Wall clock time and date at job start Mon Mar 30 2020 06:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46979 * 2 1 4 4 C 1.37163 * 119.99742 * 98.37766 * 3 2 1 5 5 H 1.07999 * 120.00286 * 155.61350 * 4 3 2 6 6 C 1.38889 * 120.00264 * 335.61227 * 4 3 2 7 7 N 1.31476 * 119.99627 * 356.05969 * 6 4 3 8 8 Si 1.86801 * 120.00307 * 176.06325 * 6 4 3 9 9 H 1.48497 * 109.46913 * 89.99670 * 8 6 4 10 10 H 1.48491 * 109.47299 * 209.99983 * 8 6 4 11 11 H 1.48497 * 109.46710 * 330.00207 * 8 6 4 12 12 C 1.34766 * 119.99840 * 278.37311 * 3 2 1 13 13 O 1.21594 * 120.00045 * 183.41043 * 12 3 2 14 14 N 1.34777 * 120.00465 * 3.69034 * 12 3 2 15 15 C 1.46541 * 124.97520 * 350.27238 * 14 12 3 16 16 C 1.53740 * 105.19781 * 180.02562 * 15 14 12 17 17 C 1.51219 * 104.57636 * 359.97438 * 16 15 14 18 18 C 1.38183 * 130.96844 * 180.02562 * 17 16 15 19 19 C 1.38237 * 120.14408 * 179.20256 * 18 17 16 20 20 C 1.38296 * 119.82907 * 0.71151 * 19 18 17 21 21 C 1.37841 * 120.22405 * 359.54156 * 20 19 18 22 22 C 1.38552 * 108.55824 * 359.73780 * 17 16 15 23 23 H 1.08994 * 109.47251 * 289.43431 * 1 2 3 24 24 H 1.09000 * 109.47296 * 49.43052 * 1 2 3 25 25 H 1.08998 * 109.47151 * 169.43310 * 1 2 3 26 26 H 1.08996 * 109.47213 * 239.99723 * 2 1 3 27 27 H 1.09003 * 109.46943 * 119.99795 * 2 1 3 28 28 H 0.97001 * 119.99809 * 180.02562 * 7 6 4 29 29 H 1.09000 * 110.29452 * 298.93428 * 15 14 12 30 30 H 1.09005 * 110.29518 * 60.97088 * 15 14 12 31 31 H 1.09003 * 110.41521 * 118.77843 * 16 15 14 32 32 H 1.09001 * 110.40919 * 241.22533 * 16 15 14 33 33 H 1.07996 * 119.93021 * 359.97438 * 18 17 16 34 34 H 1.08005 * 120.08339 * 180.25184 * 19 18 17 35 35 H 1.07999 * 119.89271 * 179.56606 * 20 19 18 36 36 H 1.08001 * 119.85880 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4101 1.9701 1.1752 5 1 3.1119 2.7909 1.1603 6 6 1.9042 1.5110 2.3845 7 7 0.9919 0.5644 2.3983 8 14 2.5199 2.2384 3.9911 9 1 1.6753 3.4016 4.3636 10 1 2.4463 1.2106 5.0602 11 1 3.9277 2.6814 3.8264 12 6 2.0827 2.0732 -1.1547 13 8 2.5457 3.1975 -1.1648 14 7 1.6286 1.5212 -2.2973 15 6 1.2343 0.1186 -2.4539 16 6 0.7958 -0.0154 -3.9213 17 6 0.9813 1.3685 -4.5019 18 6 0.7512 1.8555 -5.7744 19 6 0.9870 3.1871 -6.0613 20 6 1.4682 4.0285 -5.0749 21 6 1.7041 3.5459 -3.8055 22 6 1.4588 2.2044 -3.5053 23 1 -0.3633 0.3419 0.9691 24 1 -0.3634 0.6684 -0.7806 25 1 -0.3633 -1.0102 -0.1885 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.6383 0.2439 3.2429 29 1 2.0812 -0.5371 -2.2513 30 1 0.4056 -0.1180 -1.7865 31 1 1.4274 -0.7347 -4.4428 32 1 -0.2507 -0.3146 -3.9795 33 1 0.3745 1.1973 -6.5433 34 1 0.8029 3.5676 -7.0552 35 1 1.6595 5.0674 -5.2997 36 1 2.0796 4.2083 -3.0395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277857434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:25 Heat of formation + Delta-G solvation = 47.772805 kcal Electronic energy + Delta-G solvation = -20032.176069 eV Core-core repulsion = 17097.197071 eV Total energy + Delta-G solvation = -2934.978998 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.28971 -39.95047 -37.57104 -37.05385 -33.83623 -33.04747 -31.89124 -30.52612 -29.55613 -26.91176 -24.59983 -24.10176 -23.45000 -22.19671 -21.05706 -19.15417 -18.15458 -17.43046 -17.14187 -16.77226 -16.47000 -15.91306 -15.58354 -15.47201 -14.84806 -14.72020 -14.41135 -13.82695 -13.61683 -13.55648 -13.33756 -13.05225 -12.79110 -12.73609 -12.64124 -12.30535 -12.08758 -11.89357 -11.80211 -11.45365 -11.00611 -10.87368 -10.66805 -9.65656 -9.61313 -8.53567 -8.21188 -5.96467 0.49433 0.54321 1.39203 1.40258 1.50738 1.84667 2.23996 2.38003 2.95080 3.10966 3.26903 3.69250 3.76195 4.08947 4.22781 4.25152 4.43958 4.47507 4.56483 4.66014 4.70277 4.80899 4.90053 4.98776 5.02637 5.09352 5.19334 5.34573 5.40978 5.49029 5.60312 5.68292 5.73178 5.97125 6.01728 6.26293 6.42362 6.69532 7.16034 7.49554 8.03666 8.71465 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.034044 B = 0.006314 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.270849 B = 4433.344059 C = 5085.096070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.099 3.901 3 N -0.468 5.468 4 C -0.329 4.329 5 H 0.065 0.935 6 C -0.002 4.002 7 N -0.884 5.884 8 Si 0.993 3.007 9 H -0.280 1.280 10 H -0.264 1.264 11 H -0.276 1.276 12 C 0.651 3.349 13 O -0.651 6.651 14 N -0.574 5.574 15 C 0.057 3.943 16 C -0.074 4.074 17 C -0.156 4.156 18 C -0.070 4.070 19 C -0.151 4.151 20 C -0.095 4.095 21 C -0.180 4.180 22 C 0.144 3.856 23 H 0.077 0.923 24 H 0.027 0.973 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.271 0.729 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.140 0.860 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 -5.640 -13.353 15.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 N -0.190 5.190 4 C -0.457 4.457 5 H 0.083 0.917 6 C -0.203 4.203 7 N -0.523 5.523 8 Si 0.817 3.183 9 H -0.206 1.206 10 H -0.189 1.189 11 H -0.202 1.202 12 C 0.356 3.644 13 O -0.536 6.536 14 N -0.299 5.299 15 C -0.063 4.063 16 C -0.111 4.111 17 C -0.160 4.160 18 C -0.089 4.089 19 C -0.171 4.171 20 C -0.114 4.114 21 C -0.202 4.202 22 C 0.047 3.953 23 H 0.096 0.904 24 H 0.045 0.955 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.158 0.842 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.737 -5.254 -12.920 14.440 hybrid contribution 0.588 0.845 1.472 1.797 sum -3.149 -4.409 -11.448 12.665 Atomic orbital electron populations 1.22405 0.95810 1.00496 1.02278 1.22319 0.95464 0.82103 1.02397 1.43062 1.59704 1.12507 1.03687 1.19470 1.25036 1.17815 0.83422 0.91705 1.25984 0.95523 0.97259 1.01518 1.70049 1.27044 1.27969 1.27255 0.84947 0.78174 0.77955 0.77238 1.20606 1.18874 1.20151 1.16178 0.83088 0.84041 0.81116 1.90652 1.55763 1.21277 1.85869 1.45003 1.65489 1.11819 1.07614 1.23596 1.02362 0.80441 0.99917 1.21235 1.04426 0.93571 0.91888 1.20402 1.05520 0.96208 0.93865 1.20764 0.97970 0.95999 0.94131 1.21339 1.02117 0.93410 1.00184 1.21111 0.98052 1.00909 0.91313 1.20947 1.06447 0.94031 0.98742 1.18708 0.97656 0.93548 0.85432 0.90411 0.95481 0.90488 0.89714 0.90171 0.91884 0.89750 0.86483 0.86967 0.87045 0.82051 0.82248 0.84221 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.16 7.95 71.98 0.57 -5.58 16 2 C 0.10 4.38 4.84 86.38 0.42 4.80 16 3 N -0.47 -25.42 2.65 -652.40 -1.73 -27.14 16 4 C -0.33 -19.34 9.30 84.02 0.78 -18.56 16 5 H 0.06 4.11 7.39 -2.91 -0.02 4.09 16 6 C 0.00 -0.11 5.22 84.90 0.44 0.33 16 7 N -0.88 -45.15 7.92 21.66 0.17 -44.98 16 8 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 C 0.65 35.83 8.06 179.06 1.44 37.28 16 13 O -0.65 -40.77 14.29 -4.01 -0.06 -40.82 16 14 N -0.57 -25.38 3.01 -646.46 -1.95 -27.33 16 15 C 0.06 1.83 4.86 86.62 0.42 2.25 16 16 C -0.07 -1.76 6.94 30.26 0.21 -1.55 16 17 C -0.16 -4.63 6.23 -19.64 -0.12 -4.76 16 18 C -0.07 -1.62 10.04 22.26 0.22 -1.40 16 19 C -0.15 -3.52 10.06 22.28 0.22 -3.29 16 20 C -0.10 -2.87 10.02 22.19 0.22 -2.65 16 21 C -0.18 -7.38 9.46 22.52 0.21 -7.16 16 22 C 0.14 5.84 6.61 38.28 0.25 6.09 16 23 H 0.08 3.68 5.66 -2.39 -0.01 3.67 16 24 H 0.03 1.11 6.30 -2.39 -0.02 1.09 16 25 H 0.08 2.44 8.10 -2.39 -0.02 2.42 16 26 H 0.09 3.19 3.74 -2.46 -0.01 3.18 16 27 H 0.08 3.87 6.21 -2.39 -0.01 3.85 16 28 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 29 H 0.08 2.56 6.33 -2.39 -0.02 2.54 16 30 H 0.12 3.75 3.08 -2.38 -0.01 3.74 16 31 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 36 H 0.09 4.64 6.34 -2.91 -0.02 4.62 16 Total: -1.00 -73.45 280.23 4.88 -68.57 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 1.11 Total: 20.59 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 5.30 Total: 5.80 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -3.50 Total: -99.45 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.06 Total: -40.82 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -73.45 4.88 -68.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277857434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.347 kcal (2) G-P(sol) polarization free energy of solvation -73.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds