Wall clock time and date at job start Mon Mar 30 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38014 * 119.88055 * 2 1 4 4 C 1.39643 * 119.99730 * 179.97438 * 3 2 1 5 5 C 1.43196 * 120.11774 * 180.02562 * 4 3 2 6 6 N 4.80246 * 134.53173 * 0.03413 * 2 1 3 7 7 C 1.39544 * 119.76606 * 0.03560 * 4 3 2 8 8 C 1.38625 * 119.77109 * 359.97438 * 7 4 3 9 9 N 1.39709 * 119.99785 * 179.97438 * 8 7 4 10 10 C 1.46490 * 120.00220 * 0.02562 * 9 8 7 11 11 C 1.52998 * 109.47380 * 179.97438 * 10 9 8 12 12 O 1.42901 * 109.47226 * 64.99797 * 11 10 9 13 13 C 1.42894 * 114.00510 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47408 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00175 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99875 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00058 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99901 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47009 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47176 * 119.99712 * 18 16 14 21 21 H 1.48492 * 109.46914 * 239.99705 * 18 16 14 22 22 C 1.38203 * 119.88684 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.46784 * 269.97539 * 1 2 3 24 24 H 1.08994 * 109.47071 * 29.98259 * 1 2 3 25 25 H 1.08996 * 109.46945 * 149.98287 * 1 2 3 26 26 H 1.08003 * 120.00457 * 359.97289 * 3 2 1 27 27 H 1.08006 * 120.11054 * 180.25299 * 7 4 3 28 28 H 0.97000 * 119.99520 * 180.02562 * 9 8 7 29 29 H 1.09009 * 109.47073 * 299.99947 * 10 9 8 30 30 H 1.09001 * 109.47428 * 59.99789 * 10 9 8 31 31 H 1.09004 * 109.47690 * 184.99861 * 11 10 9 32 32 H 1.08996 * 109.47018 * 305.00282 * 11 10 9 33 33 H 1.09004 * 109.47259 * 300.00498 * 13 12 11 34 34 H 1.09001 * 109.46912 * 60.00031 * 13 12 11 35 35 H 0.97001 * 119.99856 * 179.97438 * 17 16 14 36 36 H 1.08009 * 119.88116 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1967 0.0000 4 6 3.5910 1.1995 0.0005 5 6 4.3070 2.4396 0.0011 6 7 4.8750 3.4235 0.0020 7 6 4.2863 -0.0104 0.0003 8 6 3.5859 -1.2067 0.0001 9 7 4.2772 -2.4208 -0.0006 10 6 5.7421 -2.4296 -0.0006 11 6 6.2434 -3.8752 -0.0009 12 8 5.8615 -4.5116 -1.2220 13 6 6.2827 -5.8732 -1.3244 14 6 5.8281 -6.4419 -2.6438 15 1 5.2734 -5.8250 -3.3353 16 6 6.1203 -7.7497 -2.9682 17 7 6.7963 -8.5008 -2.1263 18 14 5.5574 -8.4545 -4.6041 19 1 4.8215 -7.4129 -5.3648 20 1 6.7401 -8.8963 -5.3860 21 1 4.6628 -9.6146 -4.3616 22 6 2.1957 -1.1982 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6527 2.1309 -0.0004 27 1 5.3663 -0.0147 0.0049 28 1 3.7871 -3.2579 -0.0012 29 1 6.1085 -1.9174 -0.8904 30 1 6.1086 -1.9185 0.8896 31 1 7.3297 -3.8831 0.0886 32 1 5.8055 -4.4117 0.8408 33 1 7.3698 -5.9230 -1.2620 34 1 5.8453 -6.4510 -0.5101 35 1 7.0015 -9.4210 -2.3544 36 1 1.6519 -2.1314 -0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308150497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:11 Heat of formation + Delta-G solvation = -4.739413 kcal Electronic energy + Delta-G solvation = -17788.447272 eV Core-core repulsion = 14851.191173 eV Total energy + Delta-G solvation = -2937.256098 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.85728 -37.40658 -36.63285 -35.46566 -32.87172 -32.60558 -30.95930 -28.06597 -27.13124 -26.69982 -24.09231 -22.61421 -22.26181 -20.71312 -18.58488 -16.66087 -16.42747 -16.12575 -15.90080 -15.79716 -14.76432 -14.58765 -14.35258 -13.96612 -13.61244 -13.55123 -13.40082 -13.24046 -13.04149 -12.93964 -12.21831 -12.00983 -11.96633 -11.70705 -11.51716 -11.23115 -10.89485 -10.88663 -10.74732 -10.12564 -10.03078 -9.19942 -8.97583 -8.87236 -8.31078 -7.45249 -6.19426 -4.21684 0.73058 1.41599 2.54214 2.90353 3.23996 3.31007 3.37012 3.42338 3.80791 3.83055 4.26197 4.65077 4.67066 4.98886 5.06435 5.11397 5.17476 5.21487 5.30587 5.40877 5.44567 5.53525 5.70457 5.78448 5.87225 5.89850 6.06431 6.11981 6.20347 6.41364 6.61506 6.95769 7.27947 7.30567 7.36172 7.70386 7.78108 8.03932 8.42299 8.91118 9.43804 10.91979 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.003441 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.756234 B = 8134.474219 C = 8688.353035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.040 4.040 3 C -0.139 4.139 4 C 0.019 3.981 5 C 0.262 3.738 6 N -0.427 5.427 7 C -0.162 4.162 8 C 0.230 3.770 9 N -0.730 5.730 10 C 0.125 3.875 11 C 0.049 3.951 12 O -0.393 6.393 13 C 0.195 3.805 14 C -0.517 4.517 15 H 0.067 0.933 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.169 4.169 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.410 0.590 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.264 0.736 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 14.381 6.946 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.041 4.041 3 C -0.162 4.162 4 C 0.015 3.985 5 C -0.053 4.053 6 N -0.103 5.103 7 C -0.188 4.188 8 C 0.124 3.876 9 N -0.358 5.358 10 C 0.001 3.999 11 C -0.029 4.029 12 O -0.313 6.313 13 C 0.121 3.879 14 C -0.555 4.555 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.193 4.193 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.143 0.857 27 H 0.147 0.853 28 H 0.246 0.754 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.074 0.926 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.657 15.797 6.815 19.259 hybrid contribution -0.266 -1.447 -0.586 1.583 sum -8.923 14.350 6.229 18.010 Atomic orbital electron populations 1.20814 0.90743 1.03089 1.02541 1.19467 0.95912 0.91894 0.96784 1.20672 0.91482 0.98129 1.05957 1.15635 0.92023 0.86133 1.04725 1.25817 0.93143 0.92911 0.93442 1.81230 1.08731 1.11255 1.09055 1.20546 0.99828 0.89642 1.08761 1.17621 0.91034 0.86286 0.92662 1.44781 1.05774 1.05170 1.80038 1.21479 0.80081 0.97094 1.01241 1.22467 0.98706 0.91903 0.89834 1.87895 1.79114 1.29165 1.35159 1.20234 0.94340 0.75870 0.97469 1.21075 1.35836 0.96507 1.02050 0.91462 1.24957 0.95088 0.96570 0.97863 1.69966 1.39490 1.08265 1.35960 0.86277 0.78467 0.78922 0.82830 1.19438 1.20788 1.20795 1.20717 0.91954 0.98493 1.08140 0.90905 0.91362 0.91157 0.85732 0.85272 0.75418 0.91339 0.91377 0.92743 0.93743 0.97609 0.97638 0.92620 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.04 -0.36 5.87 -104.72 -0.61 -0.97 16 3 C -0.14 -1.30 9.40 -39.14 -0.37 -1.67 16 4 C 0.02 0.20 5.73 -106.96 -0.61 -0.41 16 5 C 0.26 3.14 15.33 -22.47 -0.34 2.79 16 6 N -0.43 -5.95 18.54 41.84 0.78 -5.17 16 7 C -0.16 -1.81 9.02 -38.95 -0.35 -2.16 16 8 C 0.23 2.66 6.65 -83.83 -0.56 2.10 16 9 N -0.73 -9.20 5.68 -58.67 -0.33 -9.53 16 10 C 0.13 1.60 5.29 -4.05 -0.02 1.58 16 11 C 0.05 0.79 6.07 37.16 0.23 1.01 16 12 O -0.39 -8.65 10.27 -35.23 -0.36 -9.01 16 13 C 0.19 5.06 5.69 36.00 0.20 5.26 16 14 C -0.52 -14.67 9.43 -34.44 -0.32 -14.99 16 15 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 18 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.17 -1.73 9.53 -39.30 -0.37 -2.11 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 25 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 27 H 0.13 1.36 6.72 -52.48 -0.35 1.01 16 28 H 0.41 5.32 8.48 -40.82 -0.35 4.97 16 29 H 0.07 0.91 7.95 -51.92 -0.41 0.50 16 30 H 0.07 0.71 7.94 -51.93 -0.41 0.29 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 322.32 15.07 4.86 4.86 Total: -1.00 -30.89 322.32 -7.09 -37.98 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -4.87 Total: -1.52 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -2.88 Total: -8.46 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 1.18 Total: -40.11 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.36 Total: -9.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.89 -7.09 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308150497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.241 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds