Wall clock time and date at job start Mon Mar 30 2020 06:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47450 * 2 1 4 4 C 1.53003 * 109.47250 * 120.00165 * 2 1 3 5 5 C 1.50700 * 109.46940 * 294.50814 * 4 2 1 6 6 H 1.08003 * 120.00305 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99837 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00081 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00351 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47091 * 89.99924 * 9 7 5 11 11 H 1.48496 * 109.47631 * 210.00168 * 9 7 5 12 12 H 1.48497 * 109.47293 * 330.00493 * 9 7 5 13 13 C 1.53005 * 109.47103 * 239.99942 * 2 1 3 14 14 H 1.08997 * 108.25717 * 291.91599 * 13 2 1 15 15 C 1.53367 * 108.34582 * 174.61943 * 13 2 1 16 16 C 1.51508 * 107.13575 * 148.19289 * 15 13 2 17 17 C 1.52858 * 109.69001 * 101.94192 * 16 15 13 18 18 C 1.53742 * 115.58587 * 317.94372 * 17 16 15 19 19 S 1.79821 * 112.94890 * 315.61224 * 18 17 16 20 20 O 1.42110 * 108.63486 * 332.93982 * 19 18 17 21 21 O 1.42098 * 108.65916 * 201.80471 * 19 18 17 22 22 C 1.45196 * 108.34478 * 49.04642 * 13 2 1 23 23 H 1.09004 * 109.46886 * 59.99688 * 1 2 3 24 24 H 1.09000 * 109.47450 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46925 * 300.00280 * 1 2 3 26 26 H 1.08999 * 109.46672 * 54.50782 * 4 2 1 27 27 H 1.08996 * 109.47095 * 174.50894 * 4 2 1 28 28 H 0.96996 * 120.00166 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.91956 * 28.78810 * 15 13 2 30 30 H 1.08997 * 109.98786 * 267.63892 * 15 13 2 31 31 H 1.08999 * 109.43361 * 341.87873 * 16 15 13 32 32 H 1.08993 * 109.43555 * 222.01417 * 16 15 13 33 33 H 1.09000 * 108.22853 * 79.46482 * 17 16 15 34 34 H 1.08995 * 108.23455 * 196.41417 * 17 16 15 35 35 H 1.08994 * 108.80115 * 76.66152 * 18 17 16 36 36 H 1.08999 * 108.79672 * 194.90407 * 18 17 16 37 37 H 1.09008 * 109.33085 * 306.86428 * 22 13 2 38 38 H 1.08999 * 109.33147 * 66.34063 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6517 0.0633 2.4759 6 1 1.0971 0.9845 2.3747 7 6 2.0046 -0.3949 3.7275 8 7 1.6654 0.2895 4.7981 9 14 2.9633 -1.9885 3.9028 10 1 4.4190 -1.6964 3.8720 11 1 2.6156 -2.6361 5.1931 12 1 2.6176 -2.8999 2.7825 13 6 2.0399 -0.7213 -1.2493 14 1 1.7895 -1.7783 -1.1595 15 6 3.5673 -0.5891 -1.2933 16 6 4.1051 -1.8429 -1.9523 17 6 4.4754 -1.5430 -3.4047 18 6 3.4774 -0.6643 -4.1765 19 16 1.7658 -1.1454 -3.9077 20 8 1.7280 -2.5295 -3.5876 21 8 0.9822 -0.6619 -4.9900 22 6 1.3406 -0.1859 -2.4036 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.5985 -1.7166 1.2997 27 1 3.1255 -0.8072 1.2014 28 1 1.9139 -0.0327 5.6786 29 1 3.9619 -0.5031 -0.2809 30 1 3.8487 0.2873 -1.8771 31 1 3.3431 -2.6219 -1.9257 32 1 4.9901 -2.1838 -1.4153 33 1 5.4453 -1.0458 -3.4136 34 1 4.5755 -2.4907 -3.9338 35 1 3.6063 0.3717 -3.8634 36 1 3.6964 -0.7369 -5.2418 37 1 0.2656 -0.2416 -2.2320 38 1 1.6268 0.8560 -2.5476 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260670056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:24 Heat of formation + Delta-G solvation = -88.722454 kcal Electronic energy + Delta-G solvation = -18825.099058 eV Core-core repulsion = 15987.352381 eV Total energy + Delta-G solvation = -2837.746676 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.95225 -36.90794 -35.99678 -35.23937 -32.84048 -30.86551 -29.85720 -27.32353 -25.81957 -23.65234 -21.71882 -20.48498 -19.19264 -18.66016 -17.09465 -16.71126 -16.44099 -15.62165 -15.32976 -14.59382 -14.24965 -14.06720 -13.74221 -13.19770 -13.17512 -12.71822 -12.43182 -12.24074 -12.07870 -12.04330 -11.87471 -11.59395 -11.35933 -11.08294 -11.04046 -10.80702 -10.58519 -10.48261 -10.21201 -10.08940 -9.77944 -9.68533 -9.32754 -9.04682 -8.53702 -6.05327 -4.02550 0.02148 2.67622 3.28629 3.37585 3.41212 3.62852 3.90489 4.42805 4.44055 4.49768 4.66687 4.81422 4.94148 5.03566 5.27046 5.29091 5.36606 5.45178 5.59368 5.73378 5.86462 5.89683 5.93880 6.02054 6.20754 6.28532 6.37216 6.40690 6.47356 6.78077 6.89301 7.01792 7.27084 7.43663 7.79198 8.52876 8.99907 9.57617 11.08043 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.006022 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.750880 B = 4648.769057 C = 5117.727588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 H 0.065 0.935 4 C -0.012 4.012 5 C -0.516 4.516 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.264 1.264 13 C -0.093 4.093 14 H 0.086 0.914 15 C -0.135 4.135 16 C -0.151 4.151 17 C -0.090 4.090 18 C -0.618 4.618 19 S 2.402 3.598 20 O -0.935 6.935 21 O -0.955 6.955 22 C -0.571 4.571 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.262 0.738 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.143 0.857 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.726 -1.699 -16.968 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 H 0.084 0.916 4 C -0.050 4.050 5 C -0.554 4.554 6 H 0.091 0.909 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.188 1.188 13 C -0.112 4.112 14 H 0.104 0.896 15 C -0.172 4.172 16 C -0.189 4.189 17 C -0.128 4.128 18 C -0.747 4.747 19 S 2.587 3.413 20 O -0.932 6.932 21 O -0.952 6.952 22 C -0.701 4.701 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.216 -2.299 -17.337 17.990 hybrid contribution 1.009 -0.085 0.624 1.189 sum 5.225 -2.384 -16.713 17.673 Atomic orbital electron populations 1.21930 0.96192 1.01220 1.00933 1.21095 0.95192 0.99245 0.93021 0.91609 1.19743 0.95843 0.96226 0.93145 1.21146 1.35839 1.09155 0.89221 0.90939 1.25027 0.95685 0.96864 0.95968 1.69912 1.47218 1.39196 0.98077 0.86842 0.80529 0.84659 0.77677 1.20389 1.21499 1.18812 1.19851 0.94659 1.02075 0.94616 0.89561 1.21875 0.94364 0.97362 1.03638 1.21914 1.03647 0.99423 0.93892 1.21097 0.97469 0.98684 0.95552 1.30326 1.23278 1.11422 1.09683 1.08501 0.77697 0.77239 0.77885 1.93553 1.85941 1.29333 1.84384 1.93566 1.66939 1.82614 1.52079 1.29036 1.11585 1.13673 1.15786 0.94279 0.93379 0.91171 0.96464 0.96504 0.92812 0.88554 0.91384 0.89125 0.90307 0.90925 0.91170 0.85055 0.85289 0.83921 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.25 37.15 0.31 -2.19 16 2 C -0.07 -1.15 1.86 -90.62 -0.17 -1.32 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 4 C -0.01 -0.27 3.36 -27.88 -0.09 -0.37 16 5 C -0.52 -13.95 8.96 -34.44 -0.31 -14.26 16 6 H 0.07 2.11 7.34 -52.48 -0.39 1.73 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 9 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 13 C -0.09 -1.29 1.18 -94.09 -0.11 -1.40 16 14 H 0.09 1.28 6.52 -51.93 -0.34 0.94 16 15 C -0.14 -1.67 4.98 -27.30 -0.14 -1.81 16 16 C -0.15 -1.71 5.46 -27.56 -0.15 -1.86 16 17 C -0.09 -0.82 5.30 -26.42 -0.14 -0.96 16 18 C -0.62 -5.21 5.54 37.54 0.21 -5.00 16 19 S 2.40 27.60 5.16 -107.50 -0.56 27.05 16 20 O -0.93 -13.68 15.37 -57.83 -0.89 -14.57 16 21 O -0.95 -13.82 18.10 -57.83 -1.05 -14.87 16 22 C -0.57 -6.44 4.70 33.49 0.16 -6.28 16 23 H 0.04 0.54 6.12 -51.93 -0.32 0.22 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.37 6.98 -51.93 -0.36 1.00 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 27 H 0.02 0.36 5.49 -51.93 -0.28 0.08 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.10 1.37 5.76 -51.93 -0.30 1.07 16 30 H 0.07 0.67 6.33 -51.93 -0.33 0.34 16 31 H 0.09 1.14 5.53 -51.93 -0.29 0.85 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.13 0.82 7.06 -51.72 -0.37 0.46 16 36 H 0.13 0.88 8.14 -51.62 -0.42 0.46 16 37 H 0.14 1.59 5.57 -51.92 -0.29 1.30 16 38 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 291.07 15.07 4.39 4.39 Total: -1.00 -33.91 291.07 -8.29 -42.20 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.76 Total: -0.44 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: -0.53 Total: -33.69 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -1.94 Total: -29.44 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 16 Polarization: 27.60 SS G_CDS: -0.56 Total: 27.05 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.91 -8.29 -42.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260670056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.522 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds