Wall clock time and date at job start Mon Mar 30 2020 06:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47559 * 2 1 4 4 C 1.53002 * 109.46683 * 240.00106 * 2 1 3 5 5 C 1.50694 * 109.47315 * 63.83538 * 4 2 1 6 6 H 1.08007 * 120.00055 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00321 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99671 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00264 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47189 * 60.00014 * 9 7 5 11 11 H 1.48501 * 109.47224 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47176 * 300.00190 * 9 7 5 13 13 C 1.53002 * 109.46962 * 120.00577 * 2 1 3 14 14 H 1.08998 * 108.59936 * 60.40319 * 13 2 1 15 15 C 1.44337 * 108.73705 * 178.57244 * 13 2 1 16 16 C 1.53989 * 113.18750 * 186.53637 * 15 13 2 17 17 C 1.50774 * 108.43319 * 273.76384 * 16 15 13 18 18 S 1.82255 * 111.28037 * 96.34939 * 17 16 15 19 19 O 1.42109 * 108.16713 * 203.86438 * 18 17 16 20 20 O 1.42102 * 108.16974 * 73.97055 * 18 17 16 21 21 C 1.82250 * 104.44903 * 318.91683 * 18 17 16 22 22 C 1.50782 * 111.27829 * 318.91714 * 21 18 17 23 23 H 1.09000 * 109.46864 * 307.13492 * 1 2 3 24 24 H 1.09004 * 109.47051 * 67.13357 * 1 2 3 25 25 H 1.08999 * 109.47398 * 187.13680 * 1 2 3 26 26 H 1.09000 * 109.47098 * 183.83383 * 4 2 1 27 27 H 1.09000 * 109.47175 * 303.83279 * 4 2 1 28 28 H 0.97006 * 120.00063 * 179.97438 * 8 7 5 29 29 H 1.08993 * 108.74520 * 307.49743 * 15 13 2 30 30 H 1.09010 * 108.73911 * 65.70508 * 15 13 2 31 31 H 1.08996 * 109.63749 * 33.44989 * 16 15 13 32 32 H 1.09005 * 109.63953 * 154.07699 * 16 15 13 33 33 H 1.09005 * 109.11700 * 216.81281 * 17 16 15 34 34 H 1.09006 * 109.11782 * 335.94545 * 17 16 15 35 35 H 1.09001 * 109.11500 * 198.46117 * 21 18 17 36 36 H 1.08996 * 109.11851 * 79.38384 * 21 18 17 37 37 H 1.08994 * 109.67588 * 216.08891 * 22 21 18 38 38 H 1.09005 * 109.67707 * 336.59677 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6167 0.0419 -2.4779 6 1 1.0411 0.9503 -2.3777 7 6 1.9642 -0.4195 -3.7298 8 7 2.6654 -1.5254 -3.8518 9 14 1.4389 0.5261 -5.2528 10 1 2.0079 1.8969 -5.2050 11 1 1.9339 -0.1739 -6.4653 12 1 -0.0433 0.6067 -5.2987 13 6 2.0400 -0.7214 1.2492 14 1 1.6749 -1.7482 1.2311 15 6 3.4829 -0.7417 1.2163 16 6 4.1033 -1.5839 2.3464 17 6 4.2449 -0.7118 3.5682 18 16 2.8372 -0.9319 4.7047 19 8 2.7221 0.2403 5.4997 20 8 2.9839 -2.1876 5.3537 21 6 1.3810 -1.0233 3.6127 22 6 1.4716 -0.0160 2.4944 23 1 -0.3633 0.6204 0.8193 24 1 -0.3633 0.3993 -0.9469 25 1 -0.3634 -1.0197 0.1277 26 1 3.1278 -0.7812 -1.2157 27 1 1.6216 -1.7272 -1.2843 28 1 2.9096 -1.8502 -4.7326 29 1 3.8057 -1.1492 0.2583 30 1 3.8496 0.2812 1.3025 31 1 3.4532 -2.4290 2.5727 32 1 5.0845 -1.9448 2.0380 33 1 5.1672 -0.9720 4.0876 34 1 4.2924 0.3322 3.2581 35 1 0.4829 -0.8268 4.1982 36 1 1.3164 -2.0246 3.1869 37 1 0.4793 0.3766 2.2728 38 1 2.1320 0.8000 2.7880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260484036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:28 Heat of formation + Delta-G solvation = -94.540294 kcal Electronic energy + Delta-G solvation = -18512.866149 eV Core-core repulsion = 15674.867192 eV Total energy + Delta-G solvation = -2837.998957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.04911 -37.01978 -36.07844 -34.52265 -33.00414 -31.87697 -29.08258 -27.24034 -25.09314 -23.76607 -21.81953 -20.79035 -19.22129 -18.71923 -17.07927 -16.58244 -16.41437 -15.79360 -14.86888 -14.63632 -14.19520 -13.91511 -13.80001 -13.37108 -12.82122 -12.67516 -12.50291 -12.17882 -12.08563 -12.02311 -11.76310 -11.59061 -11.33467 -11.14479 -10.94229 -10.87035 -10.57207 -10.47879 -10.20813 -10.10695 -9.92139 -9.69130 -9.06237 -8.98196 -8.36629 -6.04197 -4.05340 -0.06411 2.63790 3.29463 3.34730 3.36660 3.57531 3.90629 4.41673 4.52998 4.61156 4.64916 4.69453 4.99051 5.09714 5.31730 5.33628 5.37860 5.54999 5.65879 5.78923 5.82084 5.93009 6.00368 6.13573 6.21721 6.42393 6.46815 6.53556 6.68184 6.93339 7.06293 7.11394 7.62492 7.77207 7.95289 8.39253 9.00664 9.58370 11.06970 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.044567 B = 0.004664 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.115673 B = 6001.883527 C = 6306.771173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 H 0.058 0.942 4 C 0.024 3.976 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.091 4.091 14 H 0.071 0.929 15 C -0.133 4.133 16 C -0.103 4.103 17 C -0.594 4.594 18 S 2.396 3.604 19 O -0.950 6.950 20 O -0.950 6.950 21 C -0.591 4.591 22 C -0.107 4.107 23 H 0.035 0.965 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.023 0.977 27 H 0.015 0.985 28 H 0.260 0.740 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 0.959 13.352 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.077 0.923 4 C -0.013 4.013 5 C -0.555 4.555 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.110 4.110 14 H 0.089 0.911 15 C -0.170 4.170 16 C -0.141 4.141 17 C -0.724 4.724 18 S 2.579 3.421 19 O -0.947 6.947 20 O -0.948 6.948 21 C -0.721 4.721 22 C -0.145 4.145 23 H 0.054 0.946 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.113 0.887 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.682 0.786 14.137 14.175 hybrid contribution -0.266 0.486 -1.667 1.756 sum 0.416 1.272 12.470 12.542 Atomic orbital electron populations 1.21852 0.96426 1.00339 1.00941 1.21292 0.95102 0.99310 0.94502 0.92326 1.19257 0.96332 0.95456 0.90274 1.21215 1.34032 1.09229 0.91030 0.92687 1.24998 0.95271 0.95050 0.99064 1.69939 1.38455 1.21607 1.23561 0.86717 0.78965 0.80066 0.82594 1.20310 1.21358 1.20317 1.20042 0.95552 1.00377 0.95013 0.91052 1.20602 0.95900 1.00414 1.00065 1.21134 1.03231 0.96949 0.92783 1.30068 1.18727 1.10299 1.13288 1.08909 0.79719 0.75204 0.78222 1.93559 1.85961 1.49780 1.65446 1.93558 1.85716 1.43478 1.72011 1.30035 1.19054 1.09611 1.13418 1.21379 1.04344 0.95773 0.93020 0.94634 0.91624 0.93762 0.95916 0.96634 0.92995 0.88621 0.91641 0.91145 0.89703 0.85214 0.84651 0.85147 0.84620 0.88733 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.58 37.16 0.32 -2.02 16 2 C -0.08 -1.49 1.91 -90.61 -0.17 -1.66 16 3 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.02 0.55 4.14 -27.88 -0.12 0.43 16 5 C -0.52 -13.64 8.30 -34.44 -0.29 -13.93 16 6 H 0.05 1.42 7.01 -52.48 -0.37 1.05 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C -0.09 -1.26 1.26 -94.13 -0.12 -1.38 16 14 H 0.07 0.99 7.22 -51.93 -0.37 0.61 16 15 C -0.13 -1.75 4.25 -30.24 -0.13 -1.88 16 16 C -0.10 -1.08 5.60 -27.33 -0.15 -1.23 16 17 C -0.59 -5.53 5.65 36.04 0.20 -5.33 16 18 S 2.40 26.41 4.98 -107.50 -0.53 25.88 16 19 O -0.95 -13.49 18.08 -57.89 -1.05 -14.54 16 20 O -0.95 -13.51 18.08 -57.89 -1.05 -14.56 16 21 C -0.59 -5.77 5.65 36.05 0.20 -5.56 16 22 C -0.11 -1.21 4.92 -27.33 -0.13 -1.34 16 23 H 0.03 0.49 6.22 -51.93 -0.32 0.17 16 24 H 0.06 1.24 6.69 -51.93 -0.35 0.90 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.55 5.99 -51.93 -0.31 0.24 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.10 1.51 5.60 -51.93 -0.29 1.22 16 30 H 0.06 0.81 7.21 -51.92 -0.37 0.43 16 31 H 0.07 0.68 6.92 -51.93 -0.36 0.32 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.13 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.14 1.12 6.79 -51.92 -0.35 0.77 16 35 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.14 1.20 6.79 -51.93 -0.35 0.85 16 37 H 0.09 1.06 5.51 -51.93 -0.29 0.77 16 38 H 0.07 0.68 6.93 -51.93 -0.36 0.32 16 LS Contribution 297.04 15.07 4.48 4.48 Total: -1.00 -33.10 297.04 -8.69 -41.78 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.77 Total: -1.47 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: -0.48 Total: -32.43 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.74 Total: -25.09 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -2.09 Total: -29.10 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 26.41 SS G_CDS: -0.53 Total: 25.88 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.10 -8.69 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.757 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds