Wall clock time and date at job start Mon Mar 30 2020 06:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46768 * 2 1 4 4 C 1.53005 * 109.47052 * 119.99533 * 2 1 3 5 5 C 1.50695 * 109.47040 * 295.00422 * 4 2 1 6 6 H 1.07999 * 120.00318 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00099 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99653 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00272 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47169 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47306 * 119.99667 * 9 7 5 12 12 H 1.48496 * 109.47309 * 239.99839 * 9 7 5 13 13 C 1.53000 * 109.47033 * 239.99676 * 2 1 3 14 14 H 1.08994 * 108.67123 * 58.68258 * 13 2 1 15 15 C 1.53740 * 108.79911 * 300.36083 * 13 2 1 16 16 C 1.52867 * 115.72195 * 195.00584 * 15 13 2 17 17 C 1.51513 * 109.69597 * 317.84672 * 16 15 13 18 18 C 1.53364 * 107.14304 * 101.94447 * 17 16 15 19 19 C 1.45198 * 115.15009 * 269.66558 * 18 17 16 20 20 S 1.79925 * 108.79239 * 176.99614 * 13 2 1 21 21 O 1.42098 * 108.58304 * 93.53645 * 20 13 2 22 22 O 1.42099 * 108.58524 * 322.48723 * 20 13 2 23 23 H 1.09000 * 109.47095 * 66.04303 * 1 2 3 24 24 H 1.09004 * 109.46734 * 186.04090 * 1 2 3 25 25 H 1.08995 * 109.47471 * 306.03907 * 1 2 3 26 26 H 1.09001 * 109.47024 * 55.00071 * 4 2 1 27 27 H 1.08994 * 109.46891 * 174.99994 * 4 2 1 28 28 H 0.97001 * 120.00286 * 180.02562 * 8 7 5 29 29 H 1.09003 * 108.22919 * 73.38788 * 15 13 2 30 30 H 1.08997 * 108.08325 * 316.51402 * 15 13 2 31 31 H 1.08996 * 109.43439 * 197.77498 * 16 15 13 32 32 H 1.09002 * 109.39319 * 77.89151 * 16 15 13 33 33 H 1.09004 * 109.92125 * 342.53478 * 17 16 15 34 34 H 1.08998 * 109.98508 * 221.38700 * 17 16 15 35 35 H 1.09007 * 108.34622 * 148.20083 * 18 17 16 36 36 H 1.08998 * 108.35329 * 31.14089 * 18 17 16 37 37 H 1.09003 * 109.33225 * 304.86615 * 19 18 17 38 38 H 1.09001 * 109.18969 * 185.30428 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9932 -0.4015 3.7284 8 7 2.6764 -1.5185 3.8513 9 14 1.4995 0.5636 5.2495 10 1 0.7419 1.7746 4.8433 11 1 0.6457 -0.2852 6.1189 12 1 2.7178 0.9686 5.9958 13 6 2.0400 -0.7213 -1.2492 14 1 1.6503 -0.2114 -2.1301 15 6 1.5116 -2.1650 -1.2381 16 6 2.1977 -3.1301 -2.2049 17 6 2.4230 -2.4442 -3.5370 18 6 3.8999 -2.0345 -3.5904 19 6 4.1917 -0.7092 -3.0740 20 16 3.8370 -0.6338 -1.2761 21 8 4.3566 -1.8053 -0.6624 22 8 4.2356 0.6401 -0.7888 23 1 -0.3633 0.4173 -0.9391 24 1 -0.3633 -1.0220 0.1082 25 1 -0.3634 0.6046 0.8309 26 1 1.6054 -1.7197 1.2953 27 1 3.1263 -0.7994 1.2057 28 1 2.9237 -1.8414 4.7319 29 1 0.4485 -2.1408 -1.4775 30 1 1.6228 -2.5582 -0.2276 31 1 1.5670 -4.0070 -2.3506 32 1 3.1569 -3.4383 -1.7889 33 1 1.7894 -1.5604 -3.6116 34 1 2.1986 -3.1316 -4.3526 35 1 4.2310 -2.0788 -4.6281 36 1 4.4784 -2.7604 -3.0190 37 1 3.5759 0.0245 -3.5942 38 1 5.2441 -0.4821 -3.2439 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260512106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:14 Heat of formation + Delta-G solvation = -91.587265 kcal Electronic energy + Delta-G solvation = -19247.694118 eV Core-core repulsion = 16409.823215 eV Total energy + Delta-G solvation = -2837.870904 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.21907 -36.61989 -35.78456 -35.37855 -32.70204 -31.55729 -28.47767 -26.92147 -25.69213 -23.16300 -22.52490 -20.68852 -19.19575 -17.91255 -16.78743 -16.42636 -16.04641 -15.27107 -14.99861 -14.39158 -14.30765 -13.96928 -13.61090 -13.24703 -12.91608 -12.38129 -12.28083 -12.05813 -11.78213 -11.53713 -11.51211 -11.37225 -11.10413 -10.92697 -10.88378 -10.82641 -10.73379 -10.35419 -10.16157 -9.91984 -9.86081 -9.51421 -9.19267 -8.97208 -8.29789 -5.93679 -3.96515 0.41170 3.19449 3.35775 3.43080 3.46759 4.11093 4.28523 4.47435 4.50927 4.73907 4.92638 4.96757 5.01934 5.09580 5.31263 5.41194 5.47695 5.64612 5.71940 5.81442 5.90158 5.97108 6.02445 6.10153 6.13356 6.22903 6.36121 6.52236 6.59757 6.78429 6.91796 6.98714 7.59048 7.73325 8.01687 8.42848 9.07918 9.66569 11.17433 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.031103 B = 0.006831 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.007026 B = 4098.159365 C = 4293.706334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 H 0.079 0.921 4 C 0.011 3.989 5 C -0.517 4.517 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C -0.558 4.558 14 H 0.117 0.883 15 C -0.097 4.097 16 C -0.150 4.150 17 C -0.135 4.135 18 C -0.119 4.119 19 C -0.604 4.604 20 S 2.415 3.585 21 O -0.924 6.924 22 O -0.936 6.936 23 H 0.033 0.967 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.032 0.968 27 H 0.017 0.983 28 H 0.260 0.740 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.300 -1.434 -16.712 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.095 4.095 3 H 0.098 0.902 4 C -0.026 4.026 5 C -0.555 4.555 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.669 4.669 14 H 0.135 0.865 15 C -0.135 4.135 16 C -0.188 4.188 17 C -0.172 4.172 18 C -0.157 4.157 19 C -0.730 4.730 20 S 2.596 3.404 21 O -0.921 6.921 22 O -0.933 6.933 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.141 0.859 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.595 -1.481 -15.900 15.980 hybrid contribution -0.692 0.573 0.106 0.905 sum -1.287 -0.908 -15.794 15.872 Atomic orbital electron populations 1.21664 0.94573 1.01856 1.00048 1.21174 0.97293 0.99316 0.91705 0.90220 1.19464 0.96251 0.96232 0.90623 1.21133 1.35331 1.08409 0.90624 0.92231 1.25033 0.95172 0.95111 0.99178 1.69992 1.38353 1.21028 1.23426 0.86548 0.78281 0.80073 0.83179 1.19715 1.21081 1.20971 1.30175 1.23597 1.05254 1.07863 0.86463 1.21354 1.00224 0.89398 1.02554 1.21915 1.03474 0.98937 0.94456 1.21717 0.95259 1.01524 0.98717 1.20018 0.98061 0.94547 1.03068 1.29042 1.10960 1.05462 1.27543 1.08541 0.78904 0.75603 0.77374 1.93557 1.77479 1.49217 1.71818 1.93565 1.80772 1.42064 1.76935 0.94758 0.92815 0.91602 0.94982 0.96492 0.92981 0.91003 0.88872 0.90607 0.89239 0.90856 0.90626 0.91039 0.89987 0.85879 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.36 37.16 0.31 -1.88 16 2 C -0.08 -1.53 1.89 -90.61 -0.17 -1.70 16 3 H 0.08 1.67 7.60 -51.93 -0.39 1.28 16 4 C 0.01 0.29 3.87 -27.88 -0.11 0.18 16 5 C -0.52 -14.77 8.48 -34.44 -0.29 -15.06 16 6 H 0.06 1.64 7.06 -52.49 -0.37 1.27 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 9 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 13 C -0.56 -8.92 1.62 -26.35 -0.04 -8.96 16 14 H 0.12 1.38 7.08 -51.71 -0.37 1.02 16 15 C -0.10 -1.45 3.87 -26.41 -0.10 -1.55 16 16 C -0.15 -1.85 5.46 -27.55 -0.15 -2.00 16 17 C -0.13 -1.32 5.66 -27.29 -0.15 -1.48 16 18 C -0.12 -1.23 4.94 -30.21 -0.15 -1.38 16 19 C -0.60 -6.87 5.89 33.49 0.20 -6.67 16 20 S 2.41 42.25 3.55 -107.50 -0.38 41.87 16 21 O -0.92 -19.21 14.70 -57.83 -0.85 -20.06 16 22 O -0.94 -20.02 17.18 -57.83 -0.99 -21.01 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.93 7.02 -51.93 -0.36 0.56 16 25 H 0.06 1.25 7.14 -51.93 -0.37 0.88 16 26 H 0.03 0.86 6.30 -51.93 -0.33 0.53 16 27 H 0.02 0.49 6.30 -51.93 -0.33 0.16 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 0.94 7.23 -51.93 -0.38 0.56 16 30 H 0.09 1.70 5.66 -51.93 -0.29 1.40 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.24 5.53 -51.93 -0.29 0.96 16 33 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 36 H 0.08 0.92 6.58 -51.93 -0.34 0.58 16 37 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 292.05 15.07 4.40 4.40 Total: -1.00 -34.97 292.05 -8.69 -43.66 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.82 Total: -0.32 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: -0.76 Total: -38.93 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.74 Total: -26.70 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.84 Total: -41.08 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 42.25 SS G_CDS: -0.38 Total: 41.87 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.97 -8.69 -43.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260512106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.932 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds