Wall clock time and date at job start Mon Mar 30 2020 06:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46943 * 2 1 4 4 C 1.50699 * 109.47215 * 179.97438 * 3 2 1 5 5 N 1.30446 * 119.99840 * 274.99871 * 4 3 2 6 6 N 1.40091 * 120.00260 * 359.97438 * 5 4 3 7 7 C 1.34775 * 120.00196 * 179.97438 * 6 5 4 8 8 O 1.21915 * 120.00271 * 0.02562 * 7 6 5 9 9 C 1.41055 * 120.00397 * 180.02562 * 7 6 5 10 10 H 1.08009 * 119.99915 * 353.74098 * 9 7 6 11 11 C 1.40226 * 120.00371 * 173.73900 * 9 7 6 12 12 N 1.30588 * 119.99657 * 6.26708 * 11 9 7 13 13 Si 1.86800 * 120.00138 * 186.27134 * 11 9 7 14 14 H 1.48492 * 109.47378 * 94.98103 * 13 11 9 15 15 H 1.48495 * 109.46975 * 214.98802 * 13 11 9 16 16 H 1.48506 * 109.46723 * 334.98176 * 13 11 9 17 17 C 1.47048 * 120.00040 * 94.99553 * 4 3 2 18 18 C 1.40011 * 120.18505 * 180.02562 * 17 4 3 19 19 C 1.37817 * 119.81454 * 179.97438 * 18 17 4 20 20 C 1.38472 * 120.18680 * 359.97438 * 19 18 17 21 21 C 1.38475 * 120.36997 * 0.04482 * 20 19 18 22 22 C 1.37829 * 120.18115 * 359.95175 * 21 20 19 23 23 H 1.08997 * 109.47038 * 60.00668 * 1 2 3 24 24 H 1.09006 * 109.46545 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46886 * 299.99837 * 1 2 3 26 26 H 1.08997 * 109.47430 * 239.99392 * 2 1 3 27 27 H 1.09005 * 109.46885 * 119.99103 * 2 1 3 28 28 H 1.08997 * 109.47554 * 59.99468 * 3 2 1 29 29 H 1.09000 * 109.47158 * 299.99724 * 3 2 1 30 30 H 0.97002 * 120.00005 * 0.02562 * 6 5 4 31 31 H 0.97005 * 119.99599 * 179.97438 * 12 11 9 32 32 H 1.08002 * 120.08732 * 359.70553 * 18 17 4 33 33 H 1.08007 * 119.90866 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.81530 * 180.02562 * 20 19 18 35 35 H 1.07991 * 119.91060 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.09502 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.1988 1.3443 1.1263 6 7 3.4978 1.2393 2.3347 7 6 4.1712 1.1373 3.4977 8 8 5.3903 1.1369 3.4983 9 6 3.4655 1.0310 4.7144 10 1 2.3902 1.1327 4.7257 11 6 4.1598 0.7932 5.9093 12 7 5.4656 0.7920 5.9165 13 14 3.2167 0.4782 7.4907 14 1 3.0720 -0.9851 7.6977 15 1 3.9568 1.0692 8.6344 16 1 1.8715 1.1004 7.3971 17 6 4.2828 1.5533 -1.2677 18 6 5.6829 1.5532 -1.2717 19 6 6.3648 1.6569 -2.4648 20 6 5.6691 1.7603 -3.6576 21 6 4.2843 1.7616 -3.6626 22 6 3.5870 1.6586 -2.4782 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8935 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 2.5278 1.2392 2.3343 31 1 5.9459 0.6279 6.7431 32 1 6.2270 1.4765 -0.3418 33 1 7.4448 1.6574 -2.4696 34 1 6.2095 1.8408 -4.5892 35 1 3.7493 1.8431 -4.5971 36 1 2.5070 1.6602 -2.4837 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254763091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:28 Heat of formation + Delta-G solvation = -11.519207 kcal Electronic energy + Delta-G solvation = -18624.191734 eV Core-core repulsion = 15686.641641 eV Total energy + Delta-G solvation = -2937.550092 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.43147 -39.50535 -37.82660 -35.17693 -34.60630 -33.32937 -31.84647 -30.85538 -28.81408 -27.91561 -24.48700 -23.33485 -22.50685 -22.23678 -20.39176 -19.57107 -17.96146 -17.51713 -17.29173 -16.16965 -15.95618 -15.68443 -15.37219 -15.30321 -14.71044 -14.52005 -14.43810 -14.25342 -13.75876 -13.34897 -13.15071 -12.94877 -12.78992 -12.70299 -12.53084 -12.14281 -12.03983 -11.99393 -11.89222 -11.63093 -11.02517 -10.74424 -10.21893 -10.01606 -9.82236 -8.89386 -8.45934 -7.11293 -0.01570 0.55633 1.35705 1.36821 1.55850 1.56371 2.06189 2.34267 2.41098 3.01835 3.51112 3.60154 3.91403 3.98767 4.12185 4.16987 4.25814 4.31861 4.53934 4.59285 4.60691 4.71257 4.82427 4.92137 5.02957 5.13468 5.15741 5.20605 5.22648 5.33615 5.42629 5.61350 5.65673 5.71548 5.79340 6.01263 6.12946 6.65272 6.94443 7.42845 8.39070 8.56010 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.004918 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.618306 B = 5691.868640 C = 6747.455083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.106 4.106 4 C 0.085 3.915 5 N -0.265 5.265 6 N -0.590 5.590 7 C 0.544 3.456 8 O -0.617 6.617 9 C -0.564 4.564 10 H 0.093 0.907 11 C 0.031 3.969 12 N -0.802 5.802 13 Si 1.010 2.990 14 H -0.260 1.260 15 H -0.268 1.268 16 H -0.244 1.244 17 C -0.051 4.051 18 C -0.119 4.119 19 C -0.131 4.131 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.097 4.097 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.381 0.619 31 H 0.282 0.718 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 0.455 -17.205 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.146 4.146 4 C -0.105 4.105 5 N -0.072 5.072 6 N -0.336 5.336 7 C 0.353 3.647 8 O -0.503 6.503 9 C -0.600 4.600 10 H 0.112 0.888 11 C -0.188 4.188 12 N -0.430 5.430 13 Si 0.828 3.172 14 H -0.184 1.184 15 H -0.192 1.192 16 H -0.166 1.166 17 C -0.053 4.053 18 C -0.140 4.140 19 C -0.149 4.149 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.117 4.117 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.220 0.780 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.152 0.848 34 H 0.172 0.828 35 H 0.181 0.819 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.443 0.400 -16.466 18.509 hybrid contribution -0.810 -0.121 0.986 1.282 sum -9.254 0.279 -15.480 18.037 Atomic orbital electron populations 1.21738 0.92991 1.02562 1.02831 1.21430 0.97797 0.94546 1.01622 1.21113 0.89671 0.99179 1.04600 1.23712 0.95033 1.00584 0.91134 1.74952 1.28076 1.10986 0.93153 1.47257 1.07720 1.76360 1.02262 1.17323 0.87367 0.77715 0.82294 1.90631 1.15955 1.56978 1.86715 1.20368 0.96096 1.52374 0.91142 0.88846 1.27169 0.95580 0.91272 1.04758 1.70181 1.10254 1.32749 1.29797 0.84832 0.78894 0.79504 0.73986 1.18405 1.19222 1.16638 1.18561 0.92636 1.03105 0.90995 1.21458 0.94359 0.99557 0.98604 1.21308 1.00839 1.00589 0.92156 1.21686 0.95036 0.98102 0.98113 1.21485 0.94293 0.99156 0.98570 1.21591 1.01173 0.98613 0.90336 0.90336 0.91917 0.92872 0.90720 0.95053 0.91839 0.86488 0.77955 0.90802 0.88949 0.84842 0.82785 0.81929 0.82839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.91 71.99 0.71 -1.94 16 2 C -0.11 -2.89 5.86 30.60 0.18 -2.71 16 3 C -0.11 -2.89 4.37 29.85 0.13 -2.75 16 4 C 0.08 3.13 6.36 45.08 0.29 3.42 16 5 N -0.26 -13.07 10.19 -42.82 -0.44 -13.51 16 6 N -0.59 -30.64 6.11 -180.31 -1.10 -31.74 16 7 C 0.54 34.21 7.66 84.93 0.65 34.86 16 8 O -0.62 -45.06 15.23 -5.04 -0.08 -45.14 16 9 C -0.56 -32.75 9.27 23.44 0.22 -32.54 16 10 H 0.09 4.77 7.86 -2.91 -0.02 4.75 16 11 C 0.03 1.72 5.49 85.36 0.47 2.19 16 12 N -0.80 -49.69 11.74 21.87 0.26 -49.43 16 13 Si 1.01 40.28 29.57 68.60 2.03 42.31 16 14 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 15 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 16 H -0.24 -8.88 7.11 99.48 0.71 -8.17 16 17 C -0.05 -1.63 5.88 -20.11 -0.12 -1.75 16 18 C -0.12 -4.14 9.59 22.60 0.22 -3.92 16 19 C -0.13 -3.41 10.03 22.23 0.22 -3.19 16 20 C -0.11 -2.11 10.04 22.38 0.22 -1.88 16 21 C -0.12 -2.04 10.03 22.23 0.22 -1.82 16 22 C -0.10 -2.12 9.38 22.60 0.21 -1.91 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.03 0.99 8.00 -2.38 -0.02 0.98 16 28 H 0.06 1.85 6.64 -2.39 -0.02 1.84 16 29 H 0.12 2.28 6.22 -2.39 -0.01 2.27 16 30 H 0.38 16.85 6.32 -213.32 -1.35 15.50 16 31 H 0.28 15.54 8.29 -92.70 -0.77 14.77 16 32 H 0.09 3.94 7.55 -2.91 -0.02 3.92 16 33 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 34 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.16 1.54 8.06 -2.92 -0.02 1.52 16 36 H 0.15 2.41 6.25 -2.91 -0.02 2.39 16 Total: -1.00 -84.74 311.88 4.04 -80.69 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -0.26 Total: 30.75 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 3.63 Total: -13.95 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -1.28 Total: -94.68 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -0.08 Total: -45.14 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -84.74 4.04 -80.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254763091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.175 kcal (2) G-P(sol) polarization free energy of solvation -84.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds