Wall clock time and date at job start Mon Mar 30 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38014 * 119.88055 * 2 1 4 4 C 1.39643 * 119.99730 * 179.97438 * 3 2 1 5 5 C 1.43196 * 120.11774 * 180.02562 * 4 3 2 6 6 N 4.80246 * 134.53173 * 0.03413 * 2 1 3 7 7 C 1.39544 * 119.76606 * 0.03560 * 4 3 2 8 8 C 1.38625 * 119.77109 * 359.97438 * 7 4 3 9 9 N 1.39709 * 119.99785 * 179.97438 * 8 7 4 10 10 C 1.46490 * 120.00220 * 0.02562 * 9 8 7 11 11 C 1.52998 * 109.47380 * 179.97438 * 10 9 8 12 12 O 1.42901 * 109.47226 * 64.99797 * 11 10 9 13 13 C 1.42894 * 114.00510 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47408 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00175 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99875 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00058 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99901 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47009 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47176 * 119.99712 * 18 16 14 21 21 H 1.48492 * 109.46914 * 239.99705 * 18 16 14 22 22 C 1.38203 * 119.88684 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.46784 * 269.97539 * 1 2 3 24 24 H 1.08994 * 109.47071 * 29.98259 * 1 2 3 25 25 H 1.08996 * 109.46945 * 149.98287 * 1 2 3 26 26 H 1.08003 * 120.00457 * 359.97289 * 3 2 1 27 27 H 1.08006 * 120.11054 * 180.25299 * 7 4 3 28 28 H 0.97000 * 119.99520 * 180.02562 * 9 8 7 29 29 H 1.09009 * 109.47073 * 299.99947 * 10 9 8 30 30 H 1.09001 * 109.47428 * 59.99789 * 10 9 8 31 31 H 1.09004 * 109.47690 * 184.99861 * 11 10 9 32 32 H 1.08996 * 109.47018 * 305.00282 * 11 10 9 33 33 H 1.09004 * 109.47259 * 300.00498 * 13 12 11 34 34 H 1.09001 * 109.46912 * 60.00031 * 13 12 11 35 35 H 0.97001 * 119.99856 * 179.97438 * 17 16 14 36 36 H 1.08009 * 119.88116 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1967 0.0000 4 6 3.5910 1.1995 0.0005 5 6 4.3070 2.4396 0.0011 6 7 4.8750 3.4235 0.0020 7 6 4.2863 -0.0104 0.0003 8 6 3.5859 -1.2067 0.0001 9 7 4.2772 -2.4208 -0.0006 10 6 5.7421 -2.4296 -0.0006 11 6 6.2434 -3.8752 -0.0009 12 8 5.8615 -4.5116 -1.2220 13 6 6.2827 -5.8732 -1.3244 14 6 5.8281 -6.4419 -2.6438 15 1 5.2734 -5.8250 -3.3353 16 6 6.1203 -7.7497 -2.9682 17 7 6.7963 -8.5008 -2.1263 18 14 5.5574 -8.4545 -4.6041 19 1 4.8215 -7.4129 -5.3648 20 1 6.7401 -8.8963 -5.3860 21 1 4.6628 -9.6146 -4.3616 22 6 2.1957 -1.1982 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6527 2.1309 -0.0004 27 1 5.3663 -0.0147 0.0049 28 1 3.7871 -3.2579 -0.0012 29 1 6.1085 -1.9174 -0.8904 30 1 6.1086 -1.9185 0.8896 31 1 7.3297 -3.8831 0.0886 32 1 5.8055 -4.4117 0.8408 33 1 7.3698 -5.9230 -1.2620 34 1 5.8453 -6.4510 -0.5101 35 1 7.0015 -9.4210 -2.3544 36 1 1.6519 -2.1314 -0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308150497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:11 Heat of formation + Delta-G solvation = -23.290482 kcal Electronic energy + Delta-G solvation = -17789.251706 eV Core-core repulsion = 14851.191173 eV Total energy + Delta-G solvation = -2938.060533 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69186 -38.86342 -37.69873 -36.55979 -34.89696 -33.42145 -32.06658 -29.60490 -28.25373 -27.78123 -24.97149 -24.52554 -23.51355 -21.59924 -19.46502 -18.63219 -17.54302 -17.31155 -17.13329 -16.90403 -16.40006 -15.94979 -15.33021 -15.26538 -14.86308 -14.61433 -14.37817 -14.14266 -14.00321 -13.87680 -13.62530 -13.30226 -12.97751 -12.85890 -12.73943 -12.61241 -12.41399 -12.31518 -12.05533 -11.90126 -11.28387 -10.92734 -10.86960 -10.25781 -9.64942 -8.34594 -8.32706 -6.44820 -0.11194 0.62892 1.40999 1.41445 1.56168 1.59392 2.00235 2.34005 2.48223 2.90644 2.99656 3.01486 3.14681 3.93346 4.05149 4.23046 4.24879 4.31297 4.47278 4.52728 4.57344 4.69594 4.75105 4.82303 4.93327 4.99166 5.02318 5.17974 5.25725 5.34809 5.40850 5.54736 5.67562 5.85556 5.95461 6.36459 6.43555 6.52162 6.80191 6.82145 7.27333 8.79168 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.003441 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.756234 B = 8134.474219 C = 8688.353035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.039 4.039 3 C -0.131 4.131 4 C 0.010 3.990 5 C 0.282 3.718 6 N -0.465 5.465 7 C -0.168 4.168 8 C 0.215 3.785 9 N -0.739 5.739 10 C 0.136 3.864 11 C 0.041 3.959 12 O -0.406 6.406 13 C 0.209 3.791 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.007 3.993 17 N -0.930 5.930 18 Si 0.980 3.020 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.271 1.271 22 C -0.171 4.171 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.145 0.855 27 H 0.131 0.869 28 H 0.406 0.594 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.052 0.948 33 H -0.014 1.014 34 H -0.010 1.010 35 H 0.270 0.730 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.297 14.834 6.562 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.040 4.040 3 C -0.153 4.153 4 C 0.006 3.994 5 C -0.032 4.032 6 N -0.141 5.141 7 C -0.194 4.194 8 C 0.110 3.890 9 N -0.368 5.368 10 C 0.011 3.989 11 C -0.036 4.036 12 O -0.326 6.326 13 C 0.134 3.866 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.804 3.196 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.197 1.197 22 C -0.195 4.195 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.163 0.837 27 H 0.149 0.851 28 H 0.241 0.759 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.004 0.996 34 H 0.008 0.992 35 H 0.079 0.921 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.202 16.286 6.448 20.270 hybrid contribution 0.165 -1.530 -0.388 1.587 sum -10.037 14.755 6.061 18.847 Atomic orbital electron populations 1.20881 0.88660 1.03966 1.03599 1.19769 0.97370 0.91190 0.95627 1.20962 0.90933 0.99232 1.04207 1.15677 0.92600 0.85321 1.05822 1.25948 0.92310 0.92657 0.92278 1.81249 1.09831 1.12440 1.10607 1.20593 1.00087 0.89740 1.08980 1.17737 0.91620 0.85868 0.93776 1.44744 1.05516 1.05453 1.81081 1.21396 0.80548 0.94568 1.02345 1.22783 0.99532 0.93482 0.87764 1.87844 1.79259 1.27180 1.38285 1.19820 0.92785 0.77793 0.96154 1.21414 1.36596 0.97339 1.03100 0.92089 1.25920 0.94739 0.96706 1.01776 1.70064 1.40093 1.08810 1.37940 0.85172 0.78314 0.78239 0.77921 1.18876 1.19891 1.19652 1.20955 0.91592 0.99515 1.07420 0.89651 0.90067 0.90773 0.83699 0.85107 0.75892 0.92002 0.88421 0.91992 0.92957 0.99578 0.99239 0.92064 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 71.24 0.71 -0.44 16 2 C -0.04 -0.61 5.87 -19.92 -0.12 -0.72 16 3 C -0.13 -2.13 9.40 22.56 0.21 -1.92 16 4 C 0.01 0.20 5.73 -21.38 -0.12 0.07 16 5 C 0.28 6.50 15.33 88.33 1.35 7.85 16 6 N -0.47 -12.72 18.54 19.00 0.35 -12.37 16 7 C -0.17 -3.57 9.02 22.68 0.20 -3.37 16 8 C 0.21 4.73 6.65 38.17 0.25 4.99 16 9 N -0.74 -18.16 5.68 -339.54 -1.93 -20.09 16 10 C 0.14 3.36 5.29 86.38 0.46 3.82 16 11 C 0.04 1.33 6.07 71.98 0.44 1.77 16 12 O -0.41 -18.13 10.27 -148.98 -1.53 -19.66 16 13 C 0.21 11.17 5.69 71.23 0.41 11.57 16 14 C -0.55 -31.51 9.43 25.60 0.24 -31.27 16 15 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 16 C 0.01 0.41 5.46 84.66 0.46 0.87 16 17 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 18 Si 0.98 43.32 29.54 68.60 2.03 45.35 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 C -0.17 -3.23 9.53 22.45 0.21 -3.01 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 25 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 26 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.13 2.64 6.72 -2.91 -0.02 2.62 16 28 H 0.41 10.45 8.48 -92.71 -0.79 9.66 16 29 H 0.06 1.62 7.95 -2.38 -0.02 1.60 16 30 H 0.10 1.86 7.94 -2.39 -0.02 1.84 16 31 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 34 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -66.18 322.32 4.22 -61.96 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.30 Total: 8.80 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 4.71 Total: -9.79 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.29 Total: -86.66 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -1.53 Total: -19.66 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -66.18 4.22 -61.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308150497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.666 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds