Wall clock time and date at job start Mon Mar 30 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46894 * 2 1 4 4 H 1.08997 * 109.47326 * 54.99704 * 3 2 1 5 5 C 1.53007 * 109.46764 * 295.00065 * 3 2 1 6 6 C 1.52999 * 109.47156 * 175.00490 * 3 2 1 7 7 C 1.50696 * 109.38474 * 60.20591 * 6 3 2 8 8 H 1.07996 * 120.00505 * 265.30237 * 7 6 3 9 9 C 1.37882 * 119.99596 * 85.31021 * 7 6 3 10 10 N 1.31507 * 120.00025 * 351.70103 * 9 7 6 11 11 Si 1.86799 * 119.99919 * 171.70632 * 9 7 6 12 12 H 1.48507 * 109.47149 * 59.99387 * 11 9 7 13 13 H 1.48494 * 109.47374 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.47111 * 299.99694 * 11 9 7 15 15 C 1.52585 * 109.38373 * 179.97438 * 6 3 2 16 16 C 1.52594 * 110.64195 * 190.14040 * 15 6 3 17 17 C 1.53039 * 109.98339 * 290.01493 * 16 15 6 18 18 S 1.81664 * 108.99883 * 63.64851 * 17 16 15 19 19 O 1.42095 * 108.66513 * 60.02856 * 18 17 16 20 20 O 1.42102 * 108.66144 * 191.36867 * 18 17 16 21 21 C 1.53039 * 109.37963 * 300.52306 * 6 3 2 22 22 H 1.08998 * 109.47574 * 60.00327 * 1 2 3 23 23 H 1.09003 * 109.46746 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46970 * 299.99371 * 1 2 3 25 25 H 1.09004 * 109.46970 * 240.00629 * 2 1 3 26 26 H 1.08998 * 109.47574 * 119.99673 * 2 1 3 27 27 H 1.08993 * 109.47210 * 299.99520 * 5 3 2 28 28 H 1.08996 * 109.46962 * 60.00264 * 5 3 2 29 29 H 1.09004 * 109.46439 * 180.02562 * 5 3 2 30 30 H 0.97005 * 119.99842 * 183.31401 * 10 9 7 31 31 H 1.08998 * 109.24425 * 310.43817 * 15 6 3 32 32 H 1.09000 * 109.24179 * 69.88629 * 15 6 3 33 33 H 1.08996 * 109.38122 * 50.17088 * 16 15 6 34 34 H 1.09000 * 109.38418 * 169.96180 * 16 15 6 35 35 H 1.09006 * 109.54460 * 183.50182 * 17 16 15 36 36 H 1.08998 * 109.55111 * 303.78760 * 17 16 15 37 37 H 1.08997 * 109.55409 * 296.04772 * 21 6 3 38 38 H 1.08998 * 109.55136 * 56.34392 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6351 2.1265 -1.3074 6 6 3.5648 1.4444 0.1256 7 6 4.1637 0.7032 -1.0418 8 1 4.4097 -0.3442 -0.9478 9 6 4.3979 1.3624 -2.2300 10 7 3.9522 2.5877 -2.4011 11 14 5.3483 0.5148 -3.5967 12 1 4.6313 -0.7196 -4.0063 13 1 5.4630 1.4295 -4.7608 14 1 6.7057 0.1602 -3.1095 15 6 4.0712 2.8838 0.1248 16 6 5.5913 2.9192 -0.0034 17 6 6.2369 2.3999 1.2834 18 16 5.7803 0.6565 1.5123 19 8 6.2503 -0.0869 0.3962 20 8 6.1546 0.2569 2.8235 21 6 3.9680 0.7483 1.4275 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 2.0698 1.5876 -2.1492 28 1 0.5488 2.1252 -1.3969 29 1 1.9988 3.1541 -1.3076 30 1 4.0749 3.0338 -3.2537 31 1 3.6275 3.4203 -0.7139 32 1 3.7785 3.3681 1.0563 33 1 5.8984 2.2925 -0.8407 34 1 5.9157 3.9445 -0.1808 35 1 7.3209 2.4862 1.2081 36 1 5.8811 2.9846 2.1316 37 1 3.5918 1.3177 2.2773 38 1 3.5502 -0.2583 1.4474 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131279.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:41 Heat of formation + Delta-G solvation = -70.209145 kcal Electronic energy + Delta-G solvation = -20011.823014 eV Core-core repulsion = 17174.879135 eV Total energy + Delta-G solvation = -2836.943879 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.39582 -36.05113 -35.06579 -34.08114 -32.09660 -30.68150 -28.37099 -26.17353 -25.32725 -23.46575 -22.06778 -19.60813 -18.69558 -17.88194 -16.09996 -15.90093 -15.04458 -14.95506 -14.59012 -13.97660 -13.75197 -13.44818 -13.26320 -12.55623 -12.39311 -12.29729 -11.64364 -11.56185 -11.32257 -11.24340 -11.13117 -10.89802 -10.68254 -10.64959 -10.50917 -10.24168 -10.04795 -9.96563 -9.77223 -9.61873 -9.43990 -9.15697 -8.69506 -8.54775 -8.12146 -5.95084 -4.10493 1.00506 3.36496 3.39719 3.52868 3.59157 4.43508 4.51312 4.90616 5.18250 5.43918 5.55138 5.63700 5.78817 5.89007 5.92921 6.03748 6.07555 6.33288 6.41638 6.46962 6.53347 6.58922 6.68273 6.73584 6.78169 6.95644 7.20681 7.22126 7.30287 7.42492 7.50428 7.52752 7.83942 8.07354 8.16803 8.31747 8.93533 9.55096 10.91664 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.013141 C = 0.009641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.851031 B = 2130.158075 C = 2903.447316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.058 4.058 4 H 0.028 0.972 5 C -0.117 4.117 6 C 0.087 3.913 7 C -0.511 4.511 8 H 0.075 0.925 9 C 0.075 3.925 10 N -0.878 5.878 11 Si 0.886 3.114 12 H -0.279 1.279 13 H -0.292 1.292 14 H -0.268 1.268 15 C -0.128 4.128 16 C -0.087 4.087 17 C -0.601 4.601 18 S 2.415 3.585 19 O -0.920 6.920 20 O -0.987 6.987 21 C -0.578 4.578 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.002 0.998 29 H 0.061 0.939 30 H 0.259 0.741 31 H 0.141 0.859 32 H 0.013 0.987 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.032 1.345 3.995 4.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.078 4.078 4 H 0.046 0.954 5 C -0.174 4.174 6 C 0.086 3.914 7 C -0.549 4.549 8 H 0.093 0.907 9 C -0.126 4.126 10 N -0.516 5.516 11 Si 0.713 3.287 12 H -0.204 1.204 13 H -0.218 1.218 14 H -0.193 1.193 15 C -0.165 4.165 16 C -0.125 4.125 17 C -0.730 4.730 18 S 2.600 3.400 19 O -0.917 6.917 20 O -0.984 6.984 21 C -0.709 4.709 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.021 0.979 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.158 0.842 32 H 0.032 0.968 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.387 0.757 4.017 4.316 hybrid contribution 0.016 0.273 -0.575 0.636 sum -1.371 1.030 3.442 3.845 Atomic orbital electron populations 1.21857 0.98057 0.99888 1.01004 1.21568 0.93243 0.98635 1.01651 1.21077 0.96085 0.93798 0.96824 0.95393 1.21929 0.94935 1.01948 0.98599 1.17997 0.93181 0.92307 0.87952 1.21240 1.39855 0.97461 0.96369 0.90739 1.24700 0.94966 0.94713 0.98234 1.70004 1.45261 1.12314 1.24056 0.86724 0.81914 0.79288 0.80731 1.20423 1.21766 1.19334 1.21990 0.94063 0.98687 1.01760 1.21201 0.96788 1.01059 0.93435 1.30216 1.09301 1.25126 1.08396 1.07789 0.79826 0.78292 0.74052 1.93586 1.78936 1.67375 1.51821 1.93479 1.82884 1.81498 1.40571 1.30244 1.23075 1.09594 1.08004 0.92800 0.94248 0.94019 0.90927 0.93668 0.90060 0.97929 0.92028 0.93003 0.84207 0.96809 0.87913 0.93073 0.87074 0.87077 0.87909 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.67 37.16 0.36 -2.02 16 2 C -0.11 -2.08 4.84 -26.73 -0.13 -2.21 16 3 C -0.06 -1.13 1.75 -90.62 -0.16 -1.29 16 4 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 5 C -0.12 -2.39 7.20 37.16 0.27 -2.12 16 6 C 0.09 1.78 0.29 -155.85 -0.04 1.73 16 7 C -0.51 -11.87 3.55 -34.44 -0.12 -11.99 16 8 H 0.07 1.85 6.89 -52.49 -0.36 1.49 16 9 C 0.08 1.77 2.48 -17.82 -0.04 1.73 16 10 N -0.88 -20.23 6.89 55.43 0.38 -19.84 16 11 Si 0.89 20.27 29.55 -169.99 -5.02 15.24 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 15 C -0.13 -2.57 3.79 -27.15 -0.10 -2.67 16 16 C -0.09 -1.70 5.11 -26.92 -0.14 -1.84 16 17 C -0.60 -10.34 6.35 37.18 0.24 -10.10 16 18 S 2.41 46.69 5.21 -107.50 -0.56 46.14 16 19 O -0.92 -21.03 15.34 -57.81 -0.89 -21.92 16 20 O -0.99 -20.73 18.10 -57.81 -1.05 -21.78 16 21 C -0.58 -10.64 4.92 37.18 0.18 -10.46 16 22 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.45 7.40 -51.93 -0.38 1.07 16 26 H 0.04 0.79 6.08 -51.93 -0.32 0.47 16 27 H 0.08 1.84 5.48 -51.93 -0.28 1.56 16 28 H 0.00 0.03 6.56 -51.93 -0.34 -0.31 16 29 H 0.06 1.30 5.72 -51.93 -0.30 1.00 16 30 H 0.26 5.95 8.31 -40.82 -0.34 5.61 16 31 H 0.14 3.05 3.81 -51.93 -0.20 2.85 16 32 H 0.01 0.24 8.09 -51.93 -0.42 -0.18 16 33 H 0.10 2.28 5.27 -51.93 -0.27 2.01 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.11 1.72 8.14 -51.92 -0.42 1.30 16 36 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.12 2.13 6.12 -51.93 -0.32 1.81 16 LS Contribution 279.63 15.07 4.21 4.21 Total: -1.00 -26.68 279.63 -8.24 -34.92 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.63 Total: 4.26 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 0.31 Total: -41.24 kcal Atomic # 7 Polarization: -20.23 SS G_CDS: 0.38 Total: -19.84 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -1.93 Total: -43.70 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 46.69 SS G_CDS: -0.56 Total: 46.14 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.68 -8.24 -34.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131279.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.286 kcal (2) G-P(sol) polarization free energy of solvation -26.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds