Wall clock time and date at job start Mon Mar 30 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47325 * 2 1 4 4 H 1.08998 * 109.46961 * 304.67631 * 3 2 1 5 5 C 1.52991 * 109.47499 * 184.67143 * 3 2 1 6 6 C 1.50708 * 109.46898 * 65.00072 * 5 3 2 7 7 H 1.07996 * 119.99705 * 359.97438 * 6 5 3 8 8 C 1.37876 * 119.99986 * 180.02562 * 6 5 3 9 9 N 1.31514 * 119.99940 * 0.26897 * 8 6 5 10 10 Si 1.86800 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46951 * 89.99763 * 10 8 6 12 12 H 1.48499 * 109.47199 * 209.99567 * 10 8 6 13 13 H 1.48499 * 109.47133 * 329.99813 * 10 8 6 14 14 C 1.53000 * 109.47176 * 64.67094 * 3 2 1 15 15 H 1.09007 * 109.54784 * 305.60797 * 14 3 2 16 16 C 1.53036 * 109.55364 * 185.41440 * 14 3 2 17 17 C 1.52583 * 109.98634 * 176.49606 * 16 14 3 18 18 C 1.52594 * 110.64365 * 69.98983 * 17 16 14 19 19 C 1.53031 * 109.98308 * 290.00999 * 18 17 16 20 20 S 1.81672 * 109.54991 * 65.79854 * 14 3 2 21 21 O 1.42102 * 108.66534 * 288.48433 * 20 14 3 22 22 O 1.42102 * 108.66336 * 59.82424 * 20 14 3 23 23 H 1.08999 * 109.47050 * 176.98262 * 1 2 3 24 24 H 1.08998 * 109.47179 * 296.98394 * 1 2 3 25 25 H 1.08996 * 109.46878 * 56.98645 * 1 2 3 26 26 H 1.09000 * 109.47531 * 239.99426 * 2 1 3 27 27 H 1.09006 * 109.47099 * 119.99574 * 2 1 3 28 28 H 1.08996 * 109.47126 * 305.00076 * 5 3 2 29 29 H 1.08999 * 109.47417 * 184.99802 * 5 3 2 30 30 H 0.97004 * 120.00524 * 359.73125 * 9 8 6 31 31 H 1.09003 * 109.38352 * 296.65947 * 16 14 3 32 32 H 1.09000 * 109.38167 * 56.33481 * 16 14 3 33 33 H 1.09004 * 109.24265 * 190.28446 * 17 16 14 34 34 H 1.08996 * 109.24368 * 309.68461 * 17 16 14 35 35 H 1.09000 * 109.38021 * 50.16822 * 18 17 16 36 36 H 1.09000 * 109.38351 * 169.85168 * 18 17 16 37 37 H 1.09000 * 109.55220 * 183.50454 * 19 18 17 38 38 H 1.09003 * 109.55451 * 303.69858 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6099 1.9799 -0.8451 5 6 3.5654 1.4441 -0.1175 6 6 3.9668 0.8794 -1.4559 7 1 3.2095 0.5517 -2.1526 8 6 5.3007 0.7801 -1.7902 9 7 6.2230 1.1733 -0.9391 10 14 5.7982 0.0794 -3.4488 11 1 5.8862 1.1781 -4.4441 12 1 7.1200 -0.5866 -3.3285 13 1 4.7838 -0.9102 -3.8925 14 6 1.6282 2.1291 1.3038 15 1 0.5500 2.0412 1.4375 16 6 2.0187 3.6078 1.2495 17 6 1.5352 4.3214 2.5085 18 6 2.3378 3.8692 3.7250 19 6 1.9854 2.4218 4.0755 20 16 2.4803 1.3409 2.7014 21 8 1.9180 0.0525 2.9088 22 8 3.8826 1.4664 2.5084 23 1 -0.3633 -1.0262 -0.0541 24 1 -0.3633 0.4663 0.9158 25 1 -0.3633 0.5599 -0.8617 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9917 0.8325 0.6776 29 1 3.9356 2.4654 -0.0283 30 1 5.9647 1.5368 -0.0777 31 1 3.1030 3.6933 1.1789 32 1 1.5632 4.0702 0.3739 33 1 1.6538 5.3973 2.3797 34 1 0.4814 4.0935 2.6684 35 1 3.4025 3.9387 3.5021 36 1 2.1043 4.5138 4.5725 37 1 2.5152 2.1265 4.9811 38 1 0.9109 2.3369 4.2374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:50 Heat of formation + Delta-G solvation = -99.175758 kcal Electronic energy + Delta-G solvation = -19355.365400 eV Core-core repulsion = 16517.165434 eV Total energy + Delta-G solvation = -2838.199965 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.02179 -36.66477 -35.93535 -35.28368 -32.70714 -31.17436 -28.89177 -27.25644 -24.52037 -22.76978 -22.25975 -20.82658 -19.94283 -18.32742 -17.07872 -16.48996 -15.46023 -15.29634 -15.05801 -14.31259 -14.01802 -13.68947 -13.57406 -13.36809 -13.09917 -12.80570 -12.50139 -12.01069 -11.71693 -11.62302 -11.57454 -11.38778 -11.33866 -11.08384 -10.91608 -10.78152 -10.58730 -10.31939 -10.15348 -10.03696 -9.90268 -9.48739 -9.14578 -8.36664 -8.16027 -6.19918 -3.89256 0.35566 3.06732 3.49498 3.54243 3.69677 3.99806 4.14608 4.57152 4.60938 4.63901 4.83246 4.88215 5.00279 5.18630 5.36366 5.46734 5.53415 5.60187 5.64621 5.70373 5.77266 5.82776 5.89476 5.97993 6.08048 6.31042 6.32631 6.39673 6.42415 6.75530 6.90920 7.07988 7.52896 7.65767 8.32647 8.62524 9.04835 9.83046 11.21856 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.024568 B = 0.007651 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.439193 B = 3658.578689 C = 3978.994366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C -0.055 4.055 4 H 0.080 0.920 5 C -0.017 4.017 6 C -0.600 4.600 7 H 0.049 0.951 8 C 0.014 3.986 9 N -0.912 5.912 10 Si 1.068 2.932 11 H -0.290 1.290 12 H -0.285 1.285 13 H -0.290 1.290 14 C -0.549 4.549 15 H 0.125 0.875 16 C -0.107 4.107 17 C -0.139 4.139 18 C -0.109 4.109 19 C -0.620 4.620 20 S 2.409 3.591 21 O -0.945 6.945 22 O -0.913 6.913 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.019 0.981 30 H 0.277 0.723 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 5.793 8.555 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C -0.075 4.075 4 H 0.098 0.902 5 C -0.054 4.054 6 C -0.638 4.638 7 H 0.068 0.932 8 C -0.190 4.190 9 N -0.548 5.548 10 Si 0.897 3.103 11 H -0.217 1.217 12 H -0.211 1.211 13 H -0.216 1.216 14 C -0.660 4.660 15 H 0.143 0.857 16 C -0.146 4.146 17 C -0.177 4.177 18 C -0.147 4.147 19 C -0.748 4.748 20 S 2.591 3.409 21 O -0.942 6.942 22 O -0.910 6.910 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.145 0.855 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.206 4.662 7.671 13.592 hybrid contribution -2.038 1.039 1.055 2.519 sum -12.244 5.701 8.726 16.080 Atomic orbital electron populations 1.21813 0.97100 1.01020 1.00602 1.21914 0.94522 0.96979 1.04538 1.21041 1.00359 0.94395 0.91686 0.90160 1.19881 0.88092 0.98116 0.99355 1.21951 0.94393 1.45980 1.01500 0.93243 1.25746 0.93023 0.95990 1.04265 1.70657 1.35968 1.38929 1.09284 0.83572 0.75731 0.76257 0.74749 1.21684 1.21085 1.21605 1.30136 1.12025 1.06972 1.16854 0.85743 1.21433 1.03757 0.90705 0.98664 1.21731 1.00166 1.01725 0.94042 1.21261 1.02033 0.92260 0.99180 1.30402 1.11743 1.12204 1.20403 1.08652 0.77344 0.76664 0.78254 1.93535 1.80546 1.35244 1.84924 1.93667 1.27311 1.86409 1.83583 0.93115 0.93609 0.93167 0.89594 0.91092 0.94317 0.96250 0.91200 0.89028 0.89666 0.90047 0.91251 0.89592 0.90142 0.85507 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.59 37.16 0.36 -1.96 16 2 C -0.14 -2.82 5.10 -26.73 -0.14 -2.96 16 3 C -0.06 -1.11 1.58 -90.62 -0.14 -1.25 16 4 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 5 C -0.02 -0.44 2.59 -27.88 -0.07 -0.52 16 6 C -0.60 -17.17 8.34 -34.44 -0.29 -17.46 16 7 H 0.05 1.37 7.07 -52.49 -0.37 1.00 16 8 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 9 N -0.91 -29.00 13.65 55.43 0.76 -28.25 16 10 Si 1.07 26.06 29.90 -169.99 -5.08 20.97 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 C -0.55 -8.61 2.09 -26.71 -0.06 -8.67 16 15 H 0.12 1.56 6.38 -51.92 -0.33 1.23 16 16 C -0.11 -1.48 4.71 -26.93 -0.13 -1.61 16 17 C -0.14 -1.41 5.63 -27.15 -0.15 -1.57 16 18 C -0.11 -1.16 5.73 -26.92 -0.15 -1.31 16 19 C -0.62 -7.14 6.34 37.17 0.24 -6.91 16 20 S 2.41 41.15 4.04 -107.50 -0.43 40.72 16 21 O -0.95 -18.36 15.85 -57.81 -0.92 -19.28 16 22 O -0.91 -19.70 14.74 -57.81 -0.85 -20.55 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.64 6.58 -51.93 -0.34 0.29 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.85 6.83 -51.93 -0.35 1.49 16 27 H 0.07 1.50 5.46 -51.93 -0.28 1.21 16 28 H 0.04 1.08 5.25 -51.93 -0.27 0.81 16 29 H 0.02 0.51 6.31 -51.93 -0.33 0.18 16 30 H 0.28 8.92 7.22 -40.82 -0.29 8.62 16 31 H 0.09 1.46 6.52 -51.93 -0.34 1.12 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.09 1.00 8.02 -51.93 -0.42 0.58 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 295.53 15.07 4.45 4.45 Total: -1.00 -35.19 295.53 -8.64 -43.83 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.93 Total: 1.98 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: -0.63 Total: -43.87 kcal Atomic # 7 Polarization: -29.00 SS G_CDS: 0.76 Total: -28.25 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.77 Total: -39.83 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.97 kcal Atomic # 16 Polarization: 41.15 SS G_CDS: -0.43 Total: 40.72 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.19 -8.64 -43.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.348 kcal (2) G-P(sol) polarization free energy of solvation -35.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds