Wall clock time and date at job start Mon Mar 30 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47325 * 2 1 4 4 H 1.08998 * 109.46961 * 304.67631 * 3 2 1 5 5 C 1.52991 * 109.47499 * 184.67143 * 3 2 1 6 6 C 1.50708 * 109.46898 * 65.00072 * 5 3 2 7 7 H 1.07996 * 119.99705 * 359.97438 * 6 5 3 8 8 C 1.37876 * 119.99986 * 180.02562 * 6 5 3 9 9 N 1.31514 * 119.99940 * 0.26897 * 8 6 5 10 10 Si 1.86800 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46951 * 89.99763 * 10 8 6 12 12 H 1.48499 * 109.47199 * 209.99567 * 10 8 6 13 13 H 1.48499 * 109.47133 * 329.99813 * 10 8 6 14 14 C 1.53000 * 109.47176 * 64.67094 * 3 2 1 15 15 H 1.09007 * 109.54784 * 305.60797 * 14 3 2 16 16 C 1.53036 * 109.55364 * 185.41440 * 14 3 2 17 17 C 1.52583 * 109.98634 * 176.49606 * 16 14 3 18 18 C 1.52594 * 110.64365 * 69.98983 * 17 16 14 19 19 C 1.53031 * 109.98308 * 290.00999 * 18 17 16 20 20 S 1.81672 * 109.54991 * 65.79854 * 14 3 2 21 21 O 1.42102 * 108.66534 * 288.48433 * 20 14 3 22 22 O 1.42102 * 108.66336 * 59.82424 * 20 14 3 23 23 H 1.08999 * 109.47050 * 176.98262 * 1 2 3 24 24 H 1.08998 * 109.47179 * 296.98394 * 1 2 3 25 25 H 1.08996 * 109.46878 * 56.98645 * 1 2 3 26 26 H 1.09000 * 109.47531 * 239.99426 * 2 1 3 27 27 H 1.09006 * 109.47099 * 119.99574 * 2 1 3 28 28 H 1.08996 * 109.47126 * 305.00076 * 5 3 2 29 29 H 1.08999 * 109.47417 * 184.99802 * 5 3 2 30 30 H 0.97004 * 120.00524 * 359.73125 * 9 8 6 31 31 H 1.09003 * 109.38352 * 296.65947 * 16 14 3 32 32 H 1.09000 * 109.38167 * 56.33481 * 16 14 3 33 33 H 1.09004 * 109.24265 * 190.28446 * 17 16 14 34 34 H 1.08996 * 109.24368 * 309.68461 * 17 16 14 35 35 H 1.09000 * 109.38021 * 50.16822 * 18 17 16 36 36 H 1.09000 * 109.38351 * 169.85168 * 18 17 16 37 37 H 1.09000 * 109.55220 * 183.50454 * 19 18 17 38 38 H 1.09003 * 109.55451 * 303.69858 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6099 1.9799 -0.8451 5 6 3.5654 1.4441 -0.1175 6 6 3.9668 0.8794 -1.4559 7 1 3.2095 0.5517 -2.1526 8 6 5.3007 0.7801 -1.7902 9 7 6.2230 1.1733 -0.9391 10 14 5.7982 0.0794 -3.4488 11 1 5.8862 1.1781 -4.4441 12 1 7.1200 -0.5866 -3.3285 13 1 4.7838 -0.9102 -3.8925 14 6 1.6282 2.1291 1.3038 15 1 0.5500 2.0412 1.4375 16 6 2.0187 3.6078 1.2495 17 6 1.5352 4.3214 2.5085 18 6 2.3378 3.8692 3.7250 19 6 1.9854 2.4218 4.0755 20 16 2.4803 1.3409 2.7014 21 8 1.9180 0.0525 2.9088 22 8 3.8826 1.4664 2.5084 23 1 -0.3633 -1.0262 -0.0541 24 1 -0.3633 0.4663 0.9158 25 1 -0.3633 0.5599 -0.8617 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9917 0.8325 0.6776 29 1 3.9356 2.4654 -0.0283 30 1 5.9647 1.5368 -0.0777 31 1 3.1030 3.6933 1.1789 32 1 1.5632 4.0702 0.3739 33 1 1.6538 5.3973 2.3797 34 1 0.4814 4.0935 2.6684 35 1 3.4025 3.9387 3.5021 36 1 2.1043 4.5138 4.5725 37 1 2.5152 2.1265 4.9811 38 1 0.9109 2.3369 4.2374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:49 Heat of formation + Delta-G solvation = -124.402636 kcal Electronic energy + Delta-G solvation = -19356.459319 eV Core-core repulsion = 16517.165434 eV Total energy + Delta-G solvation = -2839.293885 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.36912 -38.07510 -37.24267 -36.62963 -34.84371 -32.36335 -30.48656 -28.59505 -26.16478 -24.36577 -23.79904 -21.88830 -21.44994 -19.64446 -19.07279 -17.77554 -16.97373 -16.58164 -16.26139 -15.65086 -15.54365 -15.26140 -14.98707 -14.77583 -14.42531 -14.38467 -13.60595 -13.34629 -13.31766 -13.22649 -12.97848 -12.84692 -12.67309 -12.57106 -12.25473 -12.16056 -11.95764 -11.82034 -11.71816 -11.56655 -11.25078 -11.15496 -10.70580 -10.46795 -10.36141 -8.60665 -6.29448 -0.90074 1.48966 1.60145 1.76637 1.83947 2.58548 2.77055 3.00902 3.23787 3.55884 3.61941 3.72085 3.78522 4.00409 4.10967 4.16072 4.27547 4.37683 4.46402 4.59977 4.69840 4.81135 4.86458 4.90034 4.96773 4.97840 5.14926 5.17178 5.23835 5.25329 5.34597 5.47372 5.49138 5.63369 6.07027 6.30137 6.66902 7.52804 8.80056 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.024568 B = 0.007651 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.439193 B = 3658.578689 C = 3978.994366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.146 4.146 3 C -0.052 4.052 4 H 0.085 0.915 5 C -0.016 4.016 6 C -0.609 4.609 7 H 0.054 0.946 8 C -0.047 4.047 9 N -0.942 5.942 10 Si 1.117 2.883 11 H -0.269 1.269 12 H -0.287 1.287 13 H -0.269 1.269 14 C -0.539 4.539 15 H 0.169 0.831 16 C -0.110 4.110 17 C -0.134 4.134 18 C -0.117 4.117 19 C -0.582 4.582 20 S 2.374 3.626 21 O -0.983 6.983 22 O -0.980 6.980 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.011 0.989 29 H 0.001 0.999 30 H 0.257 0.743 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.122 0.878 37 H 0.145 0.855 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.461 7.337 9.188 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.183 4.183 3 C -0.071 4.071 4 H 0.103 0.897 5 C -0.053 4.053 6 C -0.647 4.647 7 H 0.072 0.928 8 C -0.244 4.244 9 N -0.580 5.580 10 Si 0.939 3.061 11 H -0.194 1.194 12 H -0.212 1.212 13 H -0.194 1.194 14 C -0.650 4.650 15 H 0.187 0.813 16 C -0.149 4.149 17 C -0.171 4.171 18 C -0.156 4.156 19 C -0.715 4.715 20 S 2.563 3.437 21 O -0.980 6.980 22 O -0.977 6.977 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.019 0.981 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.140 0.860 37 H 0.163 0.837 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.613 6.170 8.270 17.082 hybrid contribution -1.015 0.609 0.944 1.514 sum -14.628 6.780 9.214 18.570 Atomic orbital electron populations 1.21779 0.93111 1.02446 1.02570 1.21892 0.98071 0.96204 1.02172 1.20844 0.96080 0.95422 0.94766 0.89658 1.19762 0.92536 0.96052 0.96975 1.22464 0.94605 1.44840 1.02761 0.92774 1.27423 0.93745 0.95834 1.07421 1.70808 1.36598 1.41418 1.09203 0.82957 0.75748 0.76614 0.70818 1.19444 1.21242 1.19371 1.30012 1.14155 1.07418 1.13452 0.81337 1.21489 1.01701 0.89838 1.01824 1.21770 1.01689 1.02438 0.91222 1.21445 1.01098 0.91950 1.01073 1.30098 1.14546 1.10408 1.16431 1.09120 0.76403 0.77597 0.80572 1.93478 1.80359 1.38352 1.85776 1.93592 1.31305 1.87524 1.85323 0.92098 0.91226 0.91519 0.92491 0.93089 0.97136 0.98114 0.93305 0.92813 0.88606 0.87838 0.87726 0.91834 0.86005 0.83723 0.81253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.59 71.98 0.69 -3.41 16 2 C -0.15 -5.87 5.10 30.59 0.16 -5.72 16 3 C -0.05 -2.11 1.58 -10.80 -0.02 -2.13 16 4 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 5 C -0.02 -0.87 2.59 29.85 0.08 -0.79 16 6 C -0.61 -36.38 8.34 25.60 0.21 -36.16 16 7 H 0.05 3.10 7.07 -2.91 -0.02 3.08 16 8 C -0.05 -2.92 5.46 84.65 0.46 -2.46 16 9 N -0.94 -63.24 13.65 21.45 0.29 -62.95 16 10 Si 1.12 53.42 29.90 68.60 2.05 55.48 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 C -0.54 -16.19 2.09 30.61 0.06 -16.13 16 15 H 0.17 3.50 6.38 -2.38 -0.02 3.48 16 16 C -0.11 -2.87 4.71 30.47 0.14 -2.72 16 17 C -0.13 -2.11 5.63 30.32 0.17 -1.94 16 18 C -0.12 -2.02 5.73 30.47 0.17 -1.85 16 19 C -0.58 -11.20 6.34 71.99 0.46 -10.74 16 20 S 2.37 81.83 4.04 -56.49 -0.23 81.60 16 21 O -0.98 -38.81 15.85 -127.40 -2.02 -40.83 16 22 O -0.98 -45.88 14.74 -127.40 -1.88 -47.76 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.07 1.67 6.58 -2.39 -0.02 1.65 16 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 2.54 6.83 -2.39 -0.02 2.53 16 27 H 0.05 2.25 5.46 -2.38 -0.01 2.23 16 28 H 0.01 0.64 5.25 -2.39 -0.01 0.63 16 29 H 0.00 0.04 6.31 -2.39 -0.02 0.02 16 30 H 0.26 17.90 7.22 -92.71 -0.67 17.24 16 31 H 0.05 1.80 6.52 -2.39 -0.02 1.79 16 32 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.10 1.01 8.09 -2.39 -0.02 0.99 16 35 H 0.06 1.41 8.02 -2.39 -0.02 1.39 16 36 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.17 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -85.11 295.53 1.94 -83.17 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.13 Total: 15.35 kcal Atomic # 6 Polarization: -86.64 SS G_CDS: 2.59 Total: -84.05 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: 0.29 Total: -62.95 kcal Atomic # 8 Polarization: -84.70 SS G_CDS: -3.90 Total: -88.59 kcal Atomic # 14 Polarization: 53.42 SS G_CDS: 2.05 Total: 55.48 kcal Atomic # 16 Polarization: 81.83 SS G_CDS: -0.23 Total: 81.60 kcal Total: -85.11 1.94 -83.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.234 kcal (2) G-P(sol) polarization free energy of solvation -85.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds