Wall clock time and date at job start Mon Mar 30 2020 06:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46979 * 2 1 4 4 C 1.37163 * 119.99742 * 98.37766 * 3 2 1 5 5 H 1.07999 * 120.00286 * 155.61350 * 4 3 2 6 6 C 1.38889 * 120.00264 * 335.61227 * 4 3 2 7 7 N 1.31476 * 119.99627 * 356.05969 * 6 4 3 8 8 Si 1.86801 * 120.00307 * 176.06325 * 6 4 3 9 9 H 1.48497 * 109.46913 * 89.99670 * 8 6 4 10 10 H 1.48491 * 109.47299 * 209.99983 * 8 6 4 11 11 H 1.48497 * 109.46710 * 330.00207 * 8 6 4 12 12 C 1.34766 * 119.99840 * 278.37311 * 3 2 1 13 13 O 1.21594 * 120.00045 * 183.41043 * 12 3 2 14 14 N 1.34777 * 120.00465 * 3.69034 * 12 3 2 15 15 C 1.46541 * 124.97520 * 350.27238 * 14 12 3 16 16 C 1.53740 * 105.19781 * 180.02562 * 15 14 12 17 17 C 1.51219 * 104.57636 * 359.97438 * 16 15 14 18 18 C 1.38183 * 130.96844 * 180.02562 * 17 16 15 19 19 C 1.38237 * 120.14408 * 179.20256 * 18 17 16 20 20 C 1.38296 * 119.82907 * 0.71151 * 19 18 17 21 21 C 1.37841 * 120.22405 * 359.54156 * 20 19 18 22 22 C 1.38552 * 108.55824 * 359.73780 * 17 16 15 23 23 H 1.08994 * 109.47251 * 289.43431 * 1 2 3 24 24 H 1.09000 * 109.47296 * 49.43052 * 1 2 3 25 25 H 1.08998 * 109.47151 * 169.43310 * 1 2 3 26 26 H 1.08996 * 109.47213 * 239.99723 * 2 1 3 27 27 H 1.09003 * 109.46943 * 119.99795 * 2 1 3 28 28 H 0.97001 * 119.99809 * 180.02562 * 7 6 4 29 29 H 1.09000 * 110.29452 * 298.93428 * 15 14 12 30 30 H 1.09005 * 110.29518 * 60.97088 * 15 14 12 31 31 H 1.09003 * 110.41521 * 118.77843 * 16 15 14 32 32 H 1.09001 * 110.40919 * 241.22533 * 16 15 14 33 33 H 1.07996 * 119.93021 * 359.97438 * 18 17 16 34 34 H 1.08005 * 120.08339 * 180.25184 * 19 18 17 35 35 H 1.07999 * 119.89271 * 179.56606 * 20 19 18 36 36 H 1.08001 * 119.85880 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4101 1.9701 1.1752 5 1 3.1119 2.7909 1.1603 6 6 1.9042 1.5110 2.3845 7 7 0.9919 0.5644 2.3983 8 14 2.5199 2.2384 3.9911 9 1 1.6753 3.4016 4.3636 10 1 2.4463 1.2106 5.0602 11 1 3.9277 2.6814 3.8264 12 6 2.0827 2.0732 -1.1547 13 8 2.5457 3.1975 -1.1648 14 7 1.6286 1.5212 -2.2973 15 6 1.2343 0.1186 -2.4539 16 6 0.7958 -0.0154 -3.9213 17 6 0.9813 1.3685 -4.5019 18 6 0.7512 1.8555 -5.7744 19 6 0.9870 3.1871 -6.0613 20 6 1.4682 4.0285 -5.0749 21 6 1.7041 3.5459 -3.8055 22 6 1.4588 2.2044 -3.5053 23 1 -0.3633 0.3419 0.9691 24 1 -0.3634 0.6684 -0.7806 25 1 -0.3633 -1.0102 -0.1885 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.6383 0.2439 3.2429 29 1 2.0812 -0.5371 -2.2513 30 1 0.4056 -0.1180 -1.7865 31 1 1.4274 -0.7347 -4.4428 32 1 -0.2507 -0.3146 -3.9795 33 1 0.3745 1.1973 -6.5433 34 1 0.8029 3.5676 -7.0552 35 1 1.6595 5.0674 -5.2997 36 1 2.0796 4.2083 -3.0395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277857434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:25 Heat of formation + Delta-G solvation = 65.159148 kcal Electronic energy + Delta-G solvation = -20031.422140 eV Core-core repulsion = 17097.197071 eV Total energy + Delta-G solvation = -2934.225069 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77324 -38.36928 -35.88242 -35.38603 -32.00669 -31.61571 -30.12384 -29.13403 -28.24614 -25.00860 -23.02490 -22.70546 -21.84620 -20.94892 -19.44896 -17.25006 -16.52212 -15.84009 -15.55171 -15.29642 -15.04179 -14.21548 -13.89301 -13.81902 -13.43066 -13.10768 -12.98257 -12.45760 -12.28367 -11.99270 -11.67256 -11.51948 -11.38343 -11.06777 -10.92738 -10.58521 -10.53256 -10.34566 -10.19502 -9.80539 -9.44916 -8.96013 -8.80128 -8.42627 -7.72269 -7.07852 -6.24084 -3.91184 1.73272 1.84065 3.18126 3.23248 3.26826 3.45638 3.97457 4.19395 4.35530 4.75952 4.93281 5.07226 5.17600 5.33485 5.40787 5.43844 5.61618 5.74893 5.91409 6.02319 6.04645 6.11425 6.23504 6.36831 6.46120 6.55440 6.63884 6.71411 6.84806 6.93457 7.00869 7.26124 7.40750 7.50329 7.77524 7.83217 8.32796 8.58618 9.14841 9.41404 9.97127 10.71962 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.034044 B = 0.006314 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.270849 B = 4433.344059 C = 5085.096070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.455 5.455 4 C -0.285 4.285 5 H 0.098 0.902 6 C 0.024 3.976 7 N -0.886 5.886 8 Si 0.933 3.067 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.663 3.337 13 O -0.601 6.601 14 N -0.567 5.567 15 C 0.066 3.934 16 C -0.086 4.086 17 C -0.163 4.163 18 C -0.077 4.077 19 C -0.169 4.169 20 C -0.092 4.092 21 C -0.145 4.145 22 C 0.197 3.803 23 H 0.109 0.891 24 H 0.032 0.968 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.265 0.735 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 -3.542 -10.831 11.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.025 4.025 3 N -0.177 5.177 4 C -0.413 4.413 5 H 0.115 0.885 6 C -0.176 4.176 7 N -0.527 5.527 8 Si 0.760 3.240 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.196 1.196 12 C 0.368 3.632 13 O -0.482 6.482 14 N -0.291 5.291 15 C -0.055 4.055 16 C -0.123 4.123 17 C -0.167 4.167 18 C -0.096 4.096 19 C -0.189 4.189 20 C -0.111 4.111 21 C -0.167 4.167 22 C 0.097 3.903 23 H 0.127 0.873 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.189 -3.102 -10.349 11.023 hybrid contribution 0.159 0.164 0.831 0.862 sum -2.030 -2.938 -9.518 10.166 Atomic orbital electron populations 1.22600 0.97081 0.98437 1.04320 1.22151 0.94484 0.83935 1.01899 1.42894 1.59430 1.11200 1.04147 1.19593 1.23371 1.16838 0.81516 0.88457 1.25317 0.95682 0.97143 0.99486 1.69922 1.27865 1.28591 1.26298 0.85815 0.79166 0.78399 0.80620 1.20459 1.20942 1.19607 1.15882 0.83161 0.84306 0.79835 1.90713 1.53739 1.19059 1.84693 1.45126 1.65628 1.09951 1.08406 1.23417 1.02227 0.82796 0.97082 1.21164 1.02107 0.94377 0.94674 1.19984 1.07110 0.95699 0.93943 1.20213 0.99700 0.95318 0.94352 1.20808 1.05144 0.93710 0.99222 1.20839 0.98414 0.99322 0.92515 1.20990 1.04047 0.93892 0.97736 1.18256 0.94598 0.92639 0.84826 0.87272 0.94923 0.94504 0.92916 0.88092 0.92480 0.90368 0.86413 0.90146 0.89963 0.86580 0.86506 0.86242 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 7.95 37.16 0.30 -3.12 16 2 C 0.10 2.15 4.84 -4.04 -0.02 2.13 16 3 N -0.45 -11.74 2.65 -120.18 -0.32 -12.06 16 4 C -0.29 -7.88 9.30 -14.93 -0.14 -8.02 16 5 H 0.10 2.82 7.39 -52.49 -0.39 2.44 16 6 C 0.02 0.63 5.22 -17.46 -0.09 0.54 16 7 N -0.89 -22.38 7.92 55.49 0.44 -21.94 16 8 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.66 17.11 8.06 -86.93 -0.70 16.41 16 13 O -0.60 -17.20 14.29 5.28 0.08 -17.12 16 14 N -0.57 -12.17 3.01 -118.30 -0.36 -12.53 16 15 C 0.07 1.12 4.86 -3.63 -0.02 1.10 16 16 C -0.09 -1.19 6.94 -27.24 -0.19 -1.38 16 17 C -0.16 -2.66 6.23 -104.27 -0.65 -3.31 16 18 C -0.08 -1.08 10.04 -39.60 -0.40 -1.48 16 19 C -0.17 -2.33 10.06 -39.56 -0.40 -2.73 16 20 C -0.09 -1.43 10.02 -39.71 -0.40 -1.83 16 21 C -0.15 -2.83 9.46 -39.20 -0.37 -3.20 16 22 C 0.20 3.93 6.61 -83.58 -0.55 3.37 16 23 H 0.11 2.58 5.66 -51.93 -0.29 2.28 16 24 H 0.03 0.67 6.30 -51.93 -0.33 0.35 16 25 H 0.04 0.62 8.10 -51.93 -0.42 0.20 16 26 H 0.05 1.01 3.74 -52.00 -0.19 0.81 16 27 H 0.10 2.40 6.21 -51.93 -0.32 2.08 16 28 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 29 H 0.08 1.25 6.33 -51.93 -0.33 0.92 16 30 H 0.12 1.99 3.08 -51.93 -0.16 1.83 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 35 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.14 3.03 6.34 -52.49 -0.33 2.70 16 LS Contribution 280.23 15.07 4.22 4.22 Total: -1.00 -30.33 280.23 -8.60 -38.94 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.02 Total: 6.40 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.63 Total: -1.52 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.23 Total: -46.52 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.08 Total: -17.12 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.33 -8.60 -38.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277857434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.095 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds