Wall clock time and date at job start Mon Mar 30 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38000 * 119.77829 * 2 1 4 4 C 1.43209 * 120.25593 * 0.02562 * 3 2 1 5 5 N 3.47429 * 80.09992 * 0.02562 * 2 1 3 6 6 C 1.41584 * 119.48541 * 180.27564 * 3 2 1 7 7 C 1.36003 * 119.01798 * 359.46856 * 6 3 2 8 8 C 1.40720 * 119.51770 * 0.27537 * 7 6 3 9 9 O 1.21987 * 119.74661 * 179.97438 * 8 7 6 10 10 N 1.34543 * 120.50223 * 359.97438 * 8 7 6 11 11 C 1.46510 * 119.48181 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47292 * 87.89311 * 11 10 8 13 13 C 1.53005 * 109.46945 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46872 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47095 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99738 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00293 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99522 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47157 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47392 * 119.99819 * 19 17 15 22 22 H 1.48499 * 109.47268 * 240.00028 * 19 17 15 23 23 H 1.09000 * 109.47201 * 235.14942 * 1 2 3 24 24 H 1.08999 * 109.47684 * 355.15456 * 1 2 3 25 25 H 1.08998 * 109.46914 * 115.15582 * 1 2 3 26 26 H 1.08001 * 120.48770 * 179.74019 * 6 3 2 27 27 H 1.08002 * 120.23767 * 180.29837 * 7 6 3 28 28 H 1.08996 * 109.46575 * 207.89645 * 11 10 8 29 29 H 1.09003 * 109.46773 * 327.89077 * 11 10 8 30 30 H 1.09008 * 109.47245 * 299.99893 * 12 11 10 31 31 H 1.08994 * 109.47554 * 59.99886 * 12 11 10 32 32 H 1.09000 * 109.46514 * 299.99326 * 13 12 11 33 33 H 1.08999 * 109.47333 * 60.00212 * 13 12 11 34 34 H 1.09000 * 109.47436 * 299.99880 * 14 13 12 35 35 H 1.09003 * 109.47436 * 59.99893 * 14 13 12 36 36 H 0.97004 * 119.99621 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1923 1.1978 0.0000 4 6 1.4770 2.4384 0.0006 5 7 0.9096 3.4226 0.0015 6 6 3.6081 1.1906 -0.0059 7 6 4.2618 -0.0021 -0.0005 8 6 3.5212 -1.1986 0.0050 9 8 4.1032 -2.2707 0.0094 10 7 2.1761 -1.1692 0.0054 11 6 1.4273 -2.4285 0.0117 12 6 1.2128 -2.8870 1.4555 13 6 0.4314 -4.2025 1.4619 14 6 0.2175 -4.6614 2.9057 15 6 -0.5527 -5.9567 2.9122 16 1 -0.8586 -6.4077 1.9798 17 6 -0.8669 -6.5661 4.1085 18 7 -0.4939 -6.0171 5.2439 19 14 -1.8209 -8.1720 4.1164 20 1 -2.1188 -8.5777 2.7193 21 1 -1.0098 -9.2264 4.7763 22 1 -3.0932 -7.9883 4.8599 23 1 -0.3633 -0.5872 0.8433 24 1 -0.3634 1.0239 0.0868 25 1 -0.3633 -0.4368 -0.9302 26 1 4.1608 2.1184 -0.0102 27 1 5.3414 -0.0306 0.0000 28 1 0.4608 -2.2788 -0.4694 29 1 1.9897 -3.1882 -0.5311 30 1 2.1795 -3.0367 1.9366 31 1 0.6506 -2.1273 1.9983 32 1 -0.5352 -4.0532 0.9808 33 1 0.9941 -4.9621 0.9193 34 1 1.1842 -4.8107 3.3866 35 1 -0.3450 -3.9020 3.4489 36 1 -0.7153 -6.4456 6.0855 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385239533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:57 Heat of formation + Delta-G solvation = 4.324606 kcal Electronic energy + Delta-G solvation = -18427.029546 eV Core-core repulsion = 15490.166493 eV Total energy + Delta-G solvation = -2936.863053 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.90141 -37.92281 -36.78814 -35.71276 -34.12307 -32.39085 -31.98345 -29.05821 -28.21940 -25.64859 -23.81019 -23.11554 -21.75630 -20.28985 -19.46066 -17.93268 -16.71438 -16.45445 -16.03079 -15.63088 -14.89680 -14.48495 -14.29363 -14.13312 -13.92832 -13.80138 -13.56304 -13.06182 -12.97008 -12.63397 -12.38881 -12.18908 -12.06740 -11.82016 -11.41220 -11.09659 -10.74489 -10.71312 -10.64566 -10.34346 -10.13169 -9.79015 -9.38994 -9.09654 -8.38684 -8.18368 -6.03299 -4.06057 0.42941 1.06119 2.16822 2.53708 2.87164 3.28890 3.36662 3.40186 3.50359 3.66423 3.90111 4.32127 4.43055 4.50330 4.74439 4.94478 5.00982 5.04286 5.11254 5.32789 5.36896 5.39643 5.55451 5.64908 5.76948 5.84957 5.94758 6.15831 6.24323 6.56791 6.73514 6.77321 7.02834 7.29731 7.62791 7.75821 7.76531 7.96094 8.37807 9.01293 9.58480 11.08029 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.029487 B = 0.003767 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.330704 B = 7431.919913 C = 7937.614015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.247 3.753 3 C -0.163 4.163 4 C 0.277 3.723 5 N -0.430 5.430 6 C 0.014 3.986 7 C -0.243 4.243 8 C 0.516 3.484 9 O -0.526 6.526 10 N -0.479 5.479 11 C 0.079 3.921 12 C -0.132 4.132 13 C -0.106 4.106 14 C 0.021 3.979 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.105 0.895 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.142 0.858 27 H 0.157 0.843 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 14.230 -12.363 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.128 3.872 3 C -0.173 4.173 4 C -0.038 4.038 5 N -0.107 5.107 6 C -0.008 4.008 7 C -0.265 4.265 8 C 0.317 3.683 9 O -0.406 6.406 10 N -0.186 5.186 11 C -0.041 4.041 12 C -0.170 4.170 13 C -0.144 4.144 14 C -0.016 4.016 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.123 0.877 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.160 0.840 27 H 0.174 0.826 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.457 14.923 -12.180 19.772 hybrid contribution -0.220 -1.175 0.214 1.215 sum 4.237 13.748 -11.966 18.712 Atomic orbital electron populations 1.21390 0.87351 1.05789 1.05569 1.20799 0.95174 0.84812 0.86403 1.15094 0.92285 0.85707 1.24210 1.24955 0.93328 0.92444 0.93073 1.81304 1.07871 1.10546 1.10952 1.21223 0.91290 0.99197 0.89122 1.21970 1.01664 0.90577 1.12257 1.17299 0.80370 0.91683 0.78901 1.91001 1.67511 1.31623 1.50440 1.45588 1.08841 1.07408 1.56759 1.22501 0.96706 0.83473 1.01443 1.22036 1.02300 0.99868 0.92794 1.21578 0.97775 0.93247 1.01835 1.19091 0.97025 0.96016 0.89468 1.21279 1.35172 1.07164 0.92366 0.92598 1.25033 0.96088 0.97669 0.95706 1.69975 1.46662 1.39438 0.97339 0.86542 0.79710 0.83713 0.78078 1.19724 1.20988 1.21027 0.87694 0.89159 0.88158 0.84025 0.82580 0.88532 0.87604 0.91126 0.91870 0.93054 0.92812 0.96514 0.96641 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.45 36.00 0.30 -0.68 16 2 C 0.25 2.19 6.70 -81.42 -0.55 1.65 16 3 C -0.16 -1.41 5.74 -106.78 -0.61 -2.02 16 4 C 0.28 2.68 13.49 -22.47 -0.30 2.38 16 5 N -0.43 -5.09 18.54 41.84 0.78 -4.31 16 6 C 0.01 0.11 9.83 -39.11 -0.38 -0.28 16 7 C -0.24 -2.35 9.96 -39.45 -0.39 -2.75 16 8 C 0.52 6.69 7.39 -15.43 -0.11 6.58 16 9 O -0.53 -8.93 16.62 4.93 0.08 -8.85 16 10 N -0.48 -5.30 2.56 -114.68 -0.29 -5.59 16 11 C 0.08 0.91 4.77 -4.04 -0.02 0.89 16 12 C -0.13 -1.98 5.48 -26.73 -0.15 -2.13 16 13 C -0.11 -1.97 5.15 -26.73 -0.14 -2.11 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H 0.10 0.74 7.06 -51.93 -0.37 0.38 16 24 H 0.09 0.61 6.42 -51.93 -0.33 0.28 16 25 H 0.10 0.50 7.62 -51.93 -0.40 0.11 16 26 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 27 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 28 H 0.10 0.83 6.41 -51.93 -0.33 0.49 16 29 H 0.11 1.34 7.43 -51.93 -0.39 0.95 16 30 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16 31 H 0.06 0.89 7.32 -51.93 -0.38 0.51 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -33.23 313.51 -6.59 -39.82 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -4.70 Total: -4.88 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.90 Total: -11.33 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 1.22 Total: -35.82 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.23 -6.59 -39.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385239533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.149 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds