Wall clock time and date at job start Mon Mar 30 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47199 * 2 1 4 4 S 1.81397 * 109.47266 * 120.00016 * 2 1 3 5 5 O 1.42101 * 108.57954 * 291.65485 * 4 2 1 6 6 O 1.42102 * 108.57660 * 62.68046 * 4 2 1 7 7 C 1.81394 * 101.92450 * 177.16742 * 4 2 1 8 8 C 1.50702 * 109.47244 * 74.44192 * 7 4 2 9 9 H 1.07993 * 120.00739 * 264.73888 * 8 7 4 10 10 C 1.37885 * 119.99337 * 84.73296 * 8 7 4 11 11 N 1.31517 * 119.99610 * 165.24273 * 10 8 7 12 12 Si 1.86798 * 120.00056 * 345.24111 * 10 8 7 13 13 H 1.48502 * 109.46831 * 95.84354 * 12 10 8 14 14 H 1.48499 * 109.46766 * 215.83854 * 12 10 8 15 15 H 1.48494 * 109.47351 * 335.83816 * 12 10 8 16 16 C 1.53005 * 109.46938 * 314.45043 * 7 4 2 17 17 C 1.53000 * 109.47146 * 179.97438 * 16 7 4 18 18 C 1.52999 * 109.47260 * 59.99875 * 17 16 7 19 19 C 1.53005 * 109.47143 * 300.00127 * 18 17 16 20 20 C 1.52999 * 109.47564 * 194.44860 * 7 4 2 21 21 H 1.09001 * 109.46623 * 304.65532 * 1 2 3 22 22 H 1.08995 * 109.47062 * 64.65590 * 1 2 3 23 23 H 1.08992 * 109.47033 * 184.66117 * 1 2 3 24 24 H 1.08997 * 109.46696 * 239.99985 * 2 1 3 25 25 H 1.08996 * 109.47031 * 186.30033 * 3 2 1 26 26 H 1.09006 * 109.46878 * 306.30146 * 3 2 1 27 27 H 1.08998 * 109.47050 * 66.30113 * 3 2 1 28 28 H 0.96998 * 119.99489 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.47068 * 299.99561 * 16 7 4 30 30 H 1.09000 * 109.47454 * 59.99595 * 16 7 4 31 31 H 1.09002 * 109.46978 * 299.99861 * 17 16 7 32 32 H 1.08996 * 109.46978 * 179.97438 * 17 16 7 33 33 H 1.08999 * 109.47684 * 179.97438 * 18 17 16 34 34 H 1.08995 * 109.47304 * 59.99727 * 18 17 16 35 35 H 1.09002 * 109.47068 * 299.99997 * 19 18 17 36 36 H 1.09000 * 109.47454 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.46632 * 299.99866 * 20 7 4 38 38 H 1.09002 * 109.47136 * 60.00014 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1348 -0.8551 1.4811 5 8 1.8171 -0.0672 2.6202 6 8 1.7029 -2.2080 1.4308 7 6 3.9310 -0.8123 1.2315 8 6 4.4420 0.5803 1.4973 9 1 4.5753 1.2721 0.6788 10 6 4.7394 0.9712 2.7857 11 7 5.4479 2.0591 2.9958 12 14 4.1360 -0.0445 4.2327 13 1 5.2085 -0.9763 4.6648 14 1 3.7817 0.8581 5.3574 15 1 2.9383 -0.8225 3.8262 16 6 4.2550 -1.2077 -0.2106 17 6 5.7700 -1.1710 -0.4214 18 6 6.4426 -2.1528 0.5401 19 6 6.1186 -1.7574 1.9822 20 6 4.6031 -1.7945 2.1930 21 1 -0.3632 0.5844 0.8454 22 1 -0.3633 0.4399 -0.9287 23 1 -0.3633 -1.0242 0.0835 24 1 1.8933 -0.5138 -0.8900 25 1 3.1242 1.4445 -0.1128 26 1 1.5876 1.9879 -0.8283 27 1 1.7718 1.9227 0.9410 28 1 5.6574 2.3338 3.9022 29 1 3.8854 -2.2149 -0.4030 30 1 3.7762 -0.5080 -0.8956 31 1 6.1392 -0.1636 -0.2291 32 1 6.0008 -1.4531 -1.4485 33 1 7.5219 -2.1271 0.3897 34 1 6.0734 -3.1602 0.3479 35 1 6.4878 -0.7500 2.1745 36 1 6.5974 -2.4571 2.6672 37 1 4.3723 -1.5127 3.2202 38 1 4.2335 -2.8017 2.0006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260439397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:54 Heat of formation + Delta-G solvation = -83.424843 kcal Electronic energy + Delta-G solvation = -20168.228681 eV Core-core repulsion = 17330.711726 eV Total energy + Delta-G solvation = -2837.516954 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.86390 -37.53951 -36.54063 -35.81458 -34.78939 -32.28289 -31.73461 -28.13838 -26.99760 -24.19720 -23.34309 -22.71691 -20.60772 -19.36348 -18.80544 -17.82242 -17.30857 -17.01356 -16.39474 -15.54446 -15.28976 -15.24756 -14.71657 -14.39174 -14.24532 -14.02222 -13.85195 -13.36042 -13.20951 -13.14865 -13.08652 -12.63594 -12.53030 -12.33028 -12.19241 -12.03576 -11.90995 -11.77759 -11.54012 -11.32608 -11.20114 -10.80670 -10.70291 -10.50394 -9.90776 -8.60192 -6.39095 -0.40714 1.24968 1.36219 1.56551 2.21581 2.26220 3.01074 3.12219 3.50892 3.75187 3.85643 3.90586 4.04688 4.18575 4.33643 4.47566 4.51776 4.55116 4.64991 4.70298 4.72518 4.74033 4.84371 4.95872 4.98634 5.06030 5.11940 5.14449 5.31690 5.44150 5.45548 5.52814 5.54090 5.56654 5.84198 6.03118 6.52456 7.04299 8.46406 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.013778 C = 0.011328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.508028 B = 2031.680879 C = 2471.238903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.557 4.557 3 C -0.135 4.135 4 S 2.238 3.762 5 O -0.993 6.993 6 O -1.033 7.033 7 C -0.336 4.336 8 C -0.429 4.429 9 H 0.109 0.891 10 C 0.078 3.922 11 N -0.861 5.861 12 Si 0.886 3.114 13 H -0.280 1.280 14 H -0.316 1.316 15 H -0.230 1.230 16 C -0.097 4.097 17 C -0.100 4.100 18 C -0.109 4.109 19 C -0.105 4.105 20 C -0.119 4.119 21 H 0.053 0.947 22 H 0.102 0.898 23 H 0.056 0.944 24 H 0.150 0.850 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.278 0.722 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.028 0.972 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.296 -4.355 -9.141 10.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.666 4.666 3 C -0.192 4.192 4 S 2.442 3.558 5 O -0.990 6.990 6 O -1.029 7.029 7 C -0.429 4.429 8 C -0.477 4.477 9 H 0.126 0.874 10 C -0.133 4.133 11 N -0.497 5.497 12 Si 0.721 3.279 13 H -0.208 1.208 14 H -0.246 1.246 15 H -0.156 1.156 16 C -0.137 4.137 17 C -0.139 4.139 18 C -0.147 4.147 19 C -0.143 4.143 20 C -0.158 4.158 21 H 0.072 0.928 22 H 0.121 0.879 23 H 0.075 0.925 24 H 0.168 0.832 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.398 -4.717 -8.342 9.592 hybrid contribution -0.448 0.136 1.206 1.294 sum -0.846 -4.581 -7.136 8.522 Atomic orbital electron populations 1.21699 0.91460 1.02393 1.04690 1.29676 1.05489 1.10350 1.21107 1.21791 1.03934 0.91000 1.02493 1.16593 0.85382 0.74740 0.79093 1.93455 1.85540 1.72230 1.47745 1.93247 1.84343 1.37292 1.88021 1.27086 1.11476 1.01420 1.02955 1.20798 1.38462 0.94060 0.94362 0.87378 1.25394 0.92362 0.95154 1.00386 1.69897 1.32306 1.24152 1.23391 0.87138 0.80067 0.79740 0.80979 1.20848 1.24561 1.15610 1.21592 0.99730 1.01435 0.90904 1.21399 0.92975 1.00468 0.99015 1.21472 1.00743 0.99234 0.93217 1.21464 0.92216 1.02044 0.98607 1.21833 0.99661 0.98223 0.96084 0.92811 0.87916 0.92462 0.83205 0.88872 0.89984 0.93760 0.91224 0.91053 0.89129 0.91593 0.89825 0.90633 0.91415 0.91779 0.92204 0.95422 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.20 71.98 0.66 -3.81 16 2 C -0.56 -18.80 2.53 30.60 0.08 -18.73 16 3 C -0.13 -4.45 8.18 71.98 0.59 -3.86 16 4 S 2.24 100.34 3.06 -56.49 -0.17 100.17 16 5 O -0.99 -52.34 12.57 -127.37 -1.60 -53.94 16 6 O -1.03 -50.67 17.78 -127.37 -2.27 -52.93 16 7 C -0.34 -13.62 0.30 -11.54 0.00 -13.63 16 8 C -0.43 -19.25 4.47 25.60 0.11 -19.13 16 9 H 0.11 4.78 6.17 -2.91 -0.02 4.76 16 10 C 0.08 3.97 4.32 84.66 0.37 4.33 16 11 N -0.86 -45.46 13.96 21.45 0.30 -45.16 16 12 Si 0.89 45.23 21.60 68.60 1.48 46.71 16 13 H -0.28 -13.35 7.00 99.48 0.70 -12.66 16 14 H -0.32 -16.95 7.11 99.48 0.71 -16.25 16 15 H -0.23 -12.25 3.90 99.38 0.39 -11.86 16 16 C -0.10 -3.03 4.14 30.60 0.13 -2.90 16 17 C -0.10 -2.80 5.70 30.59 0.17 -2.62 16 18 C -0.11 -3.06 5.92 30.60 0.18 -2.88 16 19 C -0.10 -3.76 5.31 30.61 0.16 -3.60 16 20 C -0.12 -4.93 3.86 30.61 0.12 -4.82 16 21 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.15 4.07 6.54 -2.39 -0.02 4.06 16 25 H 0.09 3.11 4.21 -2.39 -0.01 3.10 16 26 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.04 1.68 7.79 -2.39 -0.02 1.67 16 28 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 2.40 5.47 -2.39 -0.01 2.39 16 31 H 0.07 2.09 7.16 -2.39 -0.02 2.07 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 2.61 6.36 -2.39 -0.02 2.59 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.03 1.29 1.64 -2.39 0.00 1.29 16 38 H 0.07 2.92 7.98 -2.39 -0.02 2.90 16 Total: -1.00 -63.14 275.82 1.02 -62.11 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.71 Total: 14.67 kcal Atomic # 6 Polarization: -74.21 SS G_CDS: 2.57 Total: -71.64 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.30 Total: -45.16 kcal Atomic # 8 Polarization: -103.00 SS G_CDS: -3.87 Total: -106.87 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.48 Total: 46.71 kcal Atomic # 16 Polarization: 100.34 SS G_CDS: -0.17 Total: 100.17 kcal Total: -63.14 1.02 -62.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.312 kcal (2) G-P(sol) polarization free energy of solvation -63.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds