall clock time and date at job start Mon Mar 30 2020 06:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46943 * 2 1 4 4 C 1.50699 * 109.47215 * 179.97438 * 3 2 1 5 5 N 1.30446 * 119.99840 * 274.99871 * 4 3 2 6 6 N 1.40091 * 120.00260 * 359.97438 * 5 4 3 7 7 C 1.34775 * 120.00196 * 179.97438 * 6 5 4 8 8 O 1.21915 * 120.00271 * 0.02562 * 7 6 5 9 9 C 1.41055 * 120.00397 * 180.02562 * 7 6 5 10 10 H 1.08009 * 119.99915 * 353.74098 * 9 7 6 11 11 C 1.40226 * 120.00371 * 173.73900 * 9 7 6 12 12 N 1.30588 * 119.99657 * 6.26708 * 11 9 7 13 13 Si 1.86800 * 120.00138 * 186.27134 * 11 9 7 14 14 H 1.48492 * 109.47378 * 94.98103 * 13 11 9 15 15 H 1.48495 * 109.46975 * 214.98802 * 13 11 9 16 16 H 1.48506 * 109.46723 * 334.98176 * 13 11 9 17 17 C 1.47048 * 120.00040 * 94.99553 * 4 3 2 18 18 C 1.40011 * 120.18505 * 180.02562 * 17 4 3 19 19 C 1.37817 * 119.81454 * 179.97438 * 18 17 4 20 20 C 1.38472 * 120.18680 * 359.97438 * 19 18 17 21 21 C 1.38475 * 120.36997 * 0.04482 * 20 19 18 22 22 C 1.37829 * 120.18115 * 359.95175 * 21 20 19 23 23 H 1.08997 * 109.47038 * 60.00668 * 1 2 3 24 24 H 1.09006 * 109.46545 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46886 * 299.99837 * 1 2 3 26 26 H 1.08997 * 109.47430 * 239.99392 * 2 1 3 27 27 H 1.09005 * 109.46885 * 119.99103 * 2 1 3 28 28 H 1.08997 * 109.47554 * 59.99468 * 3 2 1 29 29 H 1.09000 * 109.47158 * 299.99724 * 3 2 1 30 30 H 0.97002 * 120.00005 * 0.02562 * 6 5 4 31 31 H 0.97005 * 119.99599 * 179.97438 * 12 11 9 32 32 H 1.08002 * 120.08732 * 359.70553 * 18 17 4 33 33 H 1.08007 * 119.90866 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.81530 * 180.02562 * 20 19 18 35 35 H 1.07991 * 119.91060 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.09502 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.1988 1.3443 1.1263 6 7 3.4978 1.2393 2.3347 7 6 4.1712 1.1373 3.4977 8 8 5.3903 1.1369 3.4983 9 6 3.4655 1.0310 4.7144 10 1 2.3902 1.1327 4.7257 11 6 4.1598 0.7932 5.9093 12 7 5.4656 0.7920 5.9165 13 14 3.2167 0.4782 7.4907 14 1 3.0720 -0.9851 7.6977 15 1 3.9568 1.0692 8.6344 16 1 1.8715 1.1004 7.3971 17 6 4.2828 1.5533 -1.2677 18 6 5.6829 1.5532 -1.2717 19 6 6.3648 1.6569 -2.4648 20 6 5.6691 1.7603 -3.6576 21 6 4.2843 1.7616 -3.6626 22 6 3.5870 1.6586 -2.4782 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8935 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 2.5278 1.2392 2.3343 31 1 5.9459 0.6279 6.7431 32 1 6.2270 1.4765 -0.3418 33 1 7.4448 1.6574 -2.4696 34 1 6.2095 1.8408 -4.5892 35 1 3.7493 1.8431 -4.5971 36 1 2.5070 1.6602 -2.4837 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254763091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:29 Heat of formation + Delta-G solvation = 11.688116 kcal Electronic energy + Delta-G solvation = -18623.185389 eV Core-core repulsion = 15686.641641 eV Total energy + Delta-G solvation = -2936.543747 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.16146 -37.76197 -36.20092 -33.69704 -32.64624 -31.82574 -30.76623 -29.31839 -27.34296 -26.24891 -23.18782 -22.24381 -21.42428 -20.45880 -18.75942 -17.89337 -16.50896 -15.91774 -15.56855 -14.89716 -14.83564 -14.16377 -14.02071 -13.82006 -13.33759 -13.20435 -12.95413 -12.74112 -12.58273 -12.02031 -11.78507 -11.44089 -11.40467 -11.16246 -11.06254 -10.87527 -10.67642 -10.57900 -10.49603 -10.35818 -9.30402 -9.08459 -8.78081 -8.74851 -7.76954 -7.21671 -6.41430 -4.94486 1.19649 1.62427 2.86349 3.05242 3.10422 3.14586 3.73596 4.09560 4.13100 4.44594 4.76359 5.04613 5.07825 5.11137 5.18339 5.26870 5.36356 5.55430 5.63682 5.74104 5.74628 5.80800 5.88847 5.92169 6.08888 6.15987 6.21036 6.30974 6.38548 6.56128 6.67731 6.81311 6.97233 7.19062 7.20728 7.82887 7.99490 8.68921 8.76302 9.29209 10.38601 10.63762 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.004918 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.618306 B = 5691.868640 C = 6747.455083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.105 4.105 4 C 0.042 3.958 5 N -0.182 5.182 6 N -0.585 5.585 7 C 0.558 3.442 8 O -0.553 6.553 9 C -0.538 4.538 10 H 0.071 0.929 11 C 0.089 3.911 12 N -0.745 5.745 13 Si 0.916 3.084 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.262 1.262 17 C -0.008 4.008 18 C -0.093 4.093 19 C -0.121 4.121 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.113 4.113 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.370 0.630 31 H 0.274 0.726 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 0.316 -14.342 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.145 4.145 4 C -0.147 4.147 5 N 0.008 4.992 6 N -0.332 5.332 7 C 0.366 3.634 8 O -0.432 6.432 9 C -0.575 4.575 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.372 5.372 13 Si 0.740 3.260 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.186 1.186 17 C -0.010 4.010 18 C -0.113 4.113 19 C -0.139 4.139 20 C -0.147 4.147 21 C -0.142 4.142 22 C -0.133 4.133 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.207 0.793 31 H 0.085 0.915 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.357 0.253 -13.549 14.572 hybrid contribution -1.782 -0.123 0.550 1.869 sum -7.139 0.131 -12.999 14.831 Atomic orbital electron populations 1.21773 0.95643 1.01608 1.01720 1.21482 0.95609 0.96014 1.02822 1.20939 0.92564 0.97839 1.03116 1.22806 0.92606 1.07637 0.91616 1.74853 1.26969 1.04795 0.92567 1.48067 1.07659 1.75166 1.02275 1.16904 0.87835 0.78250 0.80409 1.90703 1.13512 1.53819 1.85195 1.19816 0.94901 1.52022 0.90723 0.91112 1.25757 0.94663 0.92725 1.00311 1.70010 1.07565 1.31573 1.28054 0.86215 0.80236 0.79219 0.80347 1.19480 1.20112 1.18607 1.18369 0.92693 0.99452 0.90494 1.21567 0.93579 0.97369 0.98833 1.21098 0.99881 1.00538 0.92420 1.21193 0.94380 1.01340 0.97814 1.20947 0.94289 1.01431 0.97579 1.21255 0.99711 1.00896 0.91473 0.92834 0.92729 0.92606 0.91596 0.91662 0.91177 0.90314 0.79309 0.91486 0.84661 0.86143 0.86552 0.86315 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.59 5.86 -26.73 -0.16 -1.75 16 3 C -0.10 -1.49 4.37 -27.88 -0.12 -1.61 16 4 C 0.04 0.75 6.36 -79.61 -0.51 0.25 16 5 N -0.18 -4.16 10.19 35.11 0.36 -3.80 16 6 N -0.59 -14.11 6.11 28.99 0.18 -13.93 16 7 C 0.56 16.31 7.66 -15.19 -0.12 16.19 16 8 O -0.55 -18.54 15.23 5.00 0.08 -18.46 16 9 C -0.54 -14.94 9.27 -37.77 -0.35 -15.29 16 10 H 0.07 1.77 7.86 -52.48 -0.41 1.35 16 11 C 0.09 2.42 5.49 -17.33 -0.10 2.32 16 12 N -0.74 -21.85 11.74 55.56 0.65 -21.20 16 13 Si 0.92 19.39 29.57 -169.99 -5.03 14.36 16 14 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 17 C -0.01 -0.13 5.88 -104.99 -0.62 -0.75 16 18 C -0.09 -1.54 9.59 -39.07 -0.37 -1.92 16 19 C -0.12 -1.64 10.03 -39.65 -0.40 -2.03 16 20 C -0.13 -1.49 10.04 -39.41 -0.40 -1.89 16 21 C -0.12 -1.42 10.03 -39.64 -0.40 -1.81 16 22 C -0.11 -1.45 9.38 -39.06 -0.37 -1.82 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.01 8.00 -51.93 -0.42 0.60 16 28 H 0.07 1.03 6.64 -51.93 -0.34 0.69 16 29 H 0.08 0.92 6.22 -51.93 -0.32 0.60 16 30 H 0.37 7.67 6.32 -182.60 -1.15 6.52 16 31 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 32 H 0.14 2.54 7.55 -52.49 -0.40 2.14 16 33 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.33 6.25 -52.48 -0.33 1.00 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -34.33 311.88 -8.06 -42.39 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.47 Total: 7.28 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -3.53 Total: -11.33 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 1.19 Total: -38.94 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.08 Total: -18.46 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.33 -8.06 -42.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254763091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.077 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds