Wall clock time and date at job start Mon Mar 30 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47124 * 2 1 4 4 H 1.08998 * 109.46544 * 304.99808 * 3 2 1 5 5 C 1.52994 * 109.47000 * 64.99786 * 3 2 1 6 6 C 1.53000 * 109.47401 * 185.00012 * 3 2 1 7 7 C 1.50702 * 109.38208 * 299.79203 * 6 3 2 8 8 H 1.08005 * 119.99301 * 265.04422 * 7 6 3 9 9 C 1.37871 * 120.00368 * 85.04704 * 7 6 3 10 10 N 1.31513 * 120.00181 * 351.38791 * 9 7 6 11 11 Si 1.86799 * 120.00041 * 171.38896 * 9 7 6 12 12 H 1.48501 * 109.47375 * 90.00211 * 11 9 7 13 13 H 1.48506 * 109.47460 * 210.00122 * 11 9 7 14 14 H 1.48499 * 109.47195 * 330.00016 * 11 9 7 15 15 C 1.52632 * 109.31087 * 59.62451 * 6 3 2 16 16 C 1.52585 * 110.62144 * 190.19836 * 15 6 3 17 17 C 1.53041 * 109.90183 * 289.85868 * 16 15 6 18 18 S 1.81678 * 108.99627 * 63.69839 * 17 16 15 19 19 O 1.42096 * 108.66031 * 60.03406 * 18 17 16 20 20 O 1.42096 * 108.66133 * 191.27688 * 18 17 16 21 21 C 1.53029 * 109.38680 * 179.97438 * 6 3 2 22 22 H 1.08994 * 109.46729 * 299.99962 * 1 2 3 23 23 H 1.09002 * 109.46982 * 60.00366 * 1 2 3 24 24 H 1.08997 * 109.46606 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47425 * 239.99863 * 2 1 3 26 26 H 1.09000 * 109.47486 * 119.99508 * 2 1 3 27 27 H 1.08998 * 109.47454 * 60.00579 * 5 3 2 28 28 H 1.09004 * 109.46980 * 180.02562 * 5 3 2 29 29 H 1.08999 * 109.47253 * 299.99797 * 5 3 2 30 30 H 0.97000 * 120.00342 * 184.39099 * 10 9 7 31 31 H 1.09005 * 109.33602 * 69.85284 * 15 6 3 32 32 H 1.09005 * 109.17280 * 310.44083 * 15 6 3 33 33 H 1.08995 * 109.38448 * 169.75439 * 16 15 6 34 34 H 1.09000 * 109.38747 * 49.96411 * 16 15 6 35 35 H 1.09000 * 109.55094 * 183.55145 * 17 16 15 36 36 H 1.08997 * 109.55048 * 303.84665 * 17 16 15 37 37 H 1.09003 * 109.54811 * 56.44523 * 21 6 3 38 38 H 1.09000 * 109.54878 * 296.15274 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5649 1.4444 -0.1257 7 6 4.1639 0.7032 1.0417 8 1 4.4915 1.2467 1.9156 9 6 4.2937 -0.6686 0.9941 10 7 3.7448 -1.3473 0.0104 11 14 5.2491 -1.5632 2.3268 12 1 4.3279 -1.9374 3.4298 13 1 5.8633 -2.7895 1.7573 14 1 6.3157 -0.6739 2.8529 15 6 3.9649 0.7531 -1.4263 16 6 5.4712 0.5129 -1.4659 17 6 6.2072 1.8451 -1.6261 18 16 5.8890 2.8760 -0.1644 19 8 6.3640 2.1916 0.9868 20 8 6.3489 4.1942 -0.4288 21 6 4.0727 2.8880 -0.1262 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 2.0699 1.5876 2.1491 28 1 1.9982 3.1544 1.3071 29 1 0.5489 2.1253 1.3968 30 1 3.7813 -2.3166 0.0103 31 1 3.6788 1.3798 -2.2711 32 1 3.4466 -0.2032 -1.4976 33 1 5.7120 -0.1369 -2.3073 34 1 5.7859 0.0349 -0.5382 35 1 7.2779 1.6617 -1.7170 36 1 5.8462 2.3563 -2.5185 37 1 3.7305 3.3953 0.7759 38 1 3.6925 3.4081 -1.0054 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261131276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:34 Heat of formation + Delta-G solvation = -86.494303 kcal Electronic energy + Delta-G solvation = -20038.123894 eV Core-core repulsion = 17200.473838 eV Total energy + Delta-G solvation = -2837.650056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97163 -37.64254 -36.69543 -35.38762 -33.73834 -32.52096 -29.27279 -28.10335 -26.99313 -25.40941 -22.80034 -21.41461 -20.30207 -19.39819 -17.72154 -17.44640 -16.67004 -16.58435 -16.22364 -15.48566 -15.18634 -15.03177 -14.57002 -14.03548 -13.94383 -13.77334 -13.34651 -13.22237 -12.94125 -12.80856 -12.66201 -12.55069 -12.44500 -12.21558 -12.11195 -11.76582 -11.67947 -11.55679 -11.44873 -11.20720 -10.90754 -10.57143 -10.24183 -10.18880 -9.84722 -7.75139 -5.89445 -0.49627 1.43285 1.50322 1.66943 2.12220 2.59155 3.02905 3.31742 3.47652 4.10633 4.13705 4.19414 4.41642 4.58497 4.61857 4.70708 4.76770 4.89273 4.93048 5.00390 5.08640 5.14088 5.16762 5.26283 5.34559 5.45737 5.66548 5.69630 5.77210 5.85328 5.90045 6.02348 6.16076 6.42098 6.49860 6.67563 7.11417 7.74271 9.08288 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.012365 C = 0.009531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.674242 B = 2263.980423 C = 2936.928630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C -0.060 4.060 4 H 0.046 0.954 5 C -0.137 4.137 6 C 0.080 3.920 7 C -0.507 4.507 8 H 0.049 0.951 9 C 0.060 3.940 10 N -0.871 5.871 11 Si 0.898 3.102 12 H -0.287 1.287 13 H -0.285 1.285 14 H -0.288 1.288 15 C -0.130 4.130 16 C -0.089 4.089 17 C -0.585 4.585 18 S 2.411 3.589 19 O -0.967 6.967 20 O -1.006 7.006 21 C -0.573 4.573 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.256 0.744 31 H 0.042 0.958 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.130 0.870 36 H 0.147 0.853 37 H 0.123 0.877 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 3.536 -5.289 7.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.127 4.127 3 C -0.080 4.080 4 H 0.065 0.935 5 C -0.194 4.194 6 C 0.079 3.921 7 C -0.546 4.546 8 H 0.067 0.933 9 C -0.140 4.140 10 N -0.511 5.511 11 Si 0.728 3.272 12 H -0.213 1.213 13 H -0.211 1.211 14 H -0.214 1.214 15 C -0.167 4.167 16 C -0.128 4.128 17 C -0.717 4.717 18 S 2.601 3.399 19 O -0.964 6.964 20 O -1.004 7.004 21 C -0.705 4.705 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.148 0.852 36 H 0.165 0.835 37 H 0.141 0.859 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.252 3.786 -4.788 6.507 hybrid contribution 0.264 -0.969 0.654 1.198 sum -1.989 2.817 -4.134 5.384 Atomic orbital electron populations 1.21953 0.98181 1.00109 1.00658 1.21546 0.91802 0.96076 1.03295 1.21075 0.95404 0.95830 0.95656 0.93534 1.21814 0.99432 0.99326 0.98801 1.18032 0.93587 0.85691 0.94788 1.21236 1.38749 0.92192 1.02426 0.93314 1.24809 0.95465 0.97888 0.95852 1.70043 1.43729 1.06450 1.30835 0.86494 0.80288 0.78498 0.81948 1.21322 1.21121 1.21365 1.21941 0.94976 1.04736 0.95050 1.21117 0.96251 0.92470 1.02934 1.30045 1.10017 1.12267 1.19380 1.07655 0.79996 0.74337 0.77910 1.93542 1.79893 1.75095 1.47855 1.93448 1.81226 1.38754 1.86937 1.30152 1.21864 1.07934 1.10595 0.93608 0.93159 0.94097 0.91286 0.93121 0.94001 0.93503 0.93284 0.93361 0.93960 0.85903 0.91715 0.91076 0.85193 0.83468 0.85902 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 9.67 71.98 0.70 -4.14 16 2 C -0.09 -3.44 3.64 30.60 0.11 -3.33 16 3 C -0.06 -2.18 1.74 -10.79 -0.02 -2.20 16 4 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 5 C -0.14 -4.78 8.35 71.98 0.60 -4.18 16 6 C 0.08 3.12 0.28 -53.04 -0.02 3.11 16 7 C -0.51 -23.62 3.46 25.60 0.09 -23.53 16 8 H 0.05 2.50 6.89 -2.91 -0.02 2.48 16 9 C 0.06 2.88 2.54 84.65 0.22 3.09 16 10 N -0.87 -39.78 6.87 21.44 0.15 -39.63 16 11 Si 0.90 42.00 29.55 68.60 2.03 44.03 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 15 C -0.13 -4.82 3.79 30.33 0.11 -4.70 16 16 C -0.09 -3.28 5.13 30.47 0.16 -3.13 16 17 C -0.59 -18.14 6.34 72.00 0.46 -17.69 16 18 S 2.41 89.60 5.20 -56.49 -0.29 89.31 16 19 O -0.97 -44.85 15.34 -127.38 -1.95 -46.81 16 20 O -1.01 -40.53 18.10 -127.38 -2.31 -42.83 16 21 C -0.57 -19.59 4.92 71.99 0.35 -19.24 16 22 H 0.04 1.40 6.56 -2.39 -0.02 1.38 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 2.81 5.27 -2.39 -0.01 2.79 16 26 H 0.05 2.26 5.92 -2.39 -0.01 2.25 16 27 H 0.04 1.65 7.21 -2.39 -0.02 1.63 16 28 H 0.05 1.50 6.35 -2.38 -0.02 1.48 16 29 H 0.05 1.52 6.56 -2.39 -0.02 1.51 16 30 H 0.26 11.64 8.32 -92.71 -0.77 10.87 16 31 H 0.04 1.33 8.09 -2.38 -0.02 1.31 16 32 H 0.12 5.06 3.78 -2.38 -0.01 5.05 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 3.10 5.28 -2.39 -0.01 3.09 16 35 H 0.13 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.15 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.12 4.13 6.24 -2.39 -0.01 4.11 16 38 H 0.14 3.73 8.14 -2.39 -0.02 3.72 16 Total: -1.00 -57.11 279.72 1.43 -55.68 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 1.05 Total: 16.19 kcal Atomic # 6 Polarization: -78.70 SS G_CDS: 2.76 Total: -75.94 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.15 Total: -39.63 kcal Atomic # 8 Polarization: -85.38 SS G_CDS: -4.26 Total: -89.64 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 89.60 SS G_CDS: -0.29 Total: 89.31 kcal Total: -57.11 1.43 -55.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.810 kcal (2) G-P(sol) polarization free energy of solvation -57.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds