Wall clock time and date at job start Mon Mar 30 2020 06:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47346 * 2 1 4 4 H 1.09001 * 109.46903 * 185.63554 * 3 2 1 5 5 C 1.52992 * 109.47700 * 65.63748 * 3 2 1 6 6 C 1.50696 * 109.47516 * 64.99748 * 5 3 2 7 7 H 1.07999 * 119.99571 * 359.97438 * 6 5 3 8 8 C 1.37877 * 120.00468 * 179.73127 * 6 5 3 9 9 N 1.31514 * 119.99782 * 0.27024 * 8 6 5 10 10 Si 1.86795 * 120.00373 * 180.27778 * 8 6 5 11 11 H 1.48496 * 109.47256 * 89.99516 * 10 8 6 12 12 H 1.48500 * 109.47367 * 210.00026 * 10 8 6 13 13 H 1.48506 * 109.46870 * 329.99528 * 10 8 6 14 14 C 1.52996 * 109.46982 * 305.63101 * 3 2 1 15 15 C 1.52587 * 109.24536 * 303.19897 * 14 3 2 16 16 C 1.53051 * 109.97898 * 169.67040 * 15 14 3 17 17 S 1.81673 * 108.96732 * 63.70829 * 16 15 14 18 18 O 1.42094 * 108.66690 * 191.35398 * 17 16 15 19 19 O 1.42110 * 108.66158 * 60.00982 * 17 16 15 20 20 C 1.81673 * 101.30648 * 305.68406 * 17 16 15 21 21 C 1.52586 * 109.24412 * 182.08120 * 14 3 2 22 22 H 1.09001 * 109.46958 * 61.71468 * 1 2 3 23 23 H 1.09000 * 109.47324 * 181.71941 * 1 2 3 24 24 H 1.08996 * 109.47225 * 301.71944 * 1 2 3 25 25 H 1.08998 * 109.47103 * 239.99030 * 2 1 3 26 26 H 1.09009 * 109.46572 * 119.99667 * 2 1 3 27 27 H 1.09008 * 109.46913 * 304.99955 * 5 3 2 28 28 H 1.08997 * 109.47784 * 185.00359 * 5 3 2 29 29 H 0.96998 * 120.00244 * 179.97438 * 9 8 6 30 30 H 1.08999 * 109.23864 * 62.64278 * 14 3 2 31 31 H 1.08992 * 109.38777 * 289.86990 * 15 14 3 32 32 H 1.09005 * 109.38545 * 49.55923 * 15 14 3 33 33 H 1.09002 * 109.58803 * 303.85696 * 16 15 14 34 34 H 1.08997 * 109.55290 * 183.54007 * 16 15 14 35 35 H 1.09001 * 109.54728 * 294.43917 * 20 17 16 36 36 H 1.09000 * 109.55381 * 174.15254 * 20 17 16 37 37 H 1.08995 * 109.38800 * 310.44698 * 21 14 3 38 38 H 1.09001 * 109.38239 * 70.13157 * 21 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1254 1.4440 -0.1009 5 6 1.6491 2.1217 1.3139 6 6 2.3600 1.4475 2.4590 7 1 3.0239 0.6173 2.2685 8 6 2.1668 1.8938 3.7491 9 7 1.3579 2.9046 3.9810 10 14 3.0540 1.0631 5.1676 11 1 4.3593 1.7335 5.3956 12 1 2.2253 1.1623 6.3959 13 1 3.2826 -0.3669 4.8389 14 6 1.4178 2.2033 -1.1724 15 6 1.7446 1.4768 -2.4738 16 6 0.9256 2.0688 -3.6232 17 16 1.4151 3.8015 -3.8656 18 8 0.4823 4.4193 -4.7417 19 8 2.8002 3.8430 -4.1806 20 6 1.1783 4.4756 -2.1953 21 6 1.9694 3.6258 -1.1983 22 1 -0.3633 0.4870 -0.9050 23 1 -0.3634 -1.0272 0.0308 24 1 -0.3633 0.5403 0.8741 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.5715 2.0417 1.4577 28 1 1.9338 3.1732 1.2782 29 1 1.2217 3.2184 4.8887 30 1 0.3361 2.2399 -1.0433 31 1 2.8069 1.5856 -2.6920 32 1 1.5053 0.4186 -2.3674 33 1 -0.1355 2.0205 -3.3787 34 1 1.1171 1.5047 -4.5360 35 1 0.1194 4.4487 -1.9379 36 1 1.5369 5.5044 -2.1628 37 1 1.8866 4.0641 -0.2038 38 1 3.0178 3.6018 -1.4953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260526814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:45 Heat of formation + Delta-G solvation = -123.944129 kcal Electronic energy + Delta-G solvation = -18660.163734 eV Core-core repulsion = 15820.889731 eV Total energy + Delta-G solvation = -2839.274003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93357 -37.97424 -37.02053 -35.69460 -34.24444 -32.78320 -30.52280 -28.77873 -25.80748 -25.10292 -23.66700 -22.17258 -19.74352 -19.70188 -18.43618 -17.71972 -17.20812 -16.75613 -16.53121 -15.72771 -15.68770 -15.15353 -15.02195 -14.40272 -13.98906 -13.80169 -13.69148 -13.23533 -13.18871 -13.03036 -13.02603 -12.99489 -12.68218 -12.48483 -12.45829 -12.24766 -12.04229 -11.87633 -11.40933 -11.31844 -11.20701 -10.97371 -10.69878 -10.51015 -10.35213 -8.13108 -6.18957 -0.82959 1.40260 1.41427 1.50802 1.81662 2.44223 2.77222 3.05022 3.21412 3.69420 3.76377 3.81644 3.90144 4.14332 4.33355 4.40625 4.44737 4.53895 4.57242 4.79879 4.84202 4.91407 4.99228 5.06643 5.17726 5.21144 5.23872 5.30297 5.41423 5.50094 5.60945 5.68902 5.78663 5.96803 6.04683 6.38990 6.98800 7.48142 8.98109 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.005268 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.166590 B = 5314.330864 C = 5668.406064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.070 4.070 4 H 0.052 0.948 5 C 0.027 3.973 6 C -0.523 4.523 7 H 0.056 0.944 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.948 3.052 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.265 1.265 14 C -0.102 4.102 15 C -0.112 4.112 16 C -0.580 4.580 17 S 2.421 3.579 18 O -0.985 6.985 19 O -0.979 6.979 20 C -0.591 4.591 21 C -0.115 4.115 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.032 0.968 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.002 0.998 28 H -0.001 1.001 29 H 0.259 0.741 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.075 0.925 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 -2.915 -14.053 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.088 4.088 4 H 0.071 0.929 5 C -0.010 4.010 6 C -0.561 4.561 7 H 0.074 0.926 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.774 3.226 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.190 1.190 14 C -0.120 4.120 15 C -0.150 4.150 16 C -0.712 4.712 17 S 2.608 3.392 18 O -0.983 6.983 19 O -0.976 6.976 20 C -0.722 4.722 21 C -0.154 4.154 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.020 0.980 28 H 0.017 0.983 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.094 0.906 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.098 -2.360 -14.720 15.055 hybrid contribution 0.150 -0.259 2.058 2.079 sum -1.948 -2.619 -12.662 13.076 Atomic orbital electron populations 1.21822 0.95997 1.01167 1.01636 1.21478 0.96293 0.95959 1.01043 1.21041 0.98756 0.95185 0.93864 0.92902 1.19181 0.95426 0.94626 0.91761 1.21704 1.25993 1.15717 0.92669 0.92592 1.25794 0.96315 0.95839 1.01650 1.70070 1.38658 1.27740 1.21013 0.85696 0.78479 0.79341 0.79036 1.20351 1.21306 1.18963 1.21413 1.01935 0.93588 0.95093 1.21509 1.00110 1.02997 0.90386 1.30042 1.12101 1.20399 1.08675 1.07677 0.74180 0.79830 0.77475 1.93524 1.65213 1.76047 1.63476 1.93521 1.33618 1.87058 1.83450 1.30131 1.11263 1.11225 1.19530 1.21440 0.99418 0.94634 0.99878 0.90827 0.92649 0.94859 0.90462 0.93897 0.97965 0.98297 0.93230 0.89219 0.89980 0.87346 0.82404 0.82600 0.83153 0.84260 0.90621 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.10 71.98 0.66 -3.62 16 2 C -0.11 -3.44 5.02 30.59 0.15 -3.29 16 3 C -0.07 -2.43 1.69 -10.80 -0.02 -2.44 16 4 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 5 C 0.03 1.26 4.16 29.84 0.12 1.38 16 6 C -0.52 -27.84 8.33 25.60 0.21 -27.63 16 7 H 0.06 2.90 7.08 -2.91 -0.02 2.88 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 10 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 C -0.10 -2.66 1.00 -11.07 -0.01 -2.67 16 15 C -0.11 -2.17 4.68 30.47 0.14 -2.02 16 16 C -0.58 -8.58 6.35 72.00 0.46 -8.13 16 17 S 2.42 51.42 5.31 -56.49 -0.30 51.12 16 18 O -0.99 -26.84 18.10 -127.40 -2.31 -29.14 16 19 O -0.98 -28.04 17.94 -127.40 -2.29 -30.32 16 20 C -0.59 -12.23 6.35 72.00 0.46 -11.78 16 21 C -0.12 -3.12 4.94 30.47 0.15 -2.97 16 22 H 0.07 1.66 6.26 -2.39 -0.01 1.65 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.03 1.17 6.41 -2.39 -0.02 1.16 16 25 H 0.08 1.88 6.45 -2.39 -0.02 1.86 16 26 H 0.04 1.58 6.81 -2.38 -0.02 1.56 16 27 H 0.00 0.10 6.34 -2.38 -0.02 0.09 16 28 H 0.00 -0.06 6.02 -2.39 -0.01 -0.07 16 29 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.09 2.17 6.47 -2.39 -0.02 2.16 16 31 H 0.08 1.63 8.01 -2.39 -0.02 1.61 16 32 H 0.11 1.83 5.78 -2.38 -0.01 1.81 16 33 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.16 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.15 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.08 2.49 5.89 -2.39 -0.01 2.48 16 38 H 0.08 2.09 8.01 -2.39 -0.02 2.07 16 Total: -1.00 -71.94 299.26 1.25 -70.70 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.04 Total: 9.52 kcal Atomic # 6 Polarization: -65.42 SS G_CDS: 2.79 Total: -62.64 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.28 Total: -54.72 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -4.59 Total: -59.47 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 51.42 SS G_CDS: -0.30 Total: 51.12 kcal Total: -71.94 1.25 -70.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260526814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.248 kcal (2) G-P(sol) polarization free energy of solvation -71.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds