Wall clock time and date at job start Mon Mar 30 2020 06:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47450 * 2 1 4 4 C 1.53003 * 109.47250 * 120.00165 * 2 1 3 5 5 C 1.50700 * 109.46940 * 294.50814 * 4 2 1 6 6 H 1.08003 * 120.00305 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99837 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00081 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00351 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47091 * 89.99924 * 9 7 5 11 11 H 1.48496 * 109.47631 * 210.00168 * 9 7 5 12 12 H 1.48497 * 109.47293 * 330.00493 * 9 7 5 13 13 C 1.53005 * 109.47103 * 239.99942 * 2 1 3 14 14 H 1.08997 * 108.25717 * 291.91599 * 13 2 1 15 15 C 1.53367 * 108.34582 * 174.61943 * 13 2 1 16 16 C 1.51508 * 107.13575 * 148.19289 * 15 13 2 17 17 C 1.52858 * 109.69001 * 101.94192 * 16 15 13 18 18 C 1.53742 * 115.58587 * 317.94372 * 17 16 15 19 19 S 1.79821 * 112.94890 * 315.61224 * 18 17 16 20 20 O 1.42110 * 108.63486 * 332.93982 * 19 18 17 21 21 O 1.42098 * 108.65916 * 201.80471 * 19 18 17 22 22 C 1.45196 * 108.34478 * 49.04642 * 13 2 1 23 23 H 1.09004 * 109.46886 * 59.99688 * 1 2 3 24 24 H 1.09000 * 109.47450 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46925 * 300.00280 * 1 2 3 26 26 H 1.08999 * 109.46672 * 54.50782 * 4 2 1 27 27 H 1.08996 * 109.47095 * 174.50894 * 4 2 1 28 28 H 0.96996 * 120.00166 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.91956 * 28.78810 * 15 13 2 30 30 H 1.08997 * 109.98786 * 267.63892 * 15 13 2 31 31 H 1.08999 * 109.43361 * 341.87873 * 16 15 13 32 32 H 1.08993 * 109.43555 * 222.01417 * 16 15 13 33 33 H 1.09000 * 108.22853 * 79.46482 * 17 16 15 34 34 H 1.08995 * 108.23455 * 196.41417 * 17 16 15 35 35 H 1.08994 * 108.80115 * 76.66152 * 18 17 16 36 36 H 1.08999 * 108.79672 * 194.90407 * 18 17 16 37 37 H 1.09008 * 109.33085 * 306.86428 * 22 13 2 38 38 H 1.08999 * 109.33147 * 66.34063 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6517 0.0633 2.4759 6 1 1.0971 0.9845 2.3747 7 6 2.0046 -0.3949 3.7275 8 7 1.6654 0.2895 4.7981 9 14 2.9633 -1.9885 3.9028 10 1 4.4190 -1.6964 3.8720 11 1 2.6156 -2.6361 5.1931 12 1 2.6176 -2.8999 2.7825 13 6 2.0399 -0.7213 -1.2493 14 1 1.7895 -1.7783 -1.1595 15 6 3.5673 -0.5891 -1.2933 16 6 4.1051 -1.8429 -1.9523 17 6 4.4754 -1.5430 -3.4047 18 6 3.4774 -0.6643 -4.1765 19 16 1.7658 -1.1454 -3.9077 20 8 1.7280 -2.5295 -3.5876 21 8 0.9822 -0.6619 -4.9900 22 6 1.3406 -0.1859 -2.4036 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.5985 -1.7166 1.2997 27 1 3.1255 -0.8072 1.2014 28 1 1.9139 -0.0327 5.6786 29 1 3.9619 -0.5031 -0.2809 30 1 3.8487 0.2873 -1.8771 31 1 3.3431 -2.6219 -1.9257 32 1 4.9901 -2.1838 -1.4153 33 1 5.4453 -1.0458 -3.4136 34 1 4.5755 -2.4907 -3.9338 35 1 3.6063 0.3717 -3.8634 36 1 3.6964 -0.7369 -5.2418 37 1 0.2656 -0.2416 -2.2320 38 1 1.6268 0.8560 -2.5476 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260670056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:24 Heat of formation + Delta-G solvation = -112.766549 kcal Electronic energy + Delta-G solvation = -18826.141688 eV Core-core repulsion = 15987.352381 eV Total energy + Delta-G solvation = -2838.789306 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05731 -37.93477 -36.98517 -36.30114 -34.71624 -32.35360 -30.79858 -28.85856 -26.95491 -24.92988 -23.18947 -21.38496 -20.58768 -19.54612 -18.96691 -17.68418 -17.52376 -16.60131 -16.37529 -16.07666 -15.47665 -15.18663 -15.00058 -14.61588 -14.44724 -14.02095 -13.63192 -13.35119 -13.17117 -13.12689 -12.99571 -12.85548 -12.71017 -12.50802 -12.36314 -12.07033 -11.84475 -11.65637 -11.46566 -11.41289 -11.18560 -11.04744 -10.93046 -10.66633 -10.58204 -8.24369 -6.25408 -0.84291 1.35466 1.39139 1.50020 1.85449 2.38785 2.80410 3.06799 3.11702 3.61600 3.75692 3.88308 3.94339 3.99234 4.16703 4.28826 4.47523 4.59569 4.60563 4.69936 4.80397 4.86145 4.91578 5.04565 5.13271 5.15064 5.25622 5.28449 5.32658 5.38571 5.48927 5.57761 5.69809 5.77176 5.80291 6.36662 6.82971 7.38135 8.92340 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.006022 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.750880 B = 4648.769057 C = 5117.727588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 H 0.065 0.935 4 C -0.012 4.012 5 C -0.515 4.515 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.941 3.059 10 H -0.264 1.264 11 H -0.291 1.291 12 H -0.248 1.248 13 C -0.083 4.083 14 H 0.072 0.928 15 C -0.137 4.137 16 C -0.154 4.154 17 C -0.093 4.093 18 C -0.602 4.602 19 S 2.409 3.591 20 O -0.974 6.974 21 O -0.988 6.988 22 C -0.577 4.577 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.035 0.965 26 H 0.009 0.991 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.791 -1.864 -19.352 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 H 0.084 0.916 4 C -0.050 4.050 5 C -0.553 4.553 6 H 0.054 0.946 7 C -0.194 4.194 8 N -0.597 5.597 9 Si 0.765 3.235 10 H -0.189 1.189 11 H -0.217 1.217 12 H -0.172 1.172 13 C -0.102 4.102 14 H 0.090 0.910 15 C -0.174 4.174 16 C -0.192 4.192 17 C -0.131 4.131 18 C -0.734 4.734 19 S 2.598 3.402 20 O -0.972 6.972 21 O -0.985 6.985 22 C -0.706 4.706 23 H 0.093 0.907 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.028 0.972 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.182 0.818 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.244 -2.478 -19.739 20.851 hybrid contribution 0.346 0.046 1.370 1.414 sum 6.591 -2.432 -18.369 19.667 Atomic orbital electron populations 1.21935 0.96263 1.01148 1.01043 1.21017 0.95242 0.99137 0.93021 0.91609 1.19732 0.96643 0.95422 0.93158 1.21524 1.34305 1.08196 0.91315 0.94579 1.25958 0.97147 1.00657 0.95688 1.70073 1.49431 1.41483 0.98709 0.85790 0.79551 0.80326 0.77828 1.18866 1.21705 1.17195 1.19733 0.96125 1.00798 0.93544 0.90977 1.21912 0.92778 0.99469 1.03280 1.21898 1.03358 0.98325 0.95637 1.21146 0.98615 0.99472 0.93911 1.30166 1.18838 1.12991 1.11402 1.08037 0.79092 0.76133 0.76940 1.93506 1.87164 1.31779 1.84704 1.93527 1.69237 1.82827 1.52937 1.29010 1.11382 1.15629 1.14623 0.90669 0.93567 0.94598 0.97218 0.95205 0.92844 0.90614 0.88018 0.91010 0.89604 0.88324 0.90926 0.81800 0.82853 0.84090 0.82061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 8.25 71.98 0.59 -4.43 16 2 C -0.06 -2.21 1.86 -10.79 -0.02 -2.23 16 3 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.01 -0.54 3.36 29.85 0.10 -0.44 16 5 C -0.52 -28.64 8.96 25.60 0.23 -28.41 16 6 H 0.04 2.21 7.34 -2.91 -0.02 2.18 16 7 C 0.00 0.08 5.47 84.65 0.46 0.54 16 8 N -0.96 -59.71 13.96 21.45 0.30 -59.41 16 9 Si 0.94 43.94 27.47 68.60 1.88 45.82 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 12 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 13 C -0.08 -2.13 1.18 -13.04 -0.02 -2.15 16 14 H 0.07 2.07 6.52 -2.39 -0.02 2.05 16 15 C -0.14 -2.97 4.98 30.23 0.15 -2.82 16 16 C -0.15 -3.03 5.46 30.06 0.16 -2.87 16 17 C -0.09 -1.29 5.30 30.80 0.16 -1.13 16 18 C -0.60 -7.20 5.54 72.23 0.40 -6.80 16 19 S 2.41 49.49 5.16 -56.49 -0.29 49.20 16 20 O -0.97 -27.48 15.37 -127.37 -1.96 -29.44 16 21 O -0.99 -26.67 18.10 -127.37 -2.31 -28.97 16 22 C -0.58 -11.42 4.70 69.61 0.33 -11.10 16 23 H 0.07 1.99 6.12 -2.38 -0.01 1.98 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.03 1.44 6.98 -2.39 -0.02 1.42 16 26 H 0.01 0.43 7.20 -2.39 -0.02 0.42 16 27 H 0.03 1.25 5.49 -2.39 -0.01 1.23 16 28 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.08 1.97 5.76 -2.39 -0.01 1.96 16 30 H 0.10 1.48 6.33 -2.39 -0.02 1.46 16 31 H 0.07 1.70 5.53 -2.39 -0.01 1.69 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.16 0.97 7.06 -2.53 -0.02 0.96 16 36 H 0.15 1.27 8.14 -2.58 -0.02 1.25 16 37 H 0.14 2.85 5.57 -2.38 -0.01 2.83 16 38 H 0.16 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -76.45 291.07 1.17 -75.28 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.98 Total: 9.34 kcal Atomic # 6 Polarization: -64.37 SS G_CDS: 2.56 Total: -61.82 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.30 Total: -59.41 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -4.26 Total: -58.41 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Atomic # 16 Polarization: 49.49 SS G_CDS: -0.29 Total: 49.20 kcal Total: -76.45 1.17 -75.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260670056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.490 kcal (2) G-P(sol) polarization free energy of solvation -76.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds