Wall clock time and date at job start Mon Mar 30 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47346 * 2 1 4 4 H 1.09001 * 109.46903 * 185.63554 * 3 2 1 5 5 C 1.52992 * 109.47700 * 65.63748 * 3 2 1 6 6 C 1.50696 * 109.47516 * 64.99748 * 5 3 2 7 7 H 1.07999 * 119.99571 * 359.97438 * 6 5 3 8 8 C 1.37877 * 120.00468 * 179.73127 * 6 5 3 9 9 N 1.31514 * 119.99782 * 0.27024 * 8 6 5 10 10 Si 1.86795 * 120.00373 * 180.27778 * 8 6 5 11 11 H 1.48496 * 109.47256 * 89.99516 * 10 8 6 12 12 H 1.48500 * 109.47367 * 210.00026 * 10 8 6 13 13 H 1.48506 * 109.46870 * 329.99528 * 10 8 6 14 14 C 1.52996 * 109.46982 * 305.63101 * 3 2 1 15 15 C 1.52587 * 109.24536 * 303.19897 * 14 3 2 16 16 C 1.53051 * 109.97898 * 169.67040 * 15 14 3 17 17 S 1.81673 * 108.96732 * 63.70829 * 16 15 14 18 18 O 1.42094 * 108.66690 * 191.35398 * 17 16 15 19 19 O 1.42110 * 108.66158 * 60.00982 * 17 16 15 20 20 C 1.81673 * 101.30648 * 305.68406 * 17 16 15 21 21 C 1.52586 * 109.24412 * 182.08120 * 14 3 2 22 22 H 1.09001 * 109.46958 * 61.71468 * 1 2 3 23 23 H 1.09000 * 109.47324 * 181.71941 * 1 2 3 24 24 H 1.08996 * 109.47225 * 301.71944 * 1 2 3 25 25 H 1.08998 * 109.47103 * 239.99030 * 2 1 3 26 26 H 1.09009 * 109.46572 * 119.99667 * 2 1 3 27 27 H 1.09008 * 109.46913 * 304.99955 * 5 3 2 28 28 H 1.08997 * 109.47784 * 185.00359 * 5 3 2 29 29 H 0.96998 * 120.00244 * 179.97438 * 9 8 6 30 30 H 1.08999 * 109.23864 * 62.64278 * 14 3 2 31 31 H 1.08992 * 109.38777 * 289.86990 * 15 14 3 32 32 H 1.09005 * 109.38545 * 49.55923 * 15 14 3 33 33 H 1.09002 * 109.58803 * 303.85696 * 16 15 14 34 34 H 1.08997 * 109.55290 * 183.54007 * 16 15 14 35 35 H 1.09001 * 109.54728 * 294.43917 * 20 17 16 36 36 H 1.09000 * 109.55381 * 174.15254 * 20 17 16 37 37 H 1.08995 * 109.38800 * 310.44698 * 21 14 3 38 38 H 1.09001 * 109.38239 * 70.13157 * 21 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1254 1.4440 -0.1009 5 6 1.6491 2.1217 1.3139 6 6 2.3600 1.4475 2.4590 7 1 3.0239 0.6173 2.2685 8 6 2.1668 1.8938 3.7491 9 7 1.3579 2.9046 3.9810 10 14 3.0540 1.0631 5.1676 11 1 4.3593 1.7335 5.3956 12 1 2.2253 1.1623 6.3959 13 1 3.2826 -0.3669 4.8389 14 6 1.4178 2.2033 -1.1724 15 6 1.7446 1.4768 -2.4738 16 6 0.9256 2.0688 -3.6232 17 16 1.4151 3.8015 -3.8656 18 8 0.4823 4.4193 -4.7417 19 8 2.8002 3.8430 -4.1806 20 6 1.1783 4.4756 -2.1953 21 6 1.9694 3.6258 -1.1983 22 1 -0.3633 0.4870 -0.9050 23 1 -0.3634 -1.0272 0.0308 24 1 -0.3633 0.5403 0.8741 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.5715 2.0417 1.4577 28 1 1.9338 3.1732 1.2782 29 1 1.2217 3.2184 4.8887 30 1 0.3361 2.2399 -1.0433 31 1 2.8069 1.5856 -2.6920 32 1 1.5053 0.4186 -2.3674 33 1 -0.1355 2.0205 -3.3787 34 1 1.1171 1.5047 -4.5360 35 1 0.1194 4.4487 -1.9379 36 1 1.5369 5.5044 -2.1628 37 1 1.8866 4.0641 -0.2038 38 1 3.0178 3.6018 -1.4953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260526814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:46 Heat of formation + Delta-G solvation = -101.884894 kcal Electronic energy + Delta-G solvation = -18659.207174 eV Core-core repulsion = 15820.889731 eV Total energy + Delta-G solvation = -2838.317442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.72183 -36.92708 -35.98781 -34.26832 -32.48684 -31.76791 -29.05709 -27.36940 -24.32733 -23.85189 -22.30903 -20.96827 -18.79606 -18.34913 -16.95520 -16.28183 -16.21267 -15.70576 -14.78884 -14.51860 -14.28335 -14.00232 -13.94553 -13.21738 -12.76928 -12.58671 -12.31405 -12.09122 -11.97649 -11.79608 -11.66706 -11.60816 -11.31611 -11.24385 -10.93522 -10.81500 -10.67501 -10.38723 -10.12897 -9.95104 -9.91733 -9.56250 -9.03828 -8.95938 -8.35790 -6.03993 -4.04670 0.07951 2.69459 3.28727 3.35898 3.38200 3.66496 3.98382 4.42414 4.61325 4.65414 4.78691 4.84680 5.09374 5.27945 5.32789 5.41133 5.61751 5.64957 5.75173 5.83636 5.87475 5.98990 6.06994 6.17966 6.35117 6.44191 6.45993 6.59411 6.76026 6.89278 7.04410 7.15411 7.65518 7.77981 7.96503 8.39580 9.01461 9.59019 11.07201 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.005268 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.166590 B = 5314.330864 C = 5668.406064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.075 4.075 4 H 0.061 0.939 5 C 0.023 3.977 6 C -0.514 4.514 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.887 3.113 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C -0.105 4.105 15 C -0.112 4.112 16 C -0.598 4.598 17 S 2.409 3.591 18 O -0.956 6.956 19 O -0.942 6.942 20 C -0.594 4.594 21 C -0.113 4.113 22 H 0.044 0.956 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.260 0.740 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.966 -1.349 -12.565 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.094 4.094 4 H 0.079 0.921 5 C -0.014 4.014 6 C -0.552 4.552 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.123 4.123 15 C -0.150 4.150 16 C -0.728 4.728 17 S 2.593 3.407 18 O -0.953 6.953 19 O -0.940 6.940 20 C -0.724 4.724 21 C -0.151 4.151 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.123 0.877 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.749 -0.810 -13.217 13.357 hybrid contribution 0.037 -0.728 1.570 1.731 sum -1.712 -1.538 -11.647 11.872 Atomic orbital electron populations 1.21859 0.96942 1.00292 1.01857 1.21498 0.95459 0.97129 1.00806 1.21199 0.98947 0.94164 0.95047 0.92054 1.19281 0.97085 0.95507 0.89508 1.21234 1.26480 1.16021 0.91495 0.92654 1.24989 0.95380 0.95113 0.98904 1.69946 1.36898 1.26119 1.20636 0.86667 0.79673 0.79942 0.82154 1.20754 1.21358 1.19943 1.21470 1.01792 0.93926 0.95152 1.21532 0.99472 1.02511 0.91462 1.30181 1.10869 1.23544 1.08205 1.08192 0.75537 0.78882 0.78116 1.93561 1.64863 1.74496 1.62409 1.93569 1.31544 1.86064 1.82778 1.30165 1.10434 1.11060 1.20734 1.21519 0.98754 0.94119 1.00676 0.93683 0.94274 0.91375 0.93979 0.90895 0.96036 0.96155 0.93080 0.90148 0.90094 0.88986 0.85154 0.85391 0.85069 0.85163 0.87725 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.10 37.16 0.34 -2.01 16 2 C -0.11 -1.84 5.02 -26.73 -0.13 -1.97 16 3 C -0.08 -1.32 1.69 -90.63 -0.15 -1.48 16 4 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.02 0.52 4.16 -27.89 -0.12 0.40 16 6 C -0.51 -13.40 8.33 -34.44 -0.29 -13.69 16 7 H 0.06 1.42 7.08 -52.49 -0.37 1.04 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 10 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 14 C -0.11 -1.47 1.00 -91.05 -0.09 -1.56 16 15 C -0.11 -1.29 4.68 -26.92 -0.13 -1.42 16 16 C -0.60 -5.75 6.35 37.18 0.24 -5.52 16 17 S 2.41 28.09 5.31 -107.50 -0.57 27.52 16 18 O -0.96 -13.91 18.10 -57.81 -1.05 -14.96 16 19 O -0.94 -14.07 17.94 -57.81 -1.04 -15.10 16 20 C -0.59 -6.55 6.35 37.18 0.24 -6.31 16 21 C -0.11 -1.54 4.94 -26.92 -0.13 -1.68 16 22 H 0.04 0.59 6.26 -51.93 -0.33 0.27 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.22 6.41 -51.93 -0.33 0.89 16 25 H 0.04 0.59 6.45 -51.93 -0.34 0.25 16 26 H 0.07 1.37 6.81 -51.92 -0.35 1.02 16 27 H 0.02 0.52 6.34 -51.92 -0.33 0.19 16 28 H 0.02 0.49 6.02 -51.93 -0.31 0.18 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 30 H 0.08 1.08 6.47 -51.93 -0.34 0.74 16 31 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 32 H 0.09 1.02 5.78 -51.93 -0.30 0.72 16 33 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.65 5.89 -51.93 -0.31 1.34 16 38 H 0.08 1.06 8.01 -51.93 -0.42 0.64 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -32.57 299.26 -8.56 -41.14 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.81 Total: -0.31 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: -0.33 Total: -33.76 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.74 Total: -24.94 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -2.08 Total: -30.06 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 28.09 SS G_CDS: -0.57 Total: 27.52 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.57 -8.56 -41.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260526814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.749 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds