Wall clock time and date at job start Mon Mar 30 2020 06:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47346 * 2 1 4 4 C 1.52997 * 109.46730 * 120.00343 * 2 1 3 5 5 C 1.50702 * 109.47107 * 294.51308 * 4 2 1 6 6 H 1.07997 * 119.99964 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00208 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00158 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47167 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47202 * 119.99884 * 9 7 5 12 12 H 1.48500 * 109.47021 * 239.99732 * 9 7 5 13 13 C 1.52998 * 109.46930 * 240.00045 * 2 1 3 14 14 H 1.09005 * 110.40615 * 298.31450 * 13 2 1 15 15 C 1.53306 * 110.32142 * 176.11577 * 13 2 1 16 16 C 1.44552 * 115.20756 * 147.73909 * 15 13 2 17 17 C 1.55150 * 110.71452 * 63.90088 * 16 15 13 18 18 S 1.79153 * 109.60678 * 285.54152 * 17 16 15 19 19 O 1.42100 * 107.94202 * 204.63637 * 18 17 16 20 20 O 1.42100 * 107.94055 * 334.02285 * 18 17 16 21 21 C 1.82290 * 105.82290 * 89.27912 * 18 17 16 22 22 C 1.51263 * 110.32905 * 60.52387 * 13 2 1 23 23 H 1.08998 * 109.47200 * 300.00157 * 1 2 3 24 24 H 1.08999 * 109.46601 * 60.00225 * 1 2 3 25 25 H 1.09005 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47769 * 54.51402 * 4 2 1 27 27 H 1.09000 * 109.47126 * 174.51615 * 4 2 1 28 28 H 0.97001 * 120.00147 * 180.02562 * 8 7 5 29 29 H 1.09007 * 108.33163 * 269.22101 * 15 13 2 30 30 H 1.08995 * 108.33436 * 26.24638 * 15 13 2 31 31 H 1.09000 * 109.22486 * 184.21916 * 16 15 13 32 32 H 1.08998 * 109.22615 * 303.57921 * 16 15 13 33 33 H 1.08999 * 109.45055 * 45.58393 * 17 16 15 34 34 H 1.09000 * 109.45203 * 165.50144 * 17 16 15 35 35 H 1.09005 * 109.14282 * 79.47943 * 21 18 17 36 36 H 1.08998 * 109.15001 * 198.62690 * 21 18 17 37 37 H 1.09001 * 109.45037 * 344.12754 * 22 13 2 38 38 H 1.08999 * 109.45410 * 104.06694 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6515 0.0631 2.4759 6 1 1.0962 0.9838 2.3747 7 6 2.0052 -0.3946 3.7275 8 7 2.6819 -1.5155 3.8508 9 14 1.5231 0.5774 5.2481 10 1 0.7727 1.7926 4.8416 11 1 0.6674 -0.2639 6.1227 12 1 2.7467 0.9766 5.9889 13 6 2.0400 -0.7212 -1.2492 14 1 1.7098 -1.7601 -1.2497 15 6 3.5698 -0.6488 -1.3186 16 6 4.2131 -1.7904 -1.9290 17 6 3.8067 -1.9165 -3.4210 18 16 2.1289 -2.5337 -3.5371 19 8 1.9822 -3.1684 -4.8000 20 8 1.8563 -3.2842 -2.3616 21 6 1.0552 -1.0606 -3.5210 22 6 1.5571 -0.0159 -2.4972 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.5986 -1.7167 1.2997 27 1 3.1255 -0.8072 1.2015 28 1 2.9304 -1.8377 4.7313 29 1 3.8456 0.2423 -1.8825 30 1 3.9542 -0.5401 -0.3045 31 1 5.2944 -1.6723 -1.8602 32 1 3.9170 -2.6954 -1.3986 33 1 3.8673 -0.9381 -3.8977 34 1 4.4831 -2.6074 -3.9243 35 1 1.0482 -0.6125 -4.5147 36 1 0.0408 -1.3604 -3.2579 37 1 0.7422 0.6606 -2.2395 38 1 2.3778 0.5541 -2.9326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260484041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:32 Heat of formation + Delta-G solvation = -87.176782 kcal Electronic energy + Delta-G solvation = -18863.010929 eV Core-core repulsion = 16025.331278 eV Total energy + Delta-G solvation = -2837.679651 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.94009 -36.70331 -35.94867 -34.46335 -33.06209 -31.65619 -28.70430 -27.09372 -25.38436 -23.75958 -21.76250 -20.67260 -19.20425 -18.55472 -16.84255 -16.62083 -16.07818 -15.62005 -14.70915 -14.52251 -14.34136 -13.84158 -13.63058 -13.53050 -12.96077 -12.44942 -12.30564 -12.22530 -11.99200 -11.86487 -11.76252 -11.25329 -11.21424 -10.90488 -10.82671 -10.66167 -10.51308 -10.44527 -10.33082 -10.03926 -9.78472 -9.51511 -9.00881 -8.89958 -8.28647 -5.95127 -3.96273 0.04701 2.84423 3.32539 3.40509 3.43572 3.68645 3.95219 4.46661 4.49947 4.58355 4.64959 4.88165 4.96927 5.17331 5.39209 5.40328 5.49085 5.60771 5.68530 5.82664 5.94538 6.03167 6.13373 6.22487 6.32604 6.44339 6.54607 6.60898 6.72009 7.05365 7.12854 7.22510 7.76002 7.91662 8.07233 8.48651 9.10881 9.66836 11.16078 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.036618 B = 0.005431 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.472453 B = 5154.665299 C = 5386.998801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 H 0.057 0.943 4 C 0.024 3.976 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.139 4.139 14 H 0.112 0.888 15 C -0.144 4.144 16 C -0.094 4.094 17 C -0.623 4.623 18 S 2.420 3.580 19 O -0.962 6.962 20 O -0.929 6.929 21 C -0.601 4.601 22 C -0.105 4.105 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.048 0.952 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.259 0.741 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.088 0.912 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 2.431 -15.678 15.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 H 0.075 0.925 4 C -0.013 4.013 5 C -0.553 4.553 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.157 4.157 14 H 0.129 0.871 15 C -0.181 4.181 16 C -0.133 4.133 17 C -0.753 4.753 18 S 2.603 3.397 19 O -0.959 6.959 20 O -0.926 6.926 21 C -0.731 4.731 22 C -0.143 4.143 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.106 0.894 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.851 1.466 -15.626 15.717 hybrid contribution 0.018 1.298 0.798 1.524 sum 0.869 2.764 -14.827 15.108 Atomic orbital electron populations 1.21829 0.96489 1.01166 1.00127 1.21076 0.94792 0.98758 0.94119 0.92484 1.19227 0.96361 0.95705 0.90019 1.21302 1.34892 1.07909 0.91176 0.92677 1.25012 0.95415 0.95059 0.99018 1.69978 1.39227 1.20972 1.23220 0.86617 0.78190 0.80151 0.83500 1.19860 1.21124 1.21177 1.21989 0.94838 1.03357 0.95556 0.87082 1.20603 0.95883 0.97591 1.04022 1.20103 1.02186 1.01991 0.88972 1.30586 1.23897 1.13452 1.07358 1.07882 0.78767 0.78262 0.74795 1.93531 1.86054 1.72603 1.43738 1.93562 1.83468 1.67139 1.48386 1.30667 1.15660 1.18554 1.08174 1.21879 1.02304 0.96696 0.93423 0.91886 0.94846 0.93321 0.96188 0.96081 0.93166 0.92252 0.88817 0.89991 0.88973 0.85249 0.84840 0.85775 0.84848 0.89359 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.76 37.16 0.33 -2.18 16 2 C -0.07 -1.32 1.81 -90.62 -0.16 -1.48 16 3 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.02 0.59 4.32 -27.88 -0.12 0.47 16 5 C -0.51 -14.08 8.41 -34.44 -0.29 -14.37 16 6 H 0.06 1.47 7.09 -52.49 -0.37 1.10 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C -0.14 -2.15 1.49 -91.34 -0.14 -2.29 16 14 H 0.11 1.88 4.47 -51.93 -0.23 1.65 16 15 C -0.14 -2.01 4.43 -30.51 -0.14 -2.15 16 16 C -0.09 -1.16 5.34 -29.53 -0.16 -1.32 16 17 C -0.62 -6.10 5.83 38.30 0.22 -5.88 16 18 S 2.42 29.76 4.90 -107.50 -0.53 29.23 16 19 O -0.96 -14.39 18.05 -57.92 -1.05 -15.43 16 20 O -0.93 -15.34 14.10 -57.92 -0.82 -16.15 16 21 C -0.60 -6.05 6.49 38.02 0.25 -5.81 16 22 C -0.11 -1.21 5.00 -26.74 -0.13 -1.34 16 23 H 0.06 1.23 6.98 -51.93 -0.36 0.86 16 24 H 0.03 0.49 6.21 -51.93 -0.32 0.16 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.02 0.54 6.10 -51.93 -0.32 0.23 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.06 0.68 6.74 -51.93 -0.35 0.33 16 30 H 0.09 1.56 5.73 -51.93 -0.30 1.27 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.31 7.12 -51.93 -0.37 0.94 16 33 H 0.13 0.90 7.69 -51.74 -0.40 0.50 16 34 H 0.13 1.10 8.14 -51.74 -0.42 0.68 16 35 H 0.12 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.09 1.02 5.75 -51.93 -0.30 0.72 16 38 H 0.07 0.68 6.41 -51.93 -0.33 0.34 16 LS Contribution 294.11 15.07 4.43 4.43 Total: -1.00 -34.11 294.11 -8.42 -42.53 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.74 Total: -0.24 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: -0.44 Total: -34.86 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.86 Total: -31.59 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 29.76 SS G_CDS: -0.53 Total: 29.23 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.11 -8.42 -42.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.646 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds