Wall clock time and date at job start Mon Mar 30 2020 06:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46845 * 2 1 4 4 C 1.52997 * 109.46919 * 239.99816 * 2 1 3 5 5 C 1.50706 * 109.47078 * 63.43734 * 4 2 1 6 6 H 1.07995 * 120.00095 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99537 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00206 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99762 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47178 * 119.99993 * 9 7 5 12 12 H 1.48502 * 109.47209 * 240.00474 * 9 7 5 13 13 C 1.52991 * 109.46826 * 119.99922 * 2 1 3 14 14 H 1.08998 * 108.26374 * 56.80821 * 13 2 1 15 15 C 1.53370 * 108.34848 * 299.51380 * 13 2 1 16 16 C 1.51507 * 107.13882 * 148.37764 * 15 13 2 17 17 C 1.52861 * 109.69400 * 101.94342 * 16 15 13 18 18 C 1.53741 * 115.58055 * 317.94004 * 17 16 15 19 19 S 1.79817 * 112.95434 * 315.61317 * 18 17 16 20 20 O 1.42101 * 108.63718 * 332.93982 * 19 18 17 21 21 O 1.42096 * 108.65412 * 201.79767 * 19 18 17 22 22 C 1.45207 * 108.20586 * 174.03125 * 13 2 1 23 23 H 1.08999 * 109.47008 * 307.34591 * 1 2 3 24 24 H 1.08997 * 109.46603 * 67.34266 * 1 2 3 25 25 H 1.08996 * 109.47270 * 187.34338 * 1 2 3 26 26 H 1.09003 * 109.47073 * 183.43709 * 4 2 1 27 27 H 1.08996 * 109.47040 * 303.43539 * 4 2 1 28 28 H 0.97004 * 119.99732 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.91650 * 28.97074 * 15 13 2 30 30 H 1.08997 * 109.98624 * 267.82434 * 15 13 2 31 31 H 1.09002 * 109.43399 * 341.87727 * 16 15 13 32 32 H 1.09000 * 109.40035 * 221.99030 * 16 15 13 33 33 H 1.08997 * 108.22906 * 79.45943 * 17 16 15 34 34 H 1.08996 * 108.23521 * 196.41439 * 17 16 15 35 35 H 1.09005 * 108.80020 * 76.66556 * 18 17 16 36 36 H 1.08999 * 108.80074 * 194.89822 * 18 17 16 37 37 H 1.09002 * 109.32345 * 306.76010 * 22 13 2 38 38 H 1.08997 * 109.32642 * 66.40676 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6084 0.0366 -2.4782 6 1 1.0281 0.9419 -2.3783 7 6 1.9545 -0.4259 -3.7302 8 7 2.6608 -1.5286 -3.8518 9 14 1.4201 0.5139 -5.2536 10 1 0.6421 1.7121 -4.8485 11 1 2.6195 0.9387 -6.0192 12 1 0.5744 -0.3617 -6.1041 13 6 2.0400 -0.7212 1.2492 14 1 1.6196 -1.7268 1.2586 15 6 1.5248 0.0288 2.4838 16 6 1.3222 -0.9990 3.5783 17 6 2.4861 -0.9348 4.5671 18 6 3.8813 -0.7776 3.9408 19 16 4.1398 -1.8553 2.5248 20 8 3.3123 -3.0014 2.6693 21 8 5.5373 -2.0278 2.3340 22 6 3.4846 -0.8307 1.1519 23 1 -0.3633 0.6234 0.8170 24 1 -0.3632 0.3959 -0.9484 25 1 -0.3633 -1.0192 0.1313 26 1 3.1283 -0.7750 -1.2190 27 1 1.6273 -1.7296 -1.2805 28 1 2.9045 -1.8537 -4.7327 29 1 0.5781 0.5173 2.2532 30 1 2.2574 0.7705 2.8018 31 1 1.2759 -1.9946 3.1369 32 1 0.3893 -0.7909 4.1022 33 1 2.3170 -0.0930 5.2386 34 1 2.4799 -1.8487 5.1610 35 1 4.0099 0.2577 3.6248 36 1 4.6332 -1.0079 4.6956 37 1 3.7482 -1.2917 0.2000 38 1 3.9262 0.1644 1.2053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260670046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:18 Heat of formation + Delta-G solvation = -92.127976 kcal Electronic energy + Delta-G solvation = -18788.326272 eV Core-core repulsion = 15950.431922 eV Total energy + Delta-G solvation = -2837.894351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.83692 -36.71265 -35.79881 -35.16983 -32.75903 -30.69207 -29.72456 -27.19500 -25.13144 -23.87213 -22.08431 -20.42425 -19.08878 -18.48440 -16.85409 -16.54880 -16.06557 -15.49324 -15.25724 -14.57824 -14.35681 -13.88862 -13.55419 -13.33770 -13.00167 -12.40549 -12.23411 -12.17260 -11.89996 -11.77819 -11.70726 -11.41677 -11.19932 -11.01858 -10.93071 -10.87455 -10.56102 -10.51026 -10.19018 -10.14176 -9.79994 -9.63866 -9.06780 -8.91729 -8.35873 -6.01910 -4.03389 0.20993 2.88332 3.29289 3.37396 3.40190 3.82498 4.04233 4.43885 4.52016 4.60381 4.79205 4.93146 5.03955 5.11592 5.33666 5.39843 5.47046 5.53794 5.65251 5.79435 5.95089 5.95995 6.03647 6.13030 6.27338 6.34145 6.38817 6.52418 6.57425 6.93517 7.08035 7.13072 7.62023 7.77891 7.97073 8.40616 9.02846 9.60377 11.09446 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.030187 B = 0.005855 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.313921 B = 4781.164999 C = 5390.686688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 H 0.059 0.941 4 C 0.018 3.982 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C -0.088 4.088 14 H 0.086 0.914 15 C -0.135 4.135 16 C -0.150 4.150 17 C -0.088 4.088 18 C -0.623 4.623 19 S 2.402 3.598 20 O -0.937 6.937 21 O -0.953 6.953 22 C -0.568 4.568 23 H 0.035 0.965 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.021 0.979 27 H 0.019 0.981 28 H 0.260 0.740 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.156 0.844 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 3.446 16.195 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.095 4.095 3 H 0.077 0.923 4 C -0.019 4.019 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.107 4.107 14 H 0.104 0.896 15 C -0.173 4.173 16 C -0.188 4.188 17 C -0.127 4.127 18 C -0.751 4.751 19 S 2.586 3.414 20 O -0.934 6.934 21 O -0.950 6.950 22 C -0.698 4.698 23 H 0.054 0.946 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.173 0.827 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.246 2.457 16.100 16.289 hybrid contribution -0.332 1.334 -0.900 1.643 sum -0.578 3.791 15.200 15.677 Atomic orbital electron populations 1.21856 0.96129 1.00551 1.00993 1.21273 0.95190 0.99059 0.94016 0.92290 1.19333 0.96136 0.95829 0.90582 1.21266 1.33705 1.09527 0.90893 0.92483 1.25027 0.95294 0.95063 0.99150 1.69962 1.38314 1.21721 1.23442 0.86583 0.78372 0.79963 0.83346 1.19810 1.21099 1.21066 1.19808 0.91643 1.01890 0.97370 0.89622 1.21895 1.03212 0.97964 0.94180 1.21909 0.97922 1.01771 0.97173 1.21069 0.89663 1.03203 0.98760 1.30381 1.06333 1.17876 1.20480 1.08548 0.75372 0.78222 0.79244 1.93535 1.69370 1.45260 1.85230 1.93566 1.30729 1.85585 1.85149 1.29020 1.06709 1.15208 1.18904 0.94565 0.91559 0.93550 0.96106 0.96308 0.93017 0.89438 0.91468 0.89015 0.90610 0.91155 0.91203 0.85172 0.85406 0.82682 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.66 37.16 0.32 -2.06 16 2 C -0.08 -1.38 1.90 -90.62 -0.17 -1.56 16 3 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.02 0.43 4.01 -27.88 -0.11 0.32 16 5 C -0.52 -13.89 8.29 -34.44 -0.29 -14.17 16 6 H 0.06 1.49 6.98 -52.49 -0.37 1.13 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C -0.09 -1.31 1.15 -94.09 -0.11 -1.42 16 14 H 0.09 1.36 6.57 -51.93 -0.34 1.02 16 15 C -0.14 -1.54 4.98 -27.29 -0.14 -1.68 16 16 C -0.15 -1.58 5.46 -27.56 -0.15 -1.73 16 17 C -0.09 -0.82 5.30 -26.42 -0.14 -0.96 16 18 C -0.62 -5.86 5.54 37.54 0.21 -5.65 16 19 S 2.40 32.75 5.16 -107.50 -0.55 32.20 16 20 O -0.94 -15.41 15.38 -57.83 -0.89 -16.30 16 21 O -0.95 -16.30 18.10 -57.83 -1.05 -17.35 16 22 C -0.57 -8.18 4.83 33.50 0.16 -8.02 16 23 H 0.04 0.51 6.25 -51.93 -0.32 0.18 16 24 H 0.07 1.27 6.65 -51.93 -0.35 0.93 16 25 H 0.05 0.79 8.13 -51.93 -0.42 0.36 16 26 H 0.02 0.52 5.92 -51.93 -0.31 0.22 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.09 0.98 5.60 -51.93 -0.29 0.69 16 30 H 0.07 0.64 6.33 -51.93 -0.33 0.31 16 31 H 0.09 1.12 5.53 -51.93 -0.29 0.83 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.13 0.94 7.06 -51.71 -0.37 0.58 16 36 H 0.13 1.01 8.14 -51.62 -0.42 0.59 16 37 H 0.16 2.64 5.55 -51.93 -0.29 2.35 16 38 H 0.13 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 294.23 15.07 4.43 4.43 Total: -1.00 -33.61 294.23 -8.61 -42.22 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.76 Total: -0.31 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: -0.51 Total: -35.45 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.74 Total: -25.73 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.94 Total: -33.64 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 32.75 SS G_CDS: -0.55 Total: 32.20 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.61 -8.61 -42.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260670046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.908 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds