Wall clock time and date at job start Mon Mar 30 2020 06:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46845 * 2 1 4 4 C 1.52997 * 109.46919 * 239.99816 * 2 1 3 5 5 C 1.50706 * 109.47078 * 63.43734 * 4 2 1 6 6 H 1.07995 * 120.00095 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99537 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00206 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99762 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47178 * 119.99993 * 9 7 5 12 12 H 1.48502 * 109.47209 * 240.00474 * 9 7 5 13 13 C 1.52991 * 109.46826 * 119.99922 * 2 1 3 14 14 H 1.08998 * 108.26374 * 56.80821 * 13 2 1 15 15 C 1.53370 * 108.34848 * 299.51380 * 13 2 1 16 16 C 1.51507 * 107.13882 * 148.37764 * 15 13 2 17 17 C 1.52861 * 109.69400 * 101.94342 * 16 15 13 18 18 C 1.53741 * 115.58055 * 317.94004 * 17 16 15 19 19 S 1.79817 * 112.95434 * 315.61317 * 18 17 16 20 20 O 1.42101 * 108.63718 * 332.93982 * 19 18 17 21 21 O 1.42096 * 108.65412 * 201.79767 * 19 18 17 22 22 C 1.45207 * 108.20586 * 174.03125 * 13 2 1 23 23 H 1.08999 * 109.47008 * 307.34591 * 1 2 3 24 24 H 1.08997 * 109.46603 * 67.34266 * 1 2 3 25 25 H 1.08996 * 109.47270 * 187.34338 * 1 2 3 26 26 H 1.09003 * 109.47073 * 183.43709 * 4 2 1 27 27 H 1.08996 * 109.47040 * 303.43539 * 4 2 1 28 28 H 0.97004 * 119.99732 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.91650 * 28.97074 * 15 13 2 30 30 H 1.08997 * 109.98624 * 267.82434 * 15 13 2 31 31 H 1.09002 * 109.43399 * 341.87727 * 16 15 13 32 32 H 1.09000 * 109.40035 * 221.99030 * 16 15 13 33 33 H 1.08997 * 108.22906 * 79.45943 * 17 16 15 34 34 H 1.08996 * 108.23521 * 196.41439 * 17 16 15 35 35 H 1.09005 * 108.80020 * 76.66556 * 18 17 16 36 36 H 1.08999 * 108.80074 * 194.89822 * 18 17 16 37 37 H 1.09002 * 109.32345 * 306.76010 * 22 13 2 38 38 H 1.08997 * 109.32642 * 66.40676 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6084 0.0366 -2.4782 6 1 1.0281 0.9419 -2.3783 7 6 1.9545 -0.4259 -3.7302 8 7 2.6608 -1.5286 -3.8518 9 14 1.4201 0.5139 -5.2536 10 1 0.6421 1.7121 -4.8485 11 1 2.6195 0.9387 -6.0192 12 1 0.5744 -0.3617 -6.1041 13 6 2.0400 -0.7212 1.2492 14 1 1.6196 -1.7268 1.2586 15 6 1.5248 0.0288 2.4838 16 6 1.3222 -0.9990 3.5783 17 6 2.4861 -0.9348 4.5671 18 6 3.8813 -0.7776 3.9408 19 16 4.1398 -1.8553 2.5248 20 8 3.3123 -3.0014 2.6693 21 8 5.5373 -2.0278 2.3340 22 6 3.4846 -0.8307 1.1519 23 1 -0.3633 0.6234 0.8170 24 1 -0.3632 0.3959 -0.9484 25 1 -0.3633 -1.0192 0.1313 26 1 3.1283 -0.7750 -1.2190 27 1 1.6273 -1.7296 -1.2805 28 1 2.9045 -1.8537 -4.7327 29 1 0.5781 0.5173 2.2532 30 1 2.2574 0.7705 2.8018 31 1 1.2759 -1.9946 3.1369 32 1 0.3893 -0.7909 4.1022 33 1 2.3170 -0.0930 5.2386 34 1 2.4799 -1.8487 5.1610 35 1 4.0099 0.2577 3.6248 36 1 4.6332 -1.0079 4.6956 37 1 3.7482 -1.2917 0.2000 38 1 3.9262 0.1644 1.2053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260670046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:18 Heat of formation + Delta-G solvation = -115.652283 kcal Electronic energy + Delta-G solvation = -18789.346363 eV Core-core repulsion = 15950.431922 eV Total energy + Delta-G solvation = -2838.914441 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00543 -37.95113 -37.00251 -36.32721 -34.62061 -32.14893 -30.70611 -28.88570 -26.21810 -25.50467 -23.45866 -21.35392 -20.54685 -19.56646 -18.63290 -17.64777 -17.42533 -16.71180 -16.48522 -16.13943 -15.45871 -15.02483 -14.85759 -14.74562 -14.25247 -13.77679 -13.41835 -13.34207 -13.25050 -13.09478 -12.97624 -12.91360 -12.69851 -12.46869 -12.41188 -12.22248 -11.92629 -11.74746 -11.39209 -11.31022 -11.25594 -10.98208 -10.80355 -10.54580 -10.44554 -8.17296 -6.25895 -0.86114 1.38701 1.39483 1.51754 1.85248 2.41471 2.79616 3.06144 3.16559 3.63757 3.78030 3.89827 3.95003 4.04958 4.17748 4.32599 4.52047 4.64934 4.65857 4.77551 4.88190 4.90914 4.92629 5.10646 5.19824 5.24836 5.30742 5.34976 5.39502 5.51524 5.57829 5.61946 5.69860 5.88922 5.93619 6.31245 6.92335 7.42478 8.94788 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.030187 B = 0.005855 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.313921 B = 4781.164999 C = 5390.686688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 H 0.068 0.932 4 C 0.018 3.982 5 C -0.525 4.525 6 H 0.065 0.935 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.283 1.283 13 C -0.081 4.081 14 H 0.063 0.937 15 C -0.129 4.129 16 C -0.154 4.154 17 C -0.094 4.094 18 C -0.594 4.594 19 S 2.402 3.598 20 O -0.975 6.975 21 O -0.996 6.996 22 C -0.579 4.579 23 H 0.078 0.922 24 H 0.041 0.959 25 H 0.038 0.962 26 H 0.002 0.998 27 H -0.019 1.019 28 H 0.260 0.740 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.114 0.886 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 6.355 18.734 19.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 H 0.086 0.914 4 C -0.019 4.019 5 C -0.563 4.563 6 H 0.083 0.917 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.182 1.182 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.100 4.100 14 H 0.081 0.919 15 C -0.166 4.166 16 C -0.191 4.191 17 C -0.133 4.133 18 C -0.727 4.727 19 S 2.591 3.409 20 O -0.973 6.973 21 O -0.993 6.993 22 C -0.708 4.708 23 H 0.097 0.903 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.020 0.980 27 H -0.001 1.001 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.184 0.816 36 H 0.173 0.827 37 H 0.133 0.867 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.054 5.346 18.595 19.377 hybrid contribution -0.096 0.419 -1.623 1.679 sum -1.149 5.765 16.971 17.960 Atomic orbital electron populations 1.21819 0.95108 1.00904 1.01376 1.21158 0.96050 0.98913 0.92934 0.91385 1.19286 0.95010 0.94371 0.93201 1.21749 1.32910 1.09661 0.91994 0.91725 1.25969 0.95505 0.96010 1.02781 1.70116 1.40064 1.23677 1.24125 0.85483 0.78026 0.78900 0.79150 1.18241 1.20758 1.20926 1.19782 0.91573 1.00961 0.97708 0.91872 1.21917 1.04222 0.98322 0.92171 1.21909 0.99886 1.00031 0.97296 1.21202 0.88384 1.05009 0.98689 1.30124 1.07796 1.17594 1.17146 1.08233 0.73813 0.78511 0.80304 1.93485 1.69681 1.48112 1.85995 1.93508 1.32764 1.86628 1.86409 1.29004 1.06943 1.16787 1.18058 0.90314 0.93949 0.94274 0.97964 1.00088 0.93089 0.88693 0.88282 0.91696 0.88308 0.87472 0.91036 0.81584 0.82711 0.86740 0.82690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.66 71.98 0.62 -3.93 16 2 C -0.07 -2.60 1.90 -10.79 -0.02 -2.62 16 3 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 4 C 0.02 0.93 4.01 29.85 0.12 1.04 16 5 C -0.53 -29.05 8.29 25.60 0.21 -28.83 16 6 H 0.06 3.39 6.98 -2.91 -0.02 3.37 16 7 C -0.01 -0.34 5.46 84.66 0.46 0.13 16 8 N -0.94 -58.00 13.29 21.45 0.28 -57.71 16 9 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C -0.08 -2.37 1.15 -13.04 -0.01 -2.39 16 14 H 0.06 2.12 6.57 -2.39 -0.02 2.10 16 15 C -0.13 -2.45 4.98 30.23 0.15 -2.30 16 16 C -0.15 -2.69 5.46 30.06 0.16 -2.53 16 17 C -0.09 -1.27 5.30 30.80 0.16 -1.11 16 18 C -0.59 -8.46 5.54 72.23 0.40 -8.06 16 19 S 2.40 64.96 5.16 -56.49 -0.29 64.67 16 20 O -0.98 -33.23 15.38 -127.37 -1.96 -35.19 16 21 O -1.00 -34.67 18.10 -127.37 -2.31 -36.97 16 22 C -0.58 -16.89 4.83 69.61 0.34 -16.56 16 23 H 0.08 1.98 6.25 -2.39 -0.01 1.96 16 24 H 0.04 1.61 6.65 -2.39 -0.02 1.59 16 25 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 26 H 0.00 0.12 5.92 -2.39 -0.01 0.11 16 27 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 28 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 29 H 0.09 1.69 5.60 -2.39 -0.01 1.67 16 30 H 0.10 1.28 6.33 -2.39 -0.02 1.26 16 31 H 0.06 1.53 5.53 -2.39 -0.01 1.51 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.17 1.31 7.06 -2.52 -0.02 1.30 16 36 H 0.15 1.61 8.14 -2.58 -0.02 1.59 16 37 H 0.11 4.30 5.55 -2.39 -0.01 4.29 16 38 H 0.16 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -78.03 294.23 1.39 -76.64 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.04 Total: 9.29 kcal Atomic # 6 Polarization: -69.76 SS G_CDS: 2.60 Total: -67.16 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.28 Total: -57.71 kcal Atomic # 8 Polarization: -67.90 SS G_CDS: -4.26 Total: -72.17 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 64.96 SS G_CDS: -0.29 Total: 64.67 kcal Total: -78.03 1.39 -76.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260670046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.015 kcal (2) G-P(sol) polarization free energy of solvation -78.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds