Wall clock time and date at job start Mon Mar 30 2020 06:42:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53002 * 109.47025 * 2 1
4 4 N 1.46899 * 109.46867 * 119.99783 * 2 1 3
5 5 C 1.46896 * 110.99865 * 176.69487 * 4 2 1
6 6 C 1.50701 * 109.47316 * 293.95472 * 5 4 2
7 7 H 1.08007 * 119.99827 * 359.97438 * 6 5 4
8 8 C 1.37873 * 120.00504 * 180.02562 * 6 5 4
9 9 N 1.31523 * 119.99716 * 0.02562 * 8 6 5
10 10 Si 1.86794 * 120.00441 * 179.97438 * 8 6 5
11 11 H 1.48504 * 109.46828 * 0.02562 * 10 8 6
12 12 H 1.48502 * 109.47303 * 119.99932 * 10 8 6
13 13 H 1.48497 * 109.47606 * 240.00043 * 10 8 6
14 14 C 1.38765 * 111.00041 * 300.64497 * 4 2 1
15 15 N 1.30421 * 126.38851 * 355.16311 * 14 4 2
16 16 O 1.41334 * 109.63247 * 179.97438 * 15 14 4
17 17 C 1.34877 * 109.48425 * 0.02562 * 16 15 14
18 18 C 1.38986 * 133.32375 * 180.02562 * 17 16 15
19 19 C 1.37822 * 119.79483 * 179.97438 * 18 17 16
20 20 C 1.38738 * 120.57452 * 0.02562 * 19 18 17
21 21 C 1.36689 * 120.47662 * 359.74749 * 20 19 18
22 22 C 1.39502 * 119.81028 * 0.49353 * 21 20 19
23 23 H 1.09009 * 109.47436 * 300.00122 * 1 2 3
24 24 H 1.09001 * 109.47547 * 60.00076 * 1 2 3
25 25 H 1.09003 * 109.47237 * 180.02562 * 1 2 3
26 26 H 1.08999 * 109.46892 * 239.99791 * 2 1 3
27 27 H 1.09003 * 109.46808 * 184.93528 * 3 2 1
28 28 H 1.08998 * 109.46712 * 304.92890 * 3 2 1
29 29 H 1.09000 * 109.47327 * 64.92881 * 3 2 1
30 30 H 1.09001 * 109.47652 * 53.95384 * 5 4 2
31 31 H 1.09001 * 109.47776 * 173.95369 * 5 4 2
32 32 H 0.97001 * 119.99788 * 180.02562 * 9 8 6
33 33 H 1.08002 * 120.10156 * 0.02562 * 18 17 16
34 34 H 1.08006 * 119.71151 * 179.97438 * 19 18 17
35 35 H 1.07999 * 119.76147 * 179.97438 * 20 19 18
36 36 H 1.08004 * 120.08798 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0196 -0.6925 1.1995
5 6 3.4859 -0.7809 1.1946
6 6 3.9319 -1.6683 0.0611
7 1 3.1992 -2.1217 -0.5902
8 6 5.2750 -1.9024 -0.1438
9 7 6.1672 -1.3516 0.6503
10 14 5.8278 -3.0030 -1.5483
11 1 4.6384 -3.4959 -2.2884
12 1 6.6982 -2.2297 -2.4700
13 1 6.5860 -4.1577 -1.0035
14 6 1.5628 -0.0716 2.3534
15 7 0.8742 1.0342 2.4163
16 8 0.5965 1.3445 3.7669
17 6 1.1323 0.3985 4.5652
18 6 1.1579 0.2158 5.9427
19 6 1.8024 -0.8793 6.4765
20 6 2.4273 -1.8023 5.6504
21 6 2.4088 -1.6421 4.2930
22 6 1.7661 -0.5374 3.7338
23 1 -0.3634 0.5139 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3634 -1.0277 0.0005
26 1 1.8933 -0.5139 -0.8900
27 1 3.1264 1.4438 -0.0884
28 1 1.6063 1.9811 -0.8425
29 1 1.7505 1.9303 0.9308
30 1 3.9096 0.2149 1.0646
31 1 3.8279 -1.2005 2.1407
32 1 7.1122 -1.5160 0.5058
33 1 0.6736 0.9294 6.5929
34 1 1.8218 -1.0197 7.5472
35 1 2.9288 -2.6555 6.0827
36 1 2.8969 -2.3647 3.6558
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000310209575.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:42:20
Heat of formation + Delta-G solvation = 78.055821 kcal
Electronic energy + Delta-G solvation = -19726.281357 eV
Core-core repulsion = 16792.615530 eV
Total energy + Delta-G solvation = -2933.665828 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.37699 -38.29126 -37.26583 -33.10461 -32.60824 -30.84590 -30.14315 -29.56804
-27.04555 -26.38871 -23.00177 -22.75163 -22.08119 -21.71893 -18.98212 -17.34094
-16.55106 -16.42520 -15.53872 -15.24981 -15.00378 -14.71635 -14.25527 -13.73002
-13.49715 -13.30116 -13.10075 -12.43552 -12.21722 -11.94035 -11.83723 -11.79700
-11.40011 -11.29143 -10.95059 -10.90582 -10.77837 -10.54986 -10.37601 -10.17035
-9.81385 -9.40329 -8.75832 -8.56811 -8.41854 -7.70018 -6.22380 -4.26271
0.98397 1.55490 2.51985 3.05512 3.21180 3.29502 3.33683 3.86093
4.03170 4.31988 4.72808 4.89848 5.08825 5.11970 5.16329 5.39591
5.54348 5.62947 5.67671 5.75192 6.00103 6.11408 6.13320 6.21766
6.33756 6.41005 6.47927 6.48885 6.59203 6.65730 6.76775 6.89948
7.05767 7.10610 7.40875 7.56586 7.83994 7.96193 8.17395 8.79039
9.38776 10.88152
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.019879 B = 0.007221 C = 0.005726
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1408.158169 B = 3876.836494 C = 4888.912582
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.082 3.918
3 C -0.191 4.191
4 N -0.440 5.440
5 C 0.195 3.805
6 C -0.518 4.518
7 H 0.069 0.931
8 C 0.061 3.939
9 N -0.892 5.892
10 Si 0.902 3.098
11 H -0.270 1.270
12 H -0.283 1.283
13 H -0.282 1.282
14 C 0.326 3.674
15 N -0.343 5.343
16 O -0.116 6.116
17 C 0.090 3.910
18 C -0.142 4.142
19 C -0.065 4.065
20 C -0.163 4.163
21 C -0.021 4.021
22 C -0.183 4.183
23 H 0.071 0.929
24 H 0.057 0.943
25 H 0.054 0.946
26 H 0.105 0.895
27 H 0.064 0.936
28 H 0.056 0.944
29 H 0.077 0.923
30 H 0.017 0.983
31 H 0.043 0.957
32 H 0.264 0.736
33 H 0.132 0.868
34 H 0.133 0.867
35 H 0.130 0.870
36 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.558 0.778 7.275 10.520
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.025 4.025
3 C -0.250 4.250
4 N -0.163 5.163
5 C 0.073 3.927
6 C -0.557 4.557
7 H 0.087 0.913
8 C -0.141 4.141
9 N -0.530 5.530
10 Si 0.729 3.271
11 H -0.195 1.195
12 H -0.209 1.209
13 H -0.208 1.208
14 C 0.057 3.943
15 N -0.105 5.105
16 O -0.118 6.118
17 C 0.036 3.964
18 C -0.161 4.161
19 C -0.084 4.084
20 C -0.181 4.181
21 C -0.041 4.041
22 C -0.188 4.188
23 H 0.090 0.910
24 H 0.076 0.924
25 H 0.073 0.927
26 H 0.123 0.877
27 H 0.083 0.917
28 H 0.075 0.925
29 H 0.095 0.905
30 H 0.034 0.966
31 H 0.061 0.939
32 H 0.074 0.926
33 H 0.150 0.850
34 H 0.151 0.849
35 H 0.148 0.852
36 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -8.130 1.335 6.720 10.631
hybrid contribution 1.087 -0.541 -0.427 1.287
sum -7.042 0.793 6.293 9.477
Atomic orbital electron populations
1.22092 0.95111 1.01833 1.02611 1.21746 0.94601 0.93261 0.92880
1.22601 1.02209 0.97182 1.02986 1.59437 1.16004 1.43404 0.97479
1.20092 0.75181 0.97828 0.99644 1.21058 0.91943 1.29377 1.13297
0.91309 1.24956 0.96398 0.96066 0.96717 1.69964 1.01571 1.43658
1.37796 0.86368 0.78776 0.80176 0.81731 1.19492 1.20906 1.20811
1.23136 0.91550 0.87758 0.91897 1.80327 1.27463 1.13868 0.88863
1.89075 1.67321 1.41601 1.13826 1.20220 0.93650 0.89306 0.93235
1.19938 1.05715 1.00807 0.89676 1.21042 0.94732 0.92693 0.99931
1.20757 1.03252 1.01071 0.93050 1.20677 0.93424 0.94794 0.95174
1.20446 1.07701 1.00221 0.90390 0.90984 0.92424 0.92662 0.87746
0.91690 0.92518 0.90489 0.96561 0.93875 0.92583 0.84998 0.84907
0.85182 0.84240
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.72 9.01 37.16 0.33 -2.39 16
2 C 0.08 1.61 2.78 -67.71 -0.19 1.42 16
3 C -0.19 -3.66 8.50 37.16 0.32 -3.34 16
4 N -0.44 -9.52 4.60 -164.84 -0.76 -10.28 16
5 C 0.19 4.79 4.46 -4.98 -0.02 4.77 16
6 C -0.52 -13.52 8.47 -34.44 -0.29 -13.81 16
7 H 0.07 1.77 7.12 -52.48 -0.37 1.40 16
8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
9 N -0.89 -24.90 13.29 55.43 0.74 -24.17 16
10 Si 0.90 20.46 29.54 -169.99 -5.02 15.43 16
11 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16
12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
14 C 0.33 6.77 5.71 -153.65 -0.88 5.90 16
15 N -0.34 -6.99 7.34 32.51 0.24 -6.75 16
16 O -0.12 -2.27 12.06 7.53 0.09 -2.18 16
17 C 0.09 1.60 7.47 -38.52 -0.29 1.32 16
18 C -0.14 -1.96 10.07 -39.46 -0.40 -2.35 16
19 C -0.06 -0.78 10.02 -39.55 -0.40 -1.18 16
20 C -0.16 -2.20 9.98 -39.96 -0.40 -2.60 16
21 C -0.02 -0.35 9.32 -39.67 -0.37 -0.72 16
22 C -0.18 -3.50 6.02 -105.05 -0.63 -4.14 16
23 H 0.07 1.31 5.56 -51.92 -0.29 1.02 16
24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
26 H 0.10 2.12 6.77 -51.93 -0.35 1.77 16
27 H 0.06 1.36 6.60 -51.93 -0.34 1.01 16
28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16
29 H 0.08 1.54 5.22 -51.93 -0.27 1.27 16
30 H 0.02 0.44 6.21 -51.93 -0.32 0.12 16
31 H 0.04 1.11 6.25 -51.93 -0.32 0.78 16
32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16
33 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16
34 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16
35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16
36 H 0.14 2.44 7.35 -52.48 -0.39 2.06 16
LS Contribution 293.40 15.07 4.42 4.42
Total: -1.00 -28.55 293.40 -7.93 -36.48
By element:
Atomic # 1 Polarization: 6.96 SS G_CDS: -4.33 Total: 2.63 kcal
Atomic # 6 Polarization: -12.28 SS G_CDS: -3.31 Total: -15.59 kcal
Atomic # 7 Polarization: -41.41 SS G_CDS: 0.22 Total: -41.19 kcal
Atomic # 8 Polarization: -2.27 SS G_CDS: 0.09 Total: -2.18 kcal
Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal
Total LS contribution 4.42 Total: 4.42 kcal
Total: -28.55 -7.93 -36.48 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000310209575.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.538 kcal
(2) G-P(sol) polarization free energy of solvation -28.548 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.990 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.056 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds