Wall clock time and date at job start Mon Mar 30 2020 06:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47559 * 2 1 4 4 C 1.53002 * 109.46683 * 240.00106 * 2 1 3 5 5 C 1.50694 * 109.47315 * 63.83538 * 4 2 1 6 6 H 1.08007 * 120.00055 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00321 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99671 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00264 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47189 * 60.00014 * 9 7 5 11 11 H 1.48501 * 109.47224 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47176 * 300.00190 * 9 7 5 13 13 C 1.53002 * 109.46962 * 120.00577 * 2 1 3 14 14 H 1.08998 * 108.59936 * 60.40319 * 13 2 1 15 15 C 1.44337 * 108.73705 * 178.57244 * 13 2 1 16 16 C 1.53989 * 113.18750 * 186.53637 * 15 13 2 17 17 C 1.50774 * 108.43319 * 273.76384 * 16 15 13 18 18 S 1.82255 * 111.28037 * 96.34939 * 17 16 15 19 19 O 1.42109 * 108.16713 * 203.86438 * 18 17 16 20 20 O 1.42102 * 108.16974 * 73.97055 * 18 17 16 21 21 C 1.82250 * 104.44903 * 318.91683 * 18 17 16 22 22 C 1.50782 * 111.27829 * 318.91714 * 21 18 17 23 23 H 1.09000 * 109.46864 * 307.13492 * 1 2 3 24 24 H 1.09004 * 109.47051 * 67.13357 * 1 2 3 25 25 H 1.08999 * 109.47398 * 187.13680 * 1 2 3 26 26 H 1.09000 * 109.47098 * 183.83383 * 4 2 1 27 27 H 1.09000 * 109.47175 * 303.83279 * 4 2 1 28 28 H 0.97006 * 120.00063 * 179.97438 * 8 7 5 29 29 H 1.08993 * 108.74520 * 307.49743 * 15 13 2 30 30 H 1.09010 * 108.73911 * 65.70508 * 15 13 2 31 31 H 1.08996 * 109.63749 * 33.44989 * 16 15 13 32 32 H 1.09005 * 109.63953 * 154.07699 * 16 15 13 33 33 H 1.09005 * 109.11700 * 216.81281 * 17 16 15 34 34 H 1.09006 * 109.11782 * 335.94545 * 17 16 15 35 35 H 1.09001 * 109.11500 * 198.46117 * 21 18 17 36 36 H 1.08996 * 109.11851 * 79.38384 * 21 18 17 37 37 H 1.08994 * 109.67588 * 216.08891 * 22 21 18 38 38 H 1.09005 * 109.67707 * 336.59677 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6167 0.0419 -2.4779 6 1 1.0411 0.9503 -2.3777 7 6 1.9642 -0.4195 -3.7298 8 7 2.6654 -1.5254 -3.8518 9 14 1.4389 0.5261 -5.2528 10 1 2.0079 1.8969 -5.2050 11 1 1.9339 -0.1739 -6.4653 12 1 -0.0433 0.6067 -5.2987 13 6 2.0400 -0.7214 1.2492 14 1 1.6749 -1.7482 1.2311 15 6 3.4829 -0.7417 1.2163 16 6 4.1033 -1.5839 2.3464 17 6 4.2449 -0.7118 3.5682 18 16 2.8372 -0.9319 4.7047 19 8 2.7221 0.2403 5.4997 20 8 2.9839 -2.1876 5.3537 21 6 1.3810 -1.0233 3.6127 22 6 1.4716 -0.0160 2.4944 23 1 -0.3633 0.6204 0.8193 24 1 -0.3633 0.3993 -0.9469 25 1 -0.3634 -1.0197 0.1277 26 1 3.1278 -0.7812 -1.2157 27 1 1.6216 -1.7272 -1.2843 28 1 2.9096 -1.8502 -4.7326 29 1 3.8057 -1.1492 0.2583 30 1 3.8496 0.2812 1.3025 31 1 3.4532 -2.4290 2.5727 32 1 5.0845 -1.9448 2.0380 33 1 5.1672 -0.9720 4.0876 34 1 4.2924 0.3322 3.2581 35 1 0.4829 -0.8268 4.1982 36 1 1.3164 -2.0246 3.1869 37 1 0.4793 0.3766 2.2728 38 1 2.1320 0.8000 2.7880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260484036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:28 Heat of formation + Delta-G solvation = -117.026635 kcal Electronic energy + Delta-G solvation = -18513.841230 eV Core-core repulsion = 15674.867192 eV Total energy + Delta-G solvation = -2838.974038 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18243 -37.98885 -37.04929 -35.95499 -34.38457 -33.27650 -30.19345 -28.96750 -26.06379 -25.45544 -22.91027 -21.94364 -20.57511 -19.58959 -18.54868 -17.79906 -17.51518 -16.80104 -16.48010 -15.98799 -15.32389 -15.12139 -14.76737 -14.47294 -14.25443 -13.66245 -13.60073 -13.54346 -13.33641 -13.09984 -13.01320 -12.87560 -12.69240 -12.56522 -12.36573 -12.28060 -12.11025 -11.67343 -11.42167 -11.40739 -11.18771 -11.01093 -10.70204 -10.58895 -10.38216 -8.13957 -6.21076 -0.90359 1.41550 1.42434 1.50055 1.82510 2.43931 2.74588 3.04754 3.20008 3.69221 3.71513 3.76982 3.88442 4.06368 4.19985 4.39919 4.45775 4.56284 4.65730 4.74135 4.82522 4.90437 4.94047 5.00326 5.17738 5.26023 5.26804 5.30744 5.42402 5.53037 5.55878 5.64246 5.75576 5.98317 5.98838 6.36978 6.96517 7.46540 8.97117 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.044567 B = 0.004664 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.115673 B = 6001.883527 C = 6306.771173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 H 0.057 0.943 4 C 0.027 3.973 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.270 1.270 13 C -0.086 4.086 14 H 0.070 0.930 15 C -0.134 4.134 16 C -0.102 4.102 17 C -0.584 4.584 18 S 2.405 3.595 19 O -0.984 6.984 20 O -0.986 6.986 21 C -0.583 4.583 22 C -0.106 4.106 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.006 0.994 27 H -0.014 1.014 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 1.992 14.243 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 H 0.076 0.924 4 C -0.010 4.010 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.195 1.195 13 C -0.104 4.104 14 H 0.088 0.912 15 C -0.171 4.171 16 C -0.140 4.140 17 C -0.715 4.715 18 S 2.593 3.407 19 O -0.981 6.981 20 O -0.984 6.984 21 C -0.714 4.714 22 C -0.144 4.144 23 H 0.090 0.910 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.024 0.976 27 H 0.005 0.995 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.120 0.880 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.210 1.830 15.060 15.172 hybrid contribution -0.113 0.156 -1.993 2.003 sum 0.097 1.986 13.067 13.217 Atomic orbital electron populations 1.21817 0.95531 1.01005 1.00967 1.21167 0.95845 0.98835 0.93883 0.92439 1.19171 0.95243 0.94237 0.92313 1.21702 1.33264 1.09342 0.92345 0.92389 1.25839 0.95517 0.95976 1.02325 1.70072 1.40004 1.23294 1.24097 0.85706 0.78821 0.78924 0.78825 1.19409 1.21324 1.19542 1.19976 0.95915 1.00105 0.94399 0.91200 1.20558 0.95728 1.01303 0.99509 1.21119 1.03722 0.97003 0.92186 1.29954 1.18448 1.11059 1.12033 1.08497 0.80241 0.73650 0.78343 1.93515 1.86655 1.50646 1.67285 1.93513 1.86426 1.44745 1.73667 1.29933 1.18971 1.09909 1.12635 1.21360 1.04873 0.96311 0.91869 0.91005 0.94284 0.93690 0.97590 0.99543 0.93135 0.92058 0.90730 0.90249 0.88783 0.83168 0.83101 0.83000 0.83501 0.88002 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 8.58 71.98 0.62 -3.79 16 2 C -0.08 -2.75 1.91 -10.79 -0.02 -2.77 16 3 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 4 C 0.03 1.30 4.14 29.85 0.12 1.42 16 5 C -0.53 -28.30 8.30 25.60 0.21 -28.08 16 6 H 0.06 3.00 7.01 -2.91 -0.02 2.98 16 7 C 0.00 0.04 5.46 84.66 0.46 0.50 16 8 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 9 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 C -0.09 -2.23 1.26 -13.07 -0.02 -2.25 16 14 H 0.07 1.84 7.22 -2.39 -0.02 1.83 16 15 C -0.13 -3.37 4.25 28.32 0.12 -3.25 16 16 C -0.10 -1.94 5.60 30.21 0.17 -1.77 16 17 C -0.58 -9.22 5.65 71.26 0.40 -8.82 16 18 S 2.41 47.73 4.98 -56.49 -0.28 47.45 16 19 O -0.98 -26.04 18.08 -127.31 -2.30 -28.35 16 20 O -0.99 -26.59 18.08 -127.31 -2.30 -28.89 16 21 C -0.58 -9.58 5.65 71.26 0.40 -9.18 16 22 C -0.11 -2.05 4.92 30.21 0.15 -1.91 16 23 H 0.07 1.79 6.22 -2.39 -0.01 1.78 16 24 H 0.04 1.45 6.69 -2.38 -0.02 1.43 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.01 0.30 5.99 -2.39 -0.01 0.29 16 27 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 28 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 29 H 0.06 1.98 5.60 -2.39 -0.01 1.97 16 30 H 0.07 1.71 7.21 -2.38 -0.02 1.69 16 31 H 0.08 1.38 6.92 -2.39 -0.02 1.36 16 32 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.15 1.99 6.79 -2.39 -0.02 1.98 16 35 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.15 2.17 6.79 -2.39 -0.02 2.15 16 37 H 0.10 1.88 5.51 -2.39 -0.01 1.86 16 38 H 0.08 1.39 6.93 -2.38 -0.02 1.37 16 Total: -1.00 -72.28 297.04 1.09 -71.19 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.04 Total: 8.08 kcal Atomic # 6 Polarization: -62.52 SS G_CDS: 2.62 Total: -59.90 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.28 Total: -54.85 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -4.60 Total: -57.23 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 47.73 SS G_CDS: -0.28 Total: 47.45 kcal Total: -72.28 1.09 -71.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.833 kcal (2) G-P(sol) polarization free energy of solvation -72.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds