Wall clock time and date at job start Mon Mar 30 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46561 * 2 1 4 4 C 1.52993 * 109.47611 * 120.00246 * 2 1 3 5 5 H 1.09009 * 109.46843 * 53.05453 * 4 2 1 6 6 C 1.53001 * 109.47191 * 293.05868 * 4 2 1 7 7 C 1.50710 * 109.47139 * 68.34241 * 6 4 2 8 8 H 1.07999 * 119.99775 * 5.07909 * 7 6 4 9 9 C 1.37869 * 119.99972 * 185.07727 * 7 6 4 10 10 N 1.31513 * 120.00362 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99950 * 179.72596 * 9 7 6 12 12 H 1.48509 * 109.47274 * 180.27218 * 11 9 7 13 13 H 1.48495 * 109.47212 * 300.27145 * 11 9 7 14 14 H 1.48500 * 109.47313 * 60.27628 * 11 9 7 15 15 C 1.52997 * 109.47293 * 173.05429 * 4 2 1 16 16 H 1.09007 * 110.27912 * 54.45105 * 15 4 2 17 17 C 1.54167 * 110.31626 * 176.55649 * 15 4 2 18 18 C 1.53886 * 108.70100 * 146.81428 * 17 15 4 19 19 C 1.55045 * 106.62214 * 312.82126 * 18 17 15 20 20 S 1.82917 * 110.32235 * 292.33094 * 15 4 2 21 21 O 1.42098 * 109.35102 * 352.37130 * 20 15 4 22 22 O 1.42094 * 109.34995 * 125.57462 * 20 15 4 23 23 H 1.08991 * 109.47359 * 313.60154 * 1 2 3 24 24 H 1.08995 * 109.47487 * 73.60918 * 1 2 3 25 25 H 1.09002 * 109.46576 * 193.60571 * 1 2 3 26 26 H 1.09002 * 109.47188 * 240.00941 * 2 1 3 27 27 H 1.08992 * 109.47374 * 300.56118 * 3 2 1 28 28 H 1.09005 * 109.46530 * 60.56610 * 3 2 1 29 29 H 1.09000 * 109.46720 * 180.55989 * 3 2 1 30 30 H 1.08997 * 109.47222 * 308.34387 * 6 4 2 31 31 H 1.08998 * 109.47433 * 188.33991 * 6 4 2 32 32 H 0.97007 * 119.99773 * 359.72246 * 10 9 7 33 33 H 1.08998 * 109.65281 * 266.66438 * 17 15 4 34 34 H 1.08998 * 109.64628 * 26.96745 * 17 15 4 35 35 H 1.08999 * 110.02394 * 72.10886 * 18 17 15 36 36 H 1.08994 * 110.02698 * 193.48077 * 18 17 15 37 37 H 1.09003 * 110.79144 * 160.70323 * 19 18 17 38 38 H 1.09005 * 110.79213 * 283.97409 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.5789 -1.7068 1.3134 6 6 1.6775 0.0935 2.4923 7 6 0.1835 0.0715 2.6893 8 1 -0.4370 -0.5355 2.0466 9 6 -0.3911 0.8261 3.6898 10 7 0.3644 1.5648 4.4728 11 14 -2.2436 0.8047 3.9290 12 1 -2.6073 1.6984 5.0580 13 1 -2.9084 1.2787 2.6887 14 1 -2.6879 -0.5798 4.2308 15 6 3.5601 -0.8740 1.1649 16 1 4.0289 0.0964 1.0016 17 6 4.1052 -1.5217 2.4533 18 6 5.3216 -2.3921 2.0915 19 6 4.9080 -3.2441 0.8639 20 16 4.0088 -2.0306 -0.1794 21 8 2.8299 -2.6339 -0.6945 22 8 4.9246 -1.3954 -1.0608 23 1 -0.3633 0.7086 0.7441 24 1 -0.3634 0.2900 -0.9858 25 1 -0.3632 -0.9989 0.2418 26 1 1.8934 -0.5137 -0.8901 27 1 1.6684 1.9593 -0.8848 28 1 1.6847 1.9534 0.8951 29 1 3.1298 1.4426 -0.0100 30 1 2.0117 1.1228 2.3624 31 1 2.1654 -0.3394 3.3656 32 1 1.3265 1.5756 4.3489 33 1 4.4067 -0.7443 3.1552 34 1 3.3324 -2.1424 2.9067 35 1 6.1713 -1.7587 1.8371 36 1 5.5779 -3.0417 2.9284 37 1 5.7868 -3.6246 0.3433 38 1 4.2533 -4.0624 1.1637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260320144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:39 Heat of formation + Delta-G solvation = -92.702323 kcal Electronic energy + Delta-G solvation = -19198.686006 eV Core-core repulsion = 16360.766750 eV Total energy + Delta-G solvation = -2837.919256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.25182 -36.83717 -35.96634 -35.32663 -32.77697 -30.72258 -27.89062 -26.66103 -25.79055 -23.54768 -22.34166 -20.66441 -18.87946 -18.20771 -17.11736 -16.54174 -16.31433 -15.33677 -14.99576 -14.32613 -14.00411 -13.71777 -13.62724 -13.34520 -12.74500 -12.55890 -12.11336 -11.92493 -11.84522 -11.81520 -11.43179 -11.39214 -11.22927 -10.96709 -10.85716 -10.73942 -10.42680 -10.38777 -10.14529 -10.08985 -9.93372 -9.68442 -9.01237 -8.44462 -8.28439 -6.32675 -3.99610 0.22955 2.72681 3.44361 3.44601 3.62984 3.73130 4.10644 4.40956 4.53777 4.71683 4.74468 4.86473 5.05994 5.36473 5.41080 5.50547 5.55033 5.62361 5.66082 5.80690 5.92308 6.02066 6.17884 6.27907 6.34129 6.53028 6.63798 6.68349 6.74255 6.91309 7.01364 7.40643 7.43828 7.52559 8.22556 8.49675 8.89539 9.66856 11.05754 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.028672 B = 0.006989 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.319727 B = 4005.294736 C = 4395.099976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.153 4.153 4 C -0.046 4.046 5 H 0.078 0.922 6 C 0.017 3.983 7 C -0.597 4.597 8 H 0.065 0.935 9 C 0.014 3.986 10 N -0.916 5.916 11 Si 1.060 2.940 12 H -0.284 1.284 13 H -0.287 1.287 14 H -0.289 1.289 15 C -0.534 4.534 16 H 0.138 0.862 17 C -0.109 4.109 18 C -0.120 4.120 19 C -0.595 4.595 20 S 2.366 3.634 21 O -0.932 6.932 22 O -0.949 6.949 23 H 0.098 0.902 24 H 0.026 0.974 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.021 0.979 31 H 0.010 0.990 32 H 0.267 0.733 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.669 -6.788 -5.105 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.210 4.210 4 C -0.066 4.066 5 H 0.096 0.904 6 C -0.021 4.021 7 C -0.635 4.635 8 H 0.083 0.917 9 C -0.189 4.189 10 N -0.553 5.553 11 Si 0.889 3.111 12 H -0.210 1.210 13 H -0.214 1.214 14 H -0.215 1.215 15 C -0.646 4.646 16 H 0.156 0.844 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.724 4.724 20 S 2.552 3.448 21 O -0.929 6.929 22 O -0.946 6.946 23 H 0.117 0.883 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.028 0.972 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.147 0.853 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.278 -6.173 -5.200 10.868 hybrid contribution 1.575 -0.753 -0.180 1.755 sum 8.853 -6.926 -5.380 12.461 Atomic orbital electron populations 1.22186 0.93936 1.03280 1.00486 1.21077 0.98154 0.95635 0.95797 1.22032 0.99432 0.97022 1.02554 1.21015 0.85637 1.01316 0.98643 0.90371 1.19402 0.97432 0.94751 0.90483 1.22321 0.92209 1.30360 1.18614 0.91674 1.25706 1.06440 0.93668 0.93087 1.70793 1.07019 1.38896 1.38566 0.83658 0.74876 0.76234 0.76346 1.20991 1.21365 1.21538 1.30442 1.08051 1.13504 1.12614 0.84400 1.22042 0.96854 0.99523 0.96363 1.22248 0.99092 0.97591 0.96931 1.30669 1.14210 1.14581 1.12923 1.09854 0.76355 0.79519 0.79058 1.93593 1.45892 1.75839 1.77593 1.93569 1.64584 1.74594 1.61901 0.88345 0.95459 0.93071 0.93519 0.93550 0.90339 0.93990 0.96068 0.97229 0.92208 0.88808 0.89200 0.89973 0.88836 0.85327 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 7.56 37.16 0.28 -2.57 16 2 C -0.09 -1.70 2.52 -90.62 -0.23 -1.93 16 3 C -0.15 -2.78 8.43 37.16 0.31 -2.47 16 4 C -0.05 -0.89 0.85 -90.62 -0.08 -0.96 16 5 H 0.08 1.54 7.68 -51.92 -0.40 1.15 16 6 C 0.02 0.39 3.36 -27.88 -0.09 0.30 16 7 C -0.60 -15.30 6.56 -34.44 -0.23 -15.53 16 8 H 0.07 1.64 5.10 -52.49 -0.27 1.38 16 9 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 10 N -0.92 -26.54 13.65 55.43 0.76 -25.78 16 11 Si 1.06 24.40 29.90 -169.99 -5.08 19.31 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 15 C -0.53 -8.15 2.64 -26.12 -0.07 -8.22 16 16 H 0.14 2.00 6.48 -51.92 -0.34 1.66 16 17 C -0.11 -1.40 4.62 -25.66 -0.12 -1.52 16 18 C -0.12 -1.18 6.48 -25.19 -0.16 -1.35 16 19 C -0.59 -6.18 7.32 38.24 0.28 -5.90 16 20 S 2.37 34.89 5.32 -107.50 -0.57 34.32 16 21 O -0.93 -16.71 15.83 -57.71 -0.91 -17.63 16 22 O -0.95 -16.33 18.15 -57.71 -1.05 -17.38 16 23 H 0.10 2.18 5.62 -51.93 -0.29 1.89 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 1.03 7.18 -51.93 -0.37 0.66 16 26 H 0.05 0.87 6.24 -51.93 -0.32 0.55 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.58 6.11 -51.93 -0.32 1.27 16 29 H 0.04 0.68 6.56 -51.93 -0.34 0.34 16 30 H 0.02 0.50 5.50 -51.93 -0.29 0.22 16 31 H 0.01 0.22 6.65 -51.93 -0.35 -0.12 16 32 H 0.27 7.66 7.19 -40.82 -0.29 7.36 16 33 H 0.09 1.18 8.08 -51.93 -0.42 0.77 16 34 H 0.09 1.21 7.59 -51.93 -0.39 0.81 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 294.79 15.07 4.44 4.44 Total: -1.00 -31.98 294.79 -8.33 -40.32 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.72 Total: 2.25 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: -0.20 Total: -39.86 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.76 Total: -25.78 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.96 Total: -35.00 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.08 Total: 19.31 kcal Atomic # 16 Polarization: 34.89 SS G_CDS: -0.57 Total: 34.32 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.98 -8.33 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.386 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds