Wall clock time and date at job start Mon Mar 30 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46561 * 2 1 4 4 C 1.52993 * 109.47611 * 120.00246 * 2 1 3 5 5 H 1.09009 * 109.46843 * 53.05453 * 4 2 1 6 6 C 1.53001 * 109.47191 * 293.05868 * 4 2 1 7 7 C 1.50710 * 109.47139 * 68.34241 * 6 4 2 8 8 H 1.07999 * 119.99775 * 5.07909 * 7 6 4 9 9 C 1.37869 * 119.99972 * 185.07727 * 7 6 4 10 10 N 1.31513 * 120.00362 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99950 * 179.72596 * 9 7 6 12 12 H 1.48509 * 109.47274 * 180.27218 * 11 9 7 13 13 H 1.48495 * 109.47212 * 300.27145 * 11 9 7 14 14 H 1.48500 * 109.47313 * 60.27628 * 11 9 7 15 15 C 1.52997 * 109.47293 * 173.05429 * 4 2 1 16 16 H 1.09007 * 110.27912 * 54.45105 * 15 4 2 17 17 C 1.54167 * 110.31626 * 176.55649 * 15 4 2 18 18 C 1.53886 * 108.70100 * 146.81428 * 17 15 4 19 19 C 1.55045 * 106.62214 * 312.82126 * 18 17 15 20 20 S 1.82917 * 110.32235 * 292.33094 * 15 4 2 21 21 O 1.42098 * 109.35102 * 352.37130 * 20 15 4 22 22 O 1.42094 * 109.34995 * 125.57462 * 20 15 4 23 23 H 1.08991 * 109.47359 * 313.60154 * 1 2 3 24 24 H 1.08995 * 109.47487 * 73.60918 * 1 2 3 25 25 H 1.09002 * 109.46576 * 193.60571 * 1 2 3 26 26 H 1.09002 * 109.47188 * 240.00941 * 2 1 3 27 27 H 1.08992 * 109.47374 * 300.56118 * 3 2 1 28 28 H 1.09005 * 109.46530 * 60.56610 * 3 2 1 29 29 H 1.09000 * 109.46720 * 180.55989 * 3 2 1 30 30 H 1.08997 * 109.47222 * 308.34387 * 6 4 2 31 31 H 1.08998 * 109.47433 * 188.33991 * 6 4 2 32 32 H 0.97007 * 119.99773 * 359.72246 * 10 9 7 33 33 H 1.08998 * 109.65281 * 266.66438 * 17 15 4 34 34 H 1.08998 * 109.64628 * 26.96745 * 17 15 4 35 35 H 1.08999 * 110.02394 * 72.10886 * 18 17 15 36 36 H 1.08994 * 110.02698 * 193.48077 * 18 17 15 37 37 H 1.09003 * 110.79144 * 160.70323 * 19 18 17 38 38 H 1.09005 * 110.79213 * 283.97409 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.5789 -1.7068 1.3134 6 6 1.6775 0.0935 2.4923 7 6 0.1835 0.0715 2.6893 8 1 -0.4370 -0.5355 2.0466 9 6 -0.3911 0.8261 3.6898 10 7 0.3644 1.5648 4.4728 11 14 -2.2436 0.8047 3.9290 12 1 -2.6073 1.6984 5.0580 13 1 -2.9084 1.2787 2.6887 14 1 -2.6879 -0.5798 4.2308 15 6 3.5601 -0.8740 1.1649 16 1 4.0289 0.0964 1.0016 17 6 4.1052 -1.5217 2.4533 18 6 5.3216 -2.3921 2.0915 19 6 4.9080 -3.2441 0.8639 20 16 4.0088 -2.0306 -0.1794 21 8 2.8299 -2.6339 -0.6945 22 8 4.9246 -1.3954 -1.0608 23 1 -0.3633 0.7086 0.7441 24 1 -0.3634 0.2900 -0.9858 25 1 -0.3632 -0.9989 0.2418 26 1 1.8934 -0.5137 -0.8901 27 1 1.6684 1.9593 -0.8848 28 1 1.6847 1.9534 0.8951 29 1 3.1298 1.4426 -0.0100 30 1 2.0117 1.1228 2.3624 31 1 2.1654 -0.3394 3.3656 32 1 1.3265 1.5756 4.3489 33 1 4.4067 -0.7443 3.1552 34 1 3.3324 -2.1424 2.9067 35 1 6.1713 -1.7587 1.8371 36 1 5.5779 -3.0417 2.9284 37 1 5.7868 -3.6246 0.3433 38 1 4.2533 -4.0624 1.1637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260320144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:39 Heat of formation + Delta-G solvation = -114.013238 kcal Electronic energy + Delta-G solvation = -19199.610116 eV Core-core repulsion = 16360.766750 eV Total energy + Delta-G solvation = -2838.843367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.71960 -38.06794 -37.17355 -36.50143 -34.76302 -32.01541 -29.57935 -28.14583 -27.13622 -25.13772 -23.83551 -21.85292 -20.31555 -19.53235 -18.84524 -17.79609 -17.61166 -16.58346 -16.42730 -15.59587 -15.46873 -15.27904 -15.00514 -14.65573 -14.22318 -13.86963 -13.57632 -13.27705 -13.11844 -13.06506 -12.90430 -12.78106 -12.70761 -12.63935 -12.39789 -12.10326 -11.95945 -11.90155 -11.55861 -11.49315 -11.35290 -11.23947 -10.59718 -10.39507 -10.32427 -8.47617 -6.12975 -0.88829 1.56003 1.61987 1.62883 1.79778 2.61452 2.65286 2.98894 3.31415 3.42190 3.69889 3.70792 3.84793 4.00342 4.08629 4.19565 4.32157 4.40769 4.63613 4.67165 4.75389 4.82004 4.89600 4.99299 5.01361 5.07347 5.11933 5.15669 5.21497 5.25006 5.38860 5.59857 5.68208 5.77593 6.21701 6.40900 6.79193 7.59485 8.91815 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.028672 B = 0.006989 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.319727 B = 4005.294736 C = 4395.099976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.041 4.041 5 H 0.067 0.933 6 C 0.022 3.978 7 C -0.594 4.594 8 H 0.066 0.934 9 C -0.037 4.037 10 N -0.948 5.948 11 Si 1.099 2.901 12 H -0.291 1.291 13 H -0.273 1.273 14 H -0.274 1.274 15 C -0.542 4.542 16 H 0.141 0.859 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.561 4.561 20 S 2.362 3.638 21 O -0.972 6.972 22 O -0.978 6.978 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.007 0.993 31 H 0.003 0.997 32 H 0.257 0.743 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.161 0.839 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.972 -8.423 -5.448 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.061 4.061 5 H 0.086 0.914 6 C -0.016 4.016 7 C -0.632 4.632 8 H 0.084 0.916 9 C -0.234 4.234 10 N -0.587 5.587 11 Si 0.923 3.077 12 H -0.217 1.217 13 H -0.198 1.198 14 H -0.199 1.199 15 C -0.653 4.653 16 H 0.159 0.841 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.694 4.694 20 S 2.551 3.449 21 O -0.969 6.969 22 O -0.975 6.975 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.142 0.858 37 H 0.179 0.821 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.555 -7.783 -5.581 12.842 hybrid contribution 1.226 -0.300 -0.087 1.266 sum 9.781 -8.084 -5.668 13.898 Atomic orbital electron populations 1.22097 0.94778 1.02050 1.00810 1.21151 0.97578 0.96393 0.96210 1.21973 1.00538 0.96191 1.01961 1.20767 0.88745 0.99821 0.96726 0.91427 1.19286 0.95720 0.94550 0.92053 1.22712 0.93982 1.28982 1.17527 0.91594 1.26893 1.09679 0.93574 0.93278 1.70905 1.06569 1.41010 1.40228 0.83145 0.71149 0.76872 0.76557 1.21710 1.19821 1.19906 1.30378 1.05093 1.14834 1.14983 0.84076 1.22082 0.98082 0.99835 0.94988 1.22343 0.97856 0.97630 0.97572 1.30497 1.14613 1.12912 1.11421 1.09758 0.75970 0.80027 0.79107 1.93539 1.48227 1.76259 1.78892 1.93531 1.64631 1.75985 1.63335 0.90836 0.93470 0.93767 0.92765 0.91991 0.92936 0.92333 0.97466 0.97908 0.93372 0.88944 0.90114 0.88126 0.85775 0.82082 0.82745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 7.56 71.98 0.54 -5.12 16 2 C -0.09 -3.66 2.52 -10.79 -0.03 -3.69 16 3 C -0.15 -5.44 8.43 71.98 0.61 -4.83 16 4 C -0.04 -1.58 0.85 -10.80 -0.01 -1.59 16 5 H 0.07 2.70 7.68 -2.38 -0.02 2.69 16 6 C 0.02 1.01 3.36 29.85 0.10 1.11 16 7 C -0.59 -31.04 6.56 25.60 0.17 -30.87 16 8 H 0.07 3.38 5.10 -2.91 -0.01 3.36 16 9 C -0.04 -2.05 5.46 84.65 0.46 -1.59 16 10 N -0.95 -56.35 13.65 21.44 0.29 -56.05 16 11 Si 1.10 49.52 29.90 68.60 2.05 51.57 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 15 C -0.54 -16.07 2.64 30.99 0.08 -15.99 16 16 H 0.14 4.01 6.48 -2.38 -0.02 4.00 16 17 C -0.11 -2.64 4.62 31.29 0.14 -2.50 16 18 C -0.12 -1.77 6.48 31.59 0.20 -1.57 16 19 C -0.56 -9.15 7.32 72.68 0.53 -8.61 16 20 S 2.36 65.58 5.32 -56.49 -0.30 65.28 16 21 O -0.97 -34.11 15.83 -127.49 -2.02 -36.13 16 22 O -0.98 -32.11 18.15 -127.49 -2.31 -34.43 16 23 H 0.07 3.32 5.62 -2.39 -0.01 3.31 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 1.79 7.18 -2.39 -0.02 1.78 16 26 H 0.05 2.02 6.24 -2.39 -0.01 2.01 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 2.17 6.11 -2.38 -0.01 2.16 16 29 H 0.06 1.89 6.56 -2.39 -0.02 1.87 16 30 H 0.01 0.35 5.50 -2.39 -0.01 0.34 16 31 H 0.00 0.13 6.65 -2.39 -0.02 0.11 16 32 H 0.26 15.24 7.19 -92.70 -0.67 14.58 16 33 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 34 H 0.08 2.06 7.59 -2.39 -0.02 2.04 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.16 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.15 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -70.57 294.79 1.67 -68.90 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 1.15 Total: 16.11 kcal Atomic # 6 Polarization: -78.05 SS G_CDS: 2.81 Total: -75.25 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.29 Total: -56.05 kcal Atomic # 8 Polarization: -66.23 SS G_CDS: -4.33 Total: -70.56 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.05 Total: 51.57 kcal Atomic # 16 Polarization: 65.58 SS G_CDS: -0.30 Total: 65.28 kcal Total: -70.57 1.67 -68.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.111 kcal (2) G-P(sol) polarization free energy of solvation -70.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds