Wall clock time and date at job start Mon Mar 30 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47199 * 2 1 4 4 S 1.81397 * 109.47266 * 120.00016 * 2 1 3 5 5 O 1.42101 * 108.57954 * 291.65485 * 4 2 1 6 6 O 1.42102 * 108.57660 * 62.68046 * 4 2 1 7 7 C 1.81394 * 101.92450 * 177.16742 * 4 2 1 8 8 C 1.50702 * 109.47244 * 74.44192 * 7 4 2 9 9 H 1.07993 * 120.00739 * 264.73888 * 8 7 4 10 10 C 1.37885 * 119.99337 * 84.73296 * 8 7 4 11 11 N 1.31517 * 119.99610 * 165.24273 * 10 8 7 12 12 Si 1.86798 * 120.00056 * 345.24111 * 10 8 7 13 13 H 1.48502 * 109.46831 * 95.84354 * 12 10 8 14 14 H 1.48499 * 109.46766 * 215.83854 * 12 10 8 15 15 H 1.48494 * 109.47351 * 335.83816 * 12 10 8 16 16 C 1.53005 * 109.46938 * 314.45043 * 7 4 2 17 17 C 1.53000 * 109.47146 * 179.97438 * 16 7 4 18 18 C 1.52999 * 109.47260 * 59.99875 * 17 16 7 19 19 C 1.53005 * 109.47143 * 300.00127 * 18 17 16 20 20 C 1.52999 * 109.47564 * 194.44860 * 7 4 2 21 21 H 1.09001 * 109.46623 * 304.65532 * 1 2 3 22 22 H 1.08995 * 109.47062 * 64.65590 * 1 2 3 23 23 H 1.08992 * 109.47033 * 184.66117 * 1 2 3 24 24 H 1.08997 * 109.46696 * 239.99985 * 2 1 3 25 25 H 1.08996 * 109.47031 * 186.30033 * 3 2 1 26 26 H 1.09006 * 109.46878 * 306.30146 * 3 2 1 27 27 H 1.08998 * 109.47050 * 66.30113 * 3 2 1 28 28 H 0.96998 * 119.99489 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.47068 * 299.99561 * 16 7 4 30 30 H 1.09000 * 109.47454 * 59.99595 * 16 7 4 31 31 H 1.09002 * 109.46978 * 299.99861 * 17 16 7 32 32 H 1.08996 * 109.46978 * 179.97438 * 17 16 7 33 33 H 1.08999 * 109.47684 * 179.97438 * 18 17 16 34 34 H 1.08995 * 109.47304 * 59.99727 * 18 17 16 35 35 H 1.09002 * 109.47068 * 299.99997 * 19 18 17 36 36 H 1.09000 * 109.47454 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.46632 * 299.99866 * 20 7 4 38 38 H 1.09002 * 109.47136 * 60.00014 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1348 -0.8551 1.4811 5 8 1.8171 -0.0672 2.6202 6 8 1.7029 -2.2080 1.4308 7 6 3.9310 -0.8123 1.2315 8 6 4.4420 0.5803 1.4973 9 1 4.5753 1.2721 0.6788 10 6 4.7394 0.9712 2.7857 11 7 5.4479 2.0591 2.9958 12 14 4.1360 -0.0445 4.2327 13 1 5.2085 -0.9763 4.6648 14 1 3.7817 0.8581 5.3574 15 1 2.9383 -0.8225 3.8262 16 6 4.2550 -1.2077 -0.2106 17 6 5.7700 -1.1710 -0.4214 18 6 6.4426 -2.1528 0.5401 19 6 6.1186 -1.7574 1.9822 20 6 4.6031 -1.7945 2.1930 21 1 -0.3632 0.5844 0.8454 22 1 -0.3633 0.4399 -0.9287 23 1 -0.3633 -1.0242 0.0835 24 1 1.8933 -0.5138 -0.8900 25 1 3.1242 1.4445 -0.1128 26 1 1.5876 1.9879 -0.8283 27 1 1.7718 1.9227 0.9410 28 1 5.6574 2.3338 3.9022 29 1 3.8854 -2.2149 -0.4030 30 1 3.7762 -0.5080 -0.8956 31 1 6.1392 -0.1636 -0.2291 32 1 6.0008 -1.4531 -1.4485 33 1 7.5219 -2.1271 0.3897 34 1 6.0734 -3.1602 0.3479 35 1 6.4878 -0.7500 2.1745 36 1 6.5974 -2.4571 2.6672 37 1 4.3723 -1.5127 3.2202 38 1 4.2335 -2.8017 2.0006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260439397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:54 Heat of formation + Delta-G solvation = -63.757466 kcal Electronic energy + Delta-G solvation = -20167.375839 eV Core-core repulsion = 17330.711726 eV Total energy + Delta-G solvation = -2836.664113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.35042 -35.64289 -34.65328 -34.31326 -33.03097 -30.73530 -30.28754 -26.72568 -25.27959 -22.69755 -21.84986 -21.20367 -19.05930 -17.56958 -17.07177 -16.16535 -15.56833 -15.27654 -14.66982 -13.94541 -13.70792 -13.61784 -13.19999 -12.81944 -12.77134 -12.42982 -12.32140 -11.75218 -11.66932 -11.56669 -11.46033 -10.99451 -10.83962 -10.67768 -10.64379 -10.49778 -10.33163 -10.14160 -10.04030 -9.76774 -9.58375 -9.16862 -9.08562 -8.69129 -8.12096 -6.68567 -4.52268 1.34510 3.22905 3.37863 3.53328 4.00321 4.16133 4.78767 4.89820 5.11912 5.26016 5.35070 5.44048 5.54040 5.63796 5.68522 5.91796 5.95639 5.99783 6.03302 6.09255 6.16874 6.21143 6.25955 6.29240 6.35059 6.39678 6.48117 6.60085 6.70928 6.77799 6.87113 6.97027 6.97524 7.01542 7.24461 7.84430 8.32707 8.88948 10.33826 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.013778 C = 0.011328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.508028 B = 2031.680879 C = 2471.238903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.577 4.577 3 C -0.133 4.133 4 S 2.254 3.746 5 O -0.952 6.952 6 O -1.007 7.007 7 C -0.339 4.339 8 C -0.439 4.439 9 H 0.106 0.894 10 C 0.095 3.905 11 N -0.826 5.826 12 Si 0.877 3.123 13 H -0.291 1.291 14 H -0.293 1.293 15 H -0.215 1.215 16 C -0.093 4.093 17 C -0.102 4.102 18 C -0.111 4.111 19 C -0.104 4.104 20 C -0.107 4.107 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.115 0.885 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.280 0.720 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 -3.487 -5.805 6.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.681 4.681 3 C -0.191 4.191 4 S 2.453 3.547 5 O -0.949 6.949 6 O -1.003 7.003 7 C -0.430 4.430 8 C -0.489 4.489 9 H 0.124 0.876 10 C -0.120 4.120 11 N -0.459 5.459 12 Si 0.710 3.290 13 H -0.220 1.220 14 H -0.221 1.221 15 H -0.140 1.140 16 C -0.132 4.132 17 C -0.141 4.141 18 C -0.149 4.149 19 C -0.143 4.143 20 C -0.146 4.146 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.133 0.867 25 H 0.112 0.888 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.453 -3.827 -5.060 6.360 hybrid contribution -0.282 -0.056 0.269 0.393 sum -0.735 -3.883 -4.790 6.210 Atomic orbital electron populations 1.21558 0.92875 1.02052 1.02898 1.29934 1.04163 1.10521 1.23522 1.21768 1.03695 0.91351 1.02247 1.17215 0.84520 0.75043 0.77890 1.93485 1.84811 1.71773 1.44796 1.93271 1.83825 1.36077 1.87156 1.27030 1.13521 1.02281 1.00143 1.20763 1.39542 0.93258 0.95317 0.87649 1.25249 0.91808 0.95204 0.99787 1.69886 1.29638 1.22838 1.23581 0.87177 0.80336 0.80257 0.81185 1.22008 1.22127 1.14013 1.21422 0.98049 1.00120 0.93623 1.21399 0.94462 1.01231 0.96976 1.21441 0.99224 0.98530 0.95661 1.21461 0.94126 1.02910 0.95785 1.21696 0.97692 0.97850 0.97399 0.91897 0.91881 0.92384 0.86723 0.88757 0.93680 0.91319 0.91011 0.92500 0.91236 0.89922 0.93404 0.92746 0.93036 0.89442 0.93386 0.93068 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.20 37.16 0.34 -1.99 16 2 C -0.58 -10.74 2.53 -26.73 -0.07 -10.80 16 3 C -0.13 -2.40 8.18 37.16 0.30 -2.10 16 4 S 2.25 51.61 3.06 -107.50 -0.33 51.28 16 5 O -0.95 -24.61 12.57 -57.83 -0.73 -25.33 16 6 O -1.01 -25.19 17.78 -57.83 -1.03 -26.22 16 7 C -0.34 -7.11 0.30 -91.77 -0.03 -7.14 16 8 C -0.44 -9.95 4.47 -34.44 -0.15 -10.11 16 9 H 0.11 2.39 6.17 -52.49 -0.32 2.06 16 10 C 0.09 2.35 4.32 -17.82 -0.08 2.27 16 11 N -0.83 -21.21 13.96 55.43 0.77 -20.43 16 12 Si 0.88 21.58 21.60 -169.99 -3.67 17.91 16 13 H -0.29 -6.73 7.00 56.52 0.40 -6.34 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 15 H -0.21 -5.47 3.90 56.51 0.22 -5.25 16 16 C -0.09 -1.62 4.14 -26.73 -0.11 -1.73 16 17 C -0.10 -1.63 5.70 -26.73 -0.15 -1.79 16 18 C -0.11 -1.75 5.92 -26.73 -0.16 -1.91 16 19 C -0.10 -1.95 5.31 -26.70 -0.14 -2.09 16 20 C -0.11 -2.26 3.86 -26.71 -0.10 -2.37 16 21 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.11 1.87 6.54 -51.93 -0.34 1.53 16 25 H 0.09 1.71 4.21 -51.93 -0.22 1.49 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.35 7.79 -51.93 -0.40 0.95 16 28 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.09 5.47 -51.93 -0.28 0.81 16 31 H 0.08 1.43 7.16 -51.93 -0.37 1.06 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.79 6.36 -51.93 -0.33 1.46 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 1.17 1.64 -51.93 -0.09 1.09 16 38 H 0.07 1.33 7.98 -51.93 -0.41 0.91 16 LS Contribution 275.82 15.07 4.16 4.16 Total: -1.00 -28.30 275.82 -7.07 -35.37 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.90 Total: 3.02 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: -0.35 Total: -39.75 kcal Atomic # 7 Polarization: -21.21 SS G_CDS: 0.77 Total: -20.43 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -1.76 Total: -51.55 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -3.67 Total: 17.91 kcal Atomic # 16 Polarization: 51.61 SS G_CDS: -0.33 Total: 51.28 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.30 -7.07 -35.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.390 kcal (2) G-P(sol) polarization free energy of solvation -28.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds