Wall clock time and date at job start Mon Mar 30 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47124 * 2 1 4 4 H 1.08998 * 109.46544 * 304.99808 * 3 2 1 5 5 C 1.52994 * 109.47000 * 64.99786 * 3 2 1 6 6 C 1.53000 * 109.47401 * 185.00012 * 3 2 1 7 7 C 1.50702 * 109.38208 * 299.79203 * 6 3 2 8 8 H 1.08005 * 119.99301 * 265.04422 * 7 6 3 9 9 C 1.37871 * 120.00368 * 85.04704 * 7 6 3 10 10 N 1.31513 * 120.00181 * 351.38791 * 9 7 6 11 11 Si 1.86799 * 120.00041 * 171.38896 * 9 7 6 12 12 H 1.48501 * 109.47375 * 90.00211 * 11 9 7 13 13 H 1.48506 * 109.47460 * 210.00122 * 11 9 7 14 14 H 1.48499 * 109.47195 * 330.00016 * 11 9 7 15 15 C 1.52632 * 109.31087 * 59.62451 * 6 3 2 16 16 C 1.52585 * 110.62144 * 190.19836 * 15 6 3 17 17 C 1.53041 * 109.90183 * 289.85868 * 16 15 6 18 18 S 1.81678 * 108.99627 * 63.69839 * 17 16 15 19 19 O 1.42096 * 108.66031 * 60.03406 * 18 17 16 20 20 O 1.42096 * 108.66133 * 191.27688 * 18 17 16 21 21 C 1.53029 * 109.38680 * 179.97438 * 6 3 2 22 22 H 1.08994 * 109.46729 * 299.99962 * 1 2 3 23 23 H 1.09002 * 109.46982 * 60.00366 * 1 2 3 24 24 H 1.08997 * 109.46606 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47425 * 239.99863 * 2 1 3 26 26 H 1.09000 * 109.47486 * 119.99508 * 2 1 3 27 27 H 1.08998 * 109.47454 * 60.00579 * 5 3 2 28 28 H 1.09004 * 109.46980 * 180.02562 * 5 3 2 29 29 H 1.08999 * 109.47253 * 299.99797 * 5 3 2 30 30 H 0.97000 * 120.00342 * 184.39099 * 10 9 7 31 31 H 1.09005 * 109.33602 * 69.85284 * 15 6 3 32 32 H 1.09005 * 109.17280 * 310.44083 * 15 6 3 33 33 H 1.08995 * 109.38448 * 169.75439 * 16 15 6 34 34 H 1.09000 * 109.38747 * 49.96411 * 16 15 6 35 35 H 1.09000 * 109.55094 * 183.55145 * 17 16 15 36 36 H 1.08997 * 109.55048 * 303.84665 * 17 16 15 37 37 H 1.09003 * 109.54811 * 56.44523 * 21 6 3 38 38 H 1.09000 * 109.54878 * 296.15274 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5649 1.4444 -0.1257 7 6 4.1639 0.7032 1.0417 8 1 4.4915 1.2467 1.9156 9 6 4.2937 -0.6686 0.9941 10 7 3.7448 -1.3473 0.0104 11 14 5.2491 -1.5632 2.3268 12 1 4.3279 -1.9374 3.4298 13 1 5.8633 -2.7895 1.7573 14 1 6.3157 -0.6739 2.8529 15 6 3.9649 0.7531 -1.4263 16 6 5.4712 0.5129 -1.4659 17 6 6.2072 1.8451 -1.6261 18 16 5.8890 2.8760 -0.1644 19 8 6.3640 2.1916 0.9868 20 8 6.3489 4.1942 -0.4288 21 6 4.0727 2.8880 -0.1262 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 2.0699 1.5876 2.1491 28 1 1.9982 3.1544 1.3071 29 1 0.5489 2.1253 1.3968 30 1 3.7813 -2.3166 0.0103 31 1 3.6788 1.3798 -2.2711 32 1 3.4466 -0.2032 -1.4976 33 1 5.7120 -0.1369 -2.3073 34 1 5.7859 0.0349 -0.5382 35 1 7.2779 1.6617 -1.7170 36 1 5.8462 2.3563 -2.5185 37 1 3.7305 3.3953 0.7759 38 1 3.6925 3.4081 -1.0054 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:35 Heat of formation + Delta-G solvation = -70.456167 kcal Electronic energy + Delta-G solvation = -20037.428428 eV Core-core repulsion = 17200.473838 eV Total energy + Delta-G solvation = -2836.954591 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.39547 -36.04717 -35.06783 -33.89293 -31.99094 -31.03655 -27.81059 -26.62305 -25.24613 -23.93210 -21.29503 -19.87195 -18.65696 -17.86387 -16.08710 -15.91542 -15.04144 -14.91585 -14.57393 -13.91215 -13.62776 -13.53139 -13.02966 -12.54674 -12.44765 -12.27676 -11.81425 -11.68315 -11.31782 -11.16079 -11.09282 -10.89266 -10.66421 -10.59551 -10.50639 -10.21070 -10.13094 -9.94184 -9.86652 -9.67262 -9.30651 -8.99499 -8.70235 -8.57056 -8.10993 -5.95315 -4.10310 1.00293 3.32231 3.41150 3.57442 3.58930 4.44045 4.51779 4.90240 5.18059 5.43712 5.55360 5.66409 5.89875 6.03740 6.06788 6.12755 6.16806 6.31751 6.37379 6.43613 6.56158 6.60950 6.62895 6.73673 6.80480 6.92415 7.20534 7.23454 7.31791 7.42348 7.50632 7.57894 7.85167 8.05813 8.17063 8.31744 8.93766 9.55302 10.91682 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.012365 C = 0.009531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.674242 B = 2263.980423 C = 2936.928630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.095 4.095 3 C -0.059 4.059 4 H 0.028 0.972 5 C -0.139 4.139 6 C 0.086 3.914 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.076 3.924 10 N -0.878 5.878 11 Si 0.881 3.119 12 H -0.284 1.284 13 H -0.288 1.288 14 H -0.262 1.262 15 C -0.129 4.129 16 C -0.087 4.087 17 C -0.601 4.601 18 S 2.414 3.586 19 O -0.920 6.920 20 O -0.987 6.987 21 C -0.577 4.577 22 H 0.040 0.960 23 H 0.033 0.967 24 H 0.036 0.964 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.259 0.741 31 H 0.014 0.986 32 H 0.140 0.860 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 2.607 -3.272 4.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.132 4.132 3 C -0.079 4.079 4 H 0.046 0.954 5 C -0.196 4.196 6 C 0.085 3.915 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.126 4.126 10 N -0.517 5.517 11 Si 0.708 3.292 12 H -0.210 1.210 13 H -0.214 1.214 14 H -0.186 1.186 15 C -0.166 4.166 16 C -0.125 4.125 17 C -0.730 4.730 18 S 2.600 3.400 19 O -0.917 6.917 20 O -0.984 6.984 21 C -0.708 4.708 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.157 0.843 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.148 2.855 -2.793 4.156 hybrid contribution -0.093 -0.667 0.026 0.674 sum -1.241 2.189 -2.767 3.739 Atomic orbital electron populations 1.22045 1.00363 0.99464 0.99670 1.21722 0.89889 0.96129 1.05498 1.21082 0.96219 0.95916 0.94654 0.95354 1.21855 0.98435 0.99140 1.00178 1.18006 0.92897 0.84866 0.95703 1.21265 1.39120 0.92248 1.02163 0.90691 1.24693 0.94874 0.97442 0.95546 1.69976 1.43694 1.06830 1.31225 0.86711 0.81278 0.79078 0.82089 1.21019 1.21424 1.18640 1.22002 0.94966 1.05059 0.94573 1.21194 0.96106 0.91228 1.03942 1.30218 1.08724 1.14157 1.19936 1.07813 0.79644 0.74788 0.77768 1.93591 1.78742 1.74363 1.44978 1.93478 1.80622 1.37688 1.86650 1.30231 1.23184 1.08803 1.08603 0.94123 0.94744 0.94447 0.90079 0.89934 0.91567 0.94689 0.94966 0.93025 0.96719 0.84272 0.93054 0.87945 0.87073 0.87075 0.86235 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.67 37.16 0.36 -2.36 16 2 C -0.10 -1.89 3.64 -26.73 -0.10 -1.99 16 3 C -0.06 -1.14 1.74 -90.62 -0.16 -1.30 16 4 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.14 -2.56 8.35 37.15 0.31 -2.25 16 6 C 0.09 1.76 0.28 -155.83 -0.04 1.72 16 7 C -0.51 -11.80 3.46 -34.44 -0.12 -11.92 16 8 H 0.07 1.86 6.89 -52.48 -0.36 1.50 16 9 C 0.08 1.78 2.54 -17.82 -0.05 1.73 16 10 N -0.88 -20.08 6.87 55.43 0.38 -19.70 16 11 Si 0.88 20.11 29.55 -169.99 -5.02 15.09 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.26 -6.35 7.11 56.52 0.40 -5.94 16 15 C -0.13 -2.56 3.79 -27.13 -0.10 -2.67 16 16 C -0.09 -1.69 5.13 -26.92 -0.14 -1.83 16 17 C -0.60 -10.28 6.34 37.18 0.24 -10.04 16 18 S 2.41 46.57 5.20 -107.50 -0.56 46.01 16 19 O -0.92 -21.01 15.34 -57.82 -0.89 -21.90 16 20 O -0.99 -20.71 18.10 -57.82 -1.05 -21.76 16 21 C -0.58 -10.60 4.92 37.17 0.18 -10.42 16 22 H 0.04 0.67 6.56 -51.93 -0.34 0.33 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.71 5.27 -51.93 -0.27 1.43 16 26 H 0.08 1.85 5.92 -51.93 -0.31 1.55 16 27 H 0.07 1.32 7.21 -51.93 -0.37 0.94 16 28 H 0.03 0.60 6.35 -51.93 -0.33 0.27 16 29 H 0.03 0.54 6.56 -51.93 -0.34 0.20 16 30 H 0.26 5.88 8.32 -40.82 -0.34 5.54 16 31 H 0.01 0.26 8.09 -51.93 -0.42 -0.16 16 32 H 0.14 3.00 3.78 -51.93 -0.20 2.80 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.10 2.26 5.28 -51.93 -0.27 1.98 16 35 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 36 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.12 2.12 6.24 -51.93 -0.32 1.80 16 38 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 279.72 15.07 4.22 4.22 Total: -1.00 -26.59 279.72 -8.17 -34.77 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.64 Total: 4.59 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 0.38 Total: -41.32 kcal Atomic # 7 Polarization: -20.08 SS G_CDS: 0.38 Total: -19.70 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.93 Total: -43.66 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 46.57 SS G_CDS: -0.56 Total: 46.01 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.59 -8.17 -34.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.691 kcal (2) G-P(sol) polarization free energy of solvation -26.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds